HEADER HYDROLASE 22-DEC-11 2LNC TITLE SOLUTION NMR STRUCTURE OF NORWALK VIRUS PROTEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3CLPRO; COMPND 5 EC: 3.4.22.66; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS; SOURCE 3 ORGANISM_TAXID: 524364; SOURCE 4 STRAIN: GI/HUMAN/UNITED STATES/NORWALK/1968; SOURCE 5 GENE: ORF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS VIRAL PROTEASE, CHYMOTRYPSIN-LIKE PROTEASE, HYDROLASE, CALICIVIRUS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.TAKAHASHI,Y.HIROMASA,Y.KIM,A.ANBANANDAM,K.CHANG,O.PRAKASH REVDAT 4 01-MAY-24 2LNC 1 REMARK SEQADV REVDAT 3 27-MAR-13 2LNC 1 JRNL REVDAT 2 06-FEB-13 2LNC 1 JRNL REVDAT 1 26-DEC-12 2LNC 0 JRNL AUTH D.TAKAHASHI,Y.HIROMASA,Y.KIM,A.ANBANANDAM,X.YAO,K.O.CHANG, JRNL AUTH 2 O.PRAKASH JRNL TITL STRUCTURAL AND DYNAMICS CHARACTERIZATION OF NOROVIRUS JRNL TITL 2 PROTEASE. JRNL REF PROTEIN SCI. V. 22 347 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 23319456 JRNL DOI 10.1002/PRO.2215 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1000102594. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 NOROVIRUS PROTEASE, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 3 MM SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-99% 15N] REMARK 210 NOROVIRUS PROTEASE, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 3 MM SODIUM AZIDE, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 80.22 60.45 REMARK 500 1 HIS A 3 -46.73 -132.78 REMARK 500 1 HIS A 5 112.37 61.12 REMARK 500 1 PHE A 47 35.08 39.48 REMARK 500 1 ALA A 59 77.30 -175.34 REMARK 500 1 ASP A 74 35.17 -171.89 REMARK 500 1 THR A 76 -44.68 -161.93 REMARK 500 1 GLU A 82 75.11 -67.60 REMARK 500 1 PRO A 85 -168.09 -71.23 REMARK 500 1 SER A 125 -175.81 -61.30 REMARK 500 1 LEU A 129 47.76 -141.77 REMARK 500 1 THR A 130 -68.03 -133.60 REMARK 500 1 ALA A 132 36.88 -175.45 REMARK 500 1 ASP A 138 165.85 173.52 REMARK 500 1 ILE A 142 -55.11 -143.09 REMARK 500 1 CYS A 161 -82.26 -87.08 REMARK 500 1 ASN A 172 50.49 -90.71 REMARK 500 1 THR A 173 116.39 -160.22 REMARK 500 2 HIS A 7 -68.06 -105.28 REMARK 500 2 SER A 21 30.97 -98.16 REMARK 500 2 THR A 41 29.60 -157.68 REMARK 500 2 GLU A 45 150.27 178.72 REMARK 500 2 PHE A 47 35.54 39.25 REMARK 500 2 ALA A 59 48.52 -175.03 REMARK 500 2 ARG A 72 76.33 -107.45 REMARK 500 2 ASP A 74 41.02 -94.98 REMARK 500 2 LEU A 139 34.22 -98.89 REMARK 500 2 CYS A 161 -77.90 -68.75 REMARK 500 2 ALA A 165 -65.37 -108.46 REMARK 500 2 VAL A 178 -41.69 -172.54 REMARK 500 2 GLN A 179 91.42 -60.05 REMARK 500 2 ALA A 180 116.57 -175.58 REMARK 500 2 ALA A 186 77.85 59.95 REMARK 500 2 LEU A 187 79.97 60.30 REMARK 500 3 HIS A 2 -47.20 -134.16 REMARK 500 3 HIS A 3 -176.84 60.43 REMARK 500 3 HIS A 4 129.86 -170.44 REMARK 