HEADER SIGNALING PROTEIN 05-JAN-12 2LNX TITLE SOLUTION STRUCTURE OF VAV2 SH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANINE NUCLEOTIDE EXCHANGE FACTOR VAV2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 659-771; COMPND 5 SYNONYM: VAV-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.WU,J.ZHANG,J.WU,Y.SHI REVDAT 2 14-JUN-23 2LNX 1 REMARK SEQADV REVDAT 1 21-NOV-12 2LNX 0 JRNL AUTH B.WU,F.WANG,J.ZHANG,Z.ZHANG,L.QIN,J.PENG,F.LI,J.LIU,G.LU, JRNL AUTH 2 Q.GONG,X.YAO,J.WU,Y.SHI JRNL TITL IDENTIFICATION AND STRUCTURAL BASIS FOR A NOVEL INTERACTION JRNL TITL 2 BETWEEN VAV2 AND ARAP3. JRNL REF J.STRUCT.BIOL. V. 180 84 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22750419 JRNL DOI 10.1016/J.JSB.2012.06.011 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LNX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1000102615. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] ENTITY-1, 5 REMARK 210 MM DTT-2, 75 MM SODIUM CHLORIDE- REMARK 210 3, 5 MM POTASSIUM PHOSPHATE-4, REMARK 210 20 MM SODIUM PHOSPHATE-5, 1 MM REMARK 210 EDTA-6, 90% H2O/10% D2O; 1 MM [U- REMARK 210 13C; U-15N] ENTITY-7, 75 MM REMARK 210 SODIUM CHLORIDE-8, 5 MM DTT-9, 5 REMARK 210 MM POTASSIUM PHOSPHATE-10, 20 MM REMARK 210 SODIUM PHOSPHATE-11, 1 MM EDTA- REMARK 210 12, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HCACO; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HBHA(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D HCCH- REMARK 210 TOCSY; 3D HCCH-COSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 650 REMARK 465 GLY A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 465 HIS A 655 REMARK 465 HIS A 656 REMARK 465 HIS A 657 REMARK 465 MET A 658 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 662 -178.61 -64.92 REMARK 500 1 ARG A 664 -174.00 -172.71 REMARK 500 1 GLU A 665 -145.52 -127.36 REMARK 500 1 ASN A 677 70.36 55.70 REMARK 500 1 PRO A 701 96.51 -69.62 REMARK 500 1 ALA A 704 -72.32 -89.46 REMARK 500 1 HIS A 730 133.25 -171.35 REMARK 500 1 ASP A 760 51.16 -119.67 REMARK 500 1 LYS A 764 -74.30 -100.16 REMARK 500 1 SER A 769 -82.76 -170.67 REMARK 500 1 ARG A 770 99.82 -167.35 REMARK 500 2 GLU A 665 149.16 -175.83 REMARK 500 2 ASN A 677 44.67 -94.02 REMARK 500 2 ARG A 700 94.80 -167.53 REMARK 500 2 ARG A 706 -67.21 -153.31 REMARK 500 2 GLU A 733 34.34 -96.24 REMARK 500 2 PRO A 766 -170.46 -66.57 REMARK 500 3 ARG A 660 77.97 -116.98 REMARK 500 3 ARG A 664 -40.67 -177.44 REMARK 500 3 ASP A 667 67.39 -107.54 REMARK 500 3 ALA A 702 -169.69 -163.21 REMARK 500 3 ALA A 704 -54.62 -155.12 REMARK 500 3 ARG A 706 34.09 -156.45 REMARK 500 3 THR A 732 -177.82 -179.58 REMARK 500 3 LYS A 764 -64.92 -106.09 REMARK 500 3 LYS A 768 -70.58 -94.33 REMARK 500 3 