HEADER MEMBRANE PROTEIN 30-JAN-12 2LP1 TITLE THE SOLUTION NMR STRUCTURE OF THE TRANSMEMBRANE C-TERMINAL DOMAIN OF TITLE 2 THE AMYLOID PRECURSOR PROTEIN (C99) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C99; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 683-728; COMPND 5 SYNONYM: AMYLOID BETA A4 PROTEIN, ABPP, APPI, APP, ALZHEIMER DISEASE COMPND 6 AMYLOID PROTEIN, CEREBRAL VASCULAR AMYLOID PEPTIDE, CVAP, PREA4, COMPND 7 PROTEASE NEXIN-II, PN-II; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: A4, AD1, APP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-21A KEYWDS AMYLOID PRECURSOR PROTEIN C-TERMINAL FRAGMENT, ALZHEIMER'S DISEASE, KEYWDS 2 MEMBRANE PROTEIN, AMYLOID-BETA PRECURSOR, TRANSMEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.J.BARRETT,Y.SONG,W.D.VAN HORN,E.J.HUSTEDT,J.M.SCHAFER, AUTHOR 2 A.HADZISELIMOVIC,A.J.BEEL,C.R.SANDERS REVDAT 3 01-MAY-24 2LP1 1 REMARK SEQADV REVDAT 2 20-JUN-12 2LP1 1 JRNL REVDAT 1 06-JUN-12 2LP1 0 JRNL AUTH P.J.BARRETT,Y.SONG,W.D.VAN HORN,E.J.HUSTEDT,J.M.SCHAFER, JRNL AUTH 2 A.HADZISELIMOVIC,A.J.BEEL,C.R.SANDERS JRNL TITL THE AMYLOID PRECURSOR PROTEIN HAS A FLEXIBLE TRANSMEMBRANE JRNL TITL 2 DOMAIN AND BINDS CHOLESTEROL. JRNL REF SCIENCE V. 336 1168 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22654059 JRNL DOI 10.1126/SCIENCE.1219988 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.24, X-PLOR NIH 2.24 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESTRAINED MOLECULAR DYNAMICS WITH REMARK 3 SIMULATED ANNEALING, FOLLOWED BY POWELL ENERGY MINIMIZATION REMARK 4 REMARK 4 2LP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102654. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 % LYSO MYRISTOYL REMARK 210 PHOSPHATIDYLGLYCEROL, 10 % [U-2H] REMARK 210 D2O, 100 MM IMIDAZOLE, 250 UM REMARK 210 [U-100% 15N] APP_C99, 1 MM EDTA, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC-TROSY; 3D HNCA; REMARK 210 3D HNCACB; 3D HN(CO)CA; 3D REMARK 210 HN(COCA)CB; 3D HNCO; 3D REMARK 210 GNOESYNHSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AMX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW LINUX9, SPARKY 3.114, REMARK 210 NMRPIPE LINUX9, TALOS LINUX9, REMARK 210 PROCHECKNMR 3.5.4, TOPSPIN 3 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 2D AND 3D EXPERIMENTS WERE TROSY BASED. FOR THE RDC REMARK 210 DATA COLLECTION, THE TROSY/SEMI-TROSY METHOD WAS USED. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 MET A 671 REMARK 465 ASP A 672 REMARK 465 ALA A 673 REMARK 465 GLU A 674 REMARK 465 PHE A 675 REMARK 465 ARG A 676 REMARK 465 HIS A 677 REMARK 465 ASP A 678 REMARK 465 SER A 679 REMARK 465 GLY A 680 REMARK 465 TYR A 681 REMARK 465 GLU A 682 REMARK 465 THR A 729 REMARK 465 SER A 730 REMARK 465 ILE A 731 REMARK 465 HIS A 732 REMARK 465 HIS A 733 REMARK 465 GLY A 734 REMARK 465 VAL A 735 REMARK 465 VAL A 736 REMARK 465 GLU A 737 REMARK 465 VAL A 738 REMARK 465 ASP A 739 REMARK 465 ALA A 740 REMARK 465 ALA A 741 REMARK 465 VAL A 742 REMARK 465 THR A 743 REMARK 465 PRO A 744 REMARK 465 GLU A 745 REMARK 465 GLU A 746 REMARK 465 ARG A 747 REMARK 465 HIS A 748 REMARK 465 LEU A 749 REMARK 465 SER A 750 REMARK 465 LYS A 751 REMARK 465 MET A 752 REMARK 465 GLN A 753 REMARK 465 GLN A 754 REMARK 465 ASN A 755 REMARK 465 GLY A 756 REMARK 465 TYR A 757 REMARK 465 GLU A 758 REMARK 465 ASN A 759 REMARK 465 PRO A 760 REMARK 465 THR A 761 REMARK 465 TYR A 762 REMARK 465 LYS A 763 REMARK 465 PHE A 764 REMARK 465 PHE A 765 REMARK 465 GLU A 766 REMARK 465 GLN A 767 REMARK 465 MET A 768 REMARK 465 GLN A 769 REMARK 465 ASN A 770 REMARK 465 GLN A 771 REMARK 465 GLY A 772 REMARK 465 ARG A 773 REMARK 465 ILE A 774 REMARK 465 LEU A 775 REMARK 465 GLN A 776 REMARK 465 ILE A 777 REMARK 465 SER A 778 REMARK 465 ILE A 779 REMARK 465 THR A 780 REMARK 465 LEU A 781 REMARK 465 ALA A 782 REMARK 465 ALA A 783 REMARK 465 ALA A 784 REMARK 465 LEU A 785 REMARK 465 GLU A 786 REMARK 465 HIS A 787 REMARK 465 HIS A 788 REMARK 465 HIS A 789 REMARK 465 HIS A 790 REMARK 465 HIS A 791 REMARK 465 HIS A 792 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 686 77.89 -151.03 REMARK 500 1 SER A 697 -85.96 -137.45 REMARK 500 1 ASN A 698 -111.34 -151.54 REMARK 500 1 LYS A 724 85.97 26.29 REMARK 500 1 GLN A 727 -141.67 54.48 REMARK 500 2 HIS A 684 -156.41 -98.79 REMARK 500 2 SER A 697 -50.06 -173.63 REMARK 500 2 LYS A 724 155.50 71.95 REMARK 500 2 LYS A 725 -72.01 -148.19 REMARK 500 2 LYS A 726 97.14 -166.70 REMARK 500 2 GLN A 727 -102.46 -167.34 REMARK 500 3 HIS A 685 -62.82 -102.14 REMARK 500 3 SER A 697 -165.38 -128.68 REMARK 500 3 ASN A 698 146.58 70.18 REMARK 500 3 LYS A 725 90.83 55.99 REMARK 500 3 LYS A 726 -54.01 -143.60 REMARK 500 4 HIS A 685 -88.94 -71.35 REMARK 500 4 GLN A 686 -113.14 51.15 REMARK 500 4 LYS A 726 -72.93 -60.69 REMARK 500 4 GLN A 727 83.53 -165.41 REMARK 500 5 HIS A 684 25.97 -155.44 REMARK 500 5 LYS A 687 -152.20 -133.27 REMARK 500 5 LEU A 688 -4.79 71.07 REMARK 500 5 SER A 697 -155.28 -128.20 REMARK 500 5 ASN A 698 116.10 58.31 REMARK 500 5 LYS A 724 37.16 35.17 REMARK 500 5 LYS A 725 -93.74 44.13 REMARK 500 5 LYS A 726 104.11 68.28 REMARK 500 5 GLN A 727 -44.23 -148.78 REMARK 500 6 HIS A 684 -87.52 -102.04 REMARK 500 6 HIS A 685 -161.23 52.62 REMARK 500 6 GLN A 686 -67.02 74.45 REMARK 500 6 PHE A 691 39.02 -83.86 REMARK 500 6 SER A 697 104.60 63.28 REMARK 500 6 ASN A 698 103.61 -172.16 REMARK 500 6 LYS A 725 