500 3 THR A 41 30.09 -157.57 REMARK 500 3 GLU A 45 150.21 178.16 REMARK 500 3 PHE A 47 35.58 39.03 REMARK 500 3 ALA A 59 76.47 -175.19 REMARK 500 3 ASP A 74 36.71 -175.26 REMARK 500 3 LEU A 139 32.64 -98.98 REMARK 500 3 ALA A 148 165.69 -44.37 REMARK 500 3 CYS A 161 -71.69 -87.81 REMARK 500 4 HIS A 2 91.03 -67.61 REMARK 500 4 HIS A 6 118.97 -176.70 REMARK 500 4 HIS A 7 -68.87 68.39 REMARK 500 4 VAL A 38 36.27 -93.24 REMARK 500 4 THR A 41 29.47 -148.37 REMARK 500 REMARK 500 THIS ENTRY HAS 342 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17523 RELATED DB: BMRB DBREF 2LNC A 8 188 UNP Q83883 POLG_NVN68 1101 1281 SEQADV 2LNC MET A 1 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 2 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 3 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 4 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 5 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 6 UNP Q83883 EXPRESSION TAG SEQADV 2LNC HIS A 7 UNP Q83883 EXPRESSION TAG SEQRES 1 A 188 MET HIS HIS HIS HIS HIS HIS ALA PRO PRO THR LEU TRP SEQRES 2 A 188 SER ARG VAL THR LYS PHE GLY SER GLY TRP GLY PHE TRP SEQRES 3 A 188 VAL SER PRO THR VAL PHE ILE THR THR THR HIS VAL VAL SEQRES 4 A 188 PRO THR GLY VAL LYS GLU PHE PHE GLY GLU PRO LEU SER SEQRES 5 A 188 SER ILE ALA ILE HIS GLN ALA GLY GLU PHE THR GLN PHE SEQRES 6 A 188 ARG PHE SER LYS LYS MET ARG PRO ASP LEU THR GLY MET SEQRES 7 A 188 VAL LEU GLU GLU GLY CYS PRO GLU GLY THR VAL CYS SER SEQRES 8 A 188 VAL LEU ILE LYS ARG ASP SER GLY GLU LEU LEU PRO LEU SEQRES 9 A 188 ALA VAL ARG MET GLY ALA ILE ALA SER MET ARG ILE GLN SEQRES 10 A 188 GLY ARG LEU VAL HIS GLY GLN SER GLY MET LEU LEU THR SEQRES 11 A 188 GLY ALA ASN ALA LYS GLY MET ASP LEU GLY THR ILE PRO SEQRES 12 A 188 GLY ASP CYS GLY ALA PRO TYR VAL HIS LYS ARG GLY ASN SEQRES 13 A 188 ASP TRP VAL VAL CYS GLY VAL HIS ALA ALA ALA THR LYS SEQRES 14 A 188 SER GLY ASN THR VAL VAL CYS ALA VAL GLN ALA GLY GLU SEQRES 15 A 188 GLY GLU THR ALA LEU GLU HELIX 1 1 PRO A 9 VAL A 16 1 8 SHEET 1 A 5 THR A 17 PHE A 19 0 SHEET 2 A 5 GLY A 22 SER A 28 -1 O GLY A 24 N THR A 17 SHEET 3 A 5 VAL A 31 THR A 34 -1 O VAL A 31 N SER A 28 SHEET 4 A 5 THR A 63 PHE A 67 -1 O PHE A 65 N PHE A 32 SHEET 5 A 5 ILE A 54 ALA A 55 -1 N ALA A 55 O ARG A 66 SHEET 1 B 2 GLU A 45 PHE A 46 0 SHEET 2 B 2 GLU A 49 PRO A 50 -1 O GLU A 49 N PHE A 46 SHEET 1 C 6 TRP A 158 VAL A 163 0 SHEET 2 C 6 PRO A 149 LYS A 153 -1 N HIS A 152 O VAL A 159 SHEET 3 C 6 VAL A 89 ILE A 94 -1 N SER A 91 O VAL A 151 SHEET 4 C 6 LEU A 102 ARG A 115 -1 O LEU A 102 N ILE A 94 SHEET 5 C 6 LEU A 120 LEU A 128 -1 O MET A 127 N ARG A 107 SHEET 6 C 6 THR A 173 ALA A 177 -1 O VAL A 174 N GLY A 126 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1