SER A 769 -81.35 -172.96 REMARK 500 3 ARG A 770 44.30 -152.30 REMARK 500 4 ARG A 660 117.62 -164.02 REMARK 500 4 ASP A 667 74.73 -109.04 REMARK 500 4 HIS A 730 143.23 -174.64 REMARK 500 4 THR A 732 -155.82 -130.06 REMARK 500 4 ASP A 760 78.27 -101.44 REMARK 500 4 LYS A 764 -68.93 -92.91 REMARK 500 4 LYS A 768 -78.40 -50.55 REMARK 500 4 SER A 769 108.30 175.30 REMARK 500 5 ASP A 667 75.57 -113.70 REMARK 500 5 ASN A 677 77.79 -69.62 REMARK 500 5 GLU A 733 35.94 -99.33 REMARK 500 5 LYS A 735 130.18 -171.16 REMARK 500 5 LEU A 759 74.91 -110.93 REMARK 500 5 LYS A 764 -62.10 -106.43 REMARK 500 5 LYS A 768 -73.48 -54.67 REMARK 500 5 SER A 769 105.38 -178.78 REMARK 500 6 SER A 663 -72.74 -116.02 REMARK 500 6 ARG A 664 87.95 -157.63 REMARK 500 6 ASP A 667 68.63 -113.85 REMARK 500 6 THR A 732 -159.56 -129.25 REMARK 500 6 GLU A 733 40.79 -100.33 REMARK 500 6 ALA A 734 -49.44 -158.47 REMARK 500 REMARK 500 THIS ENTRY HAS 195 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18183 RELATED DB: BMRB REMARK 900 RELATED ID: 2LNW RELATED DB: PDB DBREF 2LNX A 659 771 UNP P52735 VAV2_HUMAN 659 771 SEQADV 2LNX MET A 650 UNP P52735 EXPRESSION TAG SEQADV 2LNX GLY A 651 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 652 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 653 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 654 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 655 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 656 UNP P52735 EXPRESSION TAG SEQADV 2LNX HIS A 657 UNP P52735 EXPRESSION TAG SEQADV 2LNX MET A 658 UNP P52735 EXPRESSION TAG SEQRES 1 A 122 MET GLY HIS HIS HIS HIS HIS HIS MET SER ARG PRO PRO SEQRES 2 A 122 SER ARG GLU ILE ASP TYR THR ALA TYR PRO TRP PHE ALA SEQRES 3 A 122 GLY ASN MET GLU ARG GLN GLN THR ASP ASN LEU LEU LYS SEQRES 4 A 122 SER HIS ALA SER GLY THR TYR LEU ILE ARG GLU ARG PRO SEQRES 5 A 122 ALA GLU ALA GLU ARG PHE ALA ILE SER ILE LYS PHE ASN SEQRES 6 A 122 ASP GLU VAL LYS HIS ILE LYS VAL VAL GLU LYS ASP ASN SEQRES 7 A 122 TRP ILE HIS ILE THR GLU ALA LYS LYS PHE ASP SER LEU SEQRES 8 A 122 LEU GLU LEU VAL GLU TYR TYR GLN CYS HIS SER LEU LYS SEQRES 9 A 122 GLU SER PHE LYS GLN LEU ASP THR THR LEU LYS TYR PRO SEQRES 10 A 122 TYR LYS SER ARG GLU HELIX 1 1 ASP A 667 TYR A 671 5 5 HELIX 2 2 GLU A 679 LEU A 687 1 9 HELIX 3 3 SER A 739 HIS A 750 1 12 HELIX 4 4 SER A 751 SER A 755 5 5 SHEET 1 A 4 PHE A 674 GLY A 676 0 SHEET 2 A 4 THR A 694 GLU A 699 1 O ILE A 697 N ALA A 675 SHEET 3 A 4 PHE A 707 PHE A 713 -1 O SER A 710 N LEU A 696 SHEET 4 A 4 GLU A 716 LYS A 721 -1 O GLU A 716 N PHE A 713 SHEET 1 B 2 VAL A 723 LYS A 725 0 SHEET 2 B 2 TRP A 728 HIS A 730 -1 O HIS A 730 N VAL A 723 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1