102.24 69.90 REMARK 500 6 LYS A 726 -60.25 -100.07 REMARK 500 6 GLN A 727 -39.96 -135.32 REMARK 500 7 LEU A 688 -12.49 72.91 REMARK 500 7 SER A 697 -90.66 -168.05 REMARK 500 7 ASN A 698 -164.97 -109.75 REMARK 500 7 GLN A 727 102.61 -55.55 REMARK 500 8 HIS A 684 -9.47 -153.13 REMARK 500 8 GLN A 686 -82.76 -61.27 REMARK 500 8 LEU A 688 -43.48 -131.10 REMARK 500 8 ASN A 698 -175.33 64.82 REMARK 500 8 LYS A 724 -53.62 69.98 REMARK 500 8 GLN A 727 -125.85 -86.84 REMARK 500 9 HIS A 685 -40.23 -151.85 REMARK 500 9 LEU A 688 -45.40 80.15 REMARK 500 REMARK 500 THIS ENTRY HAS 150 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15775 RELATED DB: BMRB DBREF 2LP1 A 671 770 UNP P05067 A4_HUMAN 671 770 SEQADV 2LP1 GLN A 771 UNP P05067 EXPRESSION TAG SEQADV 2LP1 GLY A 772 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ARG A 773 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ILE A 774 UNP P05067 EXPRESSION TAG SEQADV 2LP1 LEU A 775 UNP P05067 EXPRESSION TAG SEQADV 2LP1 GLN A 776 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ILE A 777 UNP P05067 EXPRESSION TAG SEQADV 2LP1 SER A 778 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ILE A 779 UNP P05067 EXPRESSION TAG SEQADV 2LP1 THR A 780 UNP P05067 EXPRESSION TAG SEQADV 2LP1 LEU A 781 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ALA A 782 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ALA A 783 UNP P05067 EXPRESSION TAG SEQADV 2LP1 ALA A 784 UNP P05067 EXPRESSION TAG SEQADV 2LP1 LEU A 785 UNP P05067 EXPRESSION TAG SEQADV 2LP1 GLU A 786 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 787 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 788 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 789 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 790 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 791 UNP P05067 EXPRESSION TAG SEQADV 2LP1 HIS A 792 UNP P05067 EXPRESSION TAG SEQRES 1 A 122 MET ASP ALA GLU PHE ARG HIS ASP SER GLY TYR GLU VAL SEQRES 2 A 122 HIS HIS GLN LYS LEU VAL PHE PHE ALA GLU ASP VAL GLY SEQRES 3 A 122 SER ASN LYS GLY ALA ILE ILE GLY LEU MET VAL GLY GLY SEQRES 4 A 122 VAL VAL ILE ALA THR VAL ILE VAL ILE THR LEU VAL MET SEQRES 5 A 122 LEU LYS LYS LYS GLN TYR THR SER ILE HIS HIS GLY VAL SEQRES 6 A 122 VAL GLU VAL ASP ALA ALA VAL THR PRO GLU GLU ARG HIS SEQRES 7 A 122 LEU SER LYS MET GLN GLN ASN GLY TYR GLU ASN PRO THR SEQRES 8 A 122 TYR LYS PHE PHE GLU GLN MET GLN ASN GLN GLY ARG ILE SEQRES 9 A 122 LEU GLN ILE SER ILE THR LEU ALA ALA ALA LEU GLU HIS SEQRES 10 A 122 HIS HIS HIS HIS HIS HELIX 1 1 LYS A 687 GLY A 696 5 10 HELIX 2 2 GLY A 700 GLY A 708 1 9 HELIX 3 3 GLY A 708 LYS A 724 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1