HEADER TRANSFERASE/SIGNALING PROTEIN 31-JAN-12 2LP4 TITLE SOLUTION STRUCTURE OF P1-CHEY/P2 COMPLEX IN BACTERIAL CHEMOTAXIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS PROTEIN CHEA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 1-225; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CHEMOTAXIS PROTEIN CHEY; COMPND 9 CHAIN: Y; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CHEA, B1888, JW1877; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PQE12; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: CHEY, B1882, JW1871; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PCW KEYWDS TWO COMPONENT SIGNALING SYSTEM, HISTIDINE PHOSPHOTRANSFER DOMAIN, KEYWDS 2 RESPONSE REGULATOR, TRANSFERASE-SIGNALING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR F.DAHLQUIST,G.MO,H.ZHOU,T.KAMAMURA REVDAT 3 15-MAY-24 2LP4 1 REMARK REVDAT 2 14-JUN-23 2LP4 1 REMARK REVDAT 1 24-OCT-12 2LP4 0 JRNL AUTH G.MO,H.ZHOU,T.KAWAMURA,F.W.DAHLQUIST JRNL TITL SOLUTION STRUCTURE OF A COMPLEX OF THE HISTIDINE AUTOKINASE JRNL TITL 2 CHEA WITH ITS SUBSTRATE CHEY. JRNL REF BIOCHEMISTRY V. 51 3786 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22494339 JRNL DOI 10.1021/BI300147M REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ANSIG3.3, XPLOR-NIH REMARK 3 AUTHORS : KRAULIS (ANSIG3.3), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE AUTHORS STATE THAT THE STRUCTURE REMARK 3 CALCULATION USED X-RAY STRUCTURES SALMONELLA TYPHIMURIUM P1 REMARK 3 (1I5N) AND E. COLI CHEY/P2 (1EAY). THEY WERE CONFINED AS RIGID REMARK 3 BODIES EXCEPT FOR THE DOMAIN LINKERS. THE PROGRAM XPLOR-NIH WAS REMARK 3 USED TO REFINE THE STRUCTURES. REMARK 4 REMARK 