HEADER SIGNALING PROTEIN/PROTEIN BINDING 28-DEC-11 2LNH TITLE ENTEROHAEMORRHAGIC E. COLI (EHEC) EXPLOITS A TRYPTOPHAN SWITCH TO TITLE 2 HIJACK HOST F-ACTIN ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL WISKOTT-ALDRICH SYNDROME PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 207-270; COMPND 5 SYNONYM: N-WASP; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN COMPND 9 2-LIKE PROTEIN 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SH3 DOMAIN RESIDUES 339-402; COMPND 12 SYNONYM: BAI1-ASSOCIATED PROTEIN 2-LIKE PROTEIN 1, INSULIN RECEPTOR COMPND 13 TYROSINE KINASE SUBSTRATE; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: SECRETED EFFECTOR PROTEIN ESPF(U); COMPND 17 CHAIN: C; COMPND 18 FRAGMENT: UNP RESIDUES 221-267; COMPND 19 SYNONYM: ESPF-LIKE PROTEIN ENCODED ON PROPHAGE U, TIR-CYTOSKELETON COMPND 20 COUPLING PROTEIN TCCP; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WASL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: BAIAP2L1, IRTKS; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 21 ORGANISM_TAXID: 83334; SOURCE 22 STRAIN: O157:H7; SOURCE 23 GENE: ESPF(U), TCCP; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS PROTEIN COMPLEX, SIGNALING PROTEIN-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR O.AITIO,M.HELLMAN,B.SKEHAN,T.KESTI,J.M.LEONG,K.SAKSELA,P.PERMI REVDAT 3 31-OCT-12 2LNH 1 JRNL REVDAT 2 12-SEP-12 2LNH 1 JRNL REVDAT 1 29-AUG-12 2LNH 0 JRNL AUTH O.AITIO,M.HELLMAN,B.SKEHAN,T.KESTI,J.M.LEONG,K.SAKSELA, JRNL AUTH 2 P.PERMI JRNL TITL ENTEROHAEMORRHAGIC ESCHERICHIA COLI EXPLOITS A TRYPTOPHAN JRNL TITL 2 SWITCH TO HIJACK HOST F-ACTIN ASSEMBLY. JRNL REF STRUCTURE V. 20 1692 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22921828 JRNL DOI 10.1016/J.STR.2012.07.015 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0, CYANA 2.1 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM (AMBER), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JAN-12. REMARK 100 THE RCSB ID CODE IS RCSB102599. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN_1, 0.3 MM PROTEIN_2, 0.3 REMARK 210 MM PROTEIN_3, 93% H2O/7% D2O; 0.5 REMARK 210 MM PROTEIN_1, 0.5 MM [U-98% 13C; REMARK 210 U-98% 15N] PROTEIN_2, 0.5 MM REMARK 210 PROTEIN_3, 93% H2O/7% D2O; 0.5 MM REMARK 210 PROTEIN_1, 0.5 MM PROTEIN_2, 0.5 REMARK 210 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN_3, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 3D HCCH-COSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY C 132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR B 126 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 3 ARG B 119 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 57 -23.42 -147.35 REMARK 500 1 LYS B 86 9.74 58.55 REMARK 500 1 PRO C 161 -77.14 -67.55 REMARK 500 1 ALA C 162 163.02 151.92 REMARK 500 1 PRO C 171 75.21 -68.76 REMARK 500 2 ASN A 22 23.02 -140.31 REMARK 500 2 THR A 57 -25.33 -148.13 REMARK 500 2 LYS B 70 14.84 59.11 REMARK 500 2 SER B 84 35.07 -145.16 REMARK 500 2 PRO C 161 -85.72 -68.23 REMARK 500 2 ALA C 162 162.86 161.12 REMARK 500 3 HIS A 9 -54.28 -136.52 REMARK 500 3 THR A 16 -45.32 -135.12 REMARK 500 3 THR A 57 -28.70 -146.43 REMARK 500 3 PHE B 91 -176.03 -170.22 REMARK 500 3 PRO C 161 -76.84 -66.60 REMARK 500 3 ALA C 162 162.51 152.35 REMARK 500 4 HIS A 9 -50.32 -137.49 REMARK 500 4 THR A 57 -27.33 -147.18 REMARK 500 4 SER B 84 34.33 76.65 REMARK 500 4 ILE C 159 133.63 62.90 REMARK 500 4 PRO C 161 -82.14 -66.87 REMARK 500 4 ALA C 162 162.38 156.16 REMARK 500 5 GLN A 5 -69.36 -106.62 REMARK 500 5 THR A 16 -36.52 -133.76 REMARK 500 5 THR A 57 -29.88 -149.65 REMARK 500 5 SER B 84 51.97 77.02 REMARK 500 5 PRO C 161 -75.56 -66.77 REMARK 500 5 ALA C 162 162.84 152.19 REMARK 500 6 PRO A 14 1.82 -69.89 REMARK 500 6 THR A 57 -30.14 -151.46 REMARK 500 6 HIS B 68 175.59 -59.75 REMARK 500 6 MET B 69 173.11 -49.18 REMARK 500 6 LYS B 71 36.08 70.71 REMARK 500 6 SER B 116 -13.56 -140.27 REMARK 500 6 PRO C 161 -77.31 -67.34 REMARK 500 6 ALA C 162 162.28 152.49 REMARK 500 6 ARG C 178 59.87 37.55 REMARK 500 7 THR A 16 -30.26 -131.31 REMARK 500 7 ASN A 22 33.81 -148.31 REMARK 500 7 THR A 57 -27.09 -150.02 REMARK 500 7 LYS B 71 -70.95 -68.00 REMARK 500 7 LYS B 128 -89.79 -145.08 REMARK 500 7 ILE C 159 133.15 63.88 REMARK 500 7 PRO C 161 -85.18 -67.53 REMARK 500 7 ALA C 162 162.11 158.83 REMARK 500 8 THR A 57 -29.52 -149.84 REMARK 500 8 MET B 69 110.39 61.45 REMARK 500 8 LYS B 70 44.01 -94.52 REMARK 500 8 LYS B 117 9.78 59.83 REMARK 500 REMARK 500 THIS ENTRY HAS 158 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 ARG B 119 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18165 RELATED DB: BMRB DBREF 2LNH A 2 65 UNP O00401 WASL_HUMAN 207 270 DBREF 2LNH B 69 132 UNP Q9UHR4 BI2L1_HUMAN 339 402 DBREF 2LNH C 133 179 UNP P0DJ89 ESFU3_ECO57 221 267 SEQADV 2LNH GLY A 1 UNP O00401 EXPRESSION TAG SEQADV 2LNH GLY B 66 UNP Q9UHR4 EXPRESSION TAG SEQADV 2LNH SER B 67 UNP Q9UHR4 EXPRESSION TAG SEQADV 2LNH HIS B 68 UNP Q9UHR4 EXPRESSION TAG SEQADV 2LNH GLY C 132 UNP P0DJ89 EXPRESSION TAG SEQRES 1 A 65 GLY SER ASN PHE GLN HIS ILE GLY HIS VAL GLY TRP ASP SEQRES 2 A 65 PRO ASN THR GLY PHE ASP LEU ASN ASN LEU ASP PRO GLU SEQRES 3 A 65 LEU LYS ASN LEU PHE ASP MET CYS GLY ILE SER GLU ALA SEQRES 4 A 65 GLN LEU LYS ASP ARG GLU THR SER LYS VAL ILE TYR ASP SEQRES 5 A 65 PHE ILE GLU LYS THR GLY GLY VAL GLU ALA VAL LYS ASN SEQRES 1 B 67 GLY SER HIS MET LYS LYS GLN LYS VAL LYS THR ILE PHE SEQRES 2 B 67 PRO HIS THR ALA GLY SER ASN LYS THR LEU LEU SER PHE SEQRES 3 B 67 ALA GLN GLY ASP VAL ILE THR LEU LEU ILE PRO GLU GLU SEQRES 4 B 67 LYS ASP GLY TRP LEU TYR GLY GLU HIS ASP VAL SER LYS SEQRES 5 B 67 ALA ARG GLY TRP PHE PRO SER SER TYR THR LYS LEU LEU SEQRES 6 B 67 GLU GLU SEQRES 1 C 48 GLY LEU PRO ASP VAL ALA GLN ARG LEU MET GLN HIS LEU SEQRES 2 C 48 ALA GLU HIS GLY ILE GLN PRO ALA ARG ASN MET ALA GLU SEQRES 3 C 48 HIS ILE PRO PRO ALA PRO ASN TRP PRO ALA PRO THR PRO SEQRES 4 C 48 PRO VAL GLN ASN GLU GLN SER ARG PRO HELIX 1 1 LEU A 20 LEU A 23 5 4 HELIX 2 2 GLU A 26 GLY A 35 1 10 HELIX 3 3 SER A 37 LYS A 42 1 6 HELIX 4 4 THR A 46 GLY A 58 1 13 HELIX 5 5 GLY A 59 ASN A 65 1 7 HELIX 6 6 PRO C 134 ALA C 145 1 12 HELIX 7 7 PRO C 151 MET C 155 5 5 SHEET 1 A 2 TRP A 12 ASP A 13 0 SHEET 2 A 2 GLY A 17 PHE A 18 -1 O GLY A 17 N ASP A 13 SHEET 1 B 5 ARG B 119 PRO B 123 0 SHEET 2 B 5 TRP B 108 HIS B 113 -1 N LEU B 109 O PHE B 122 SHEET 3 B 5 VAL B 96 LEU B 99 -1 N THR B 98 O GLU B 112 SHEET 4 B 5 LYS B 73 THR B 76 -1 N VAL B 74 O ILE B 97 SHEET 5 B 5 THR B 127 LEU B 129 -1 O LYS B 128 N LYS B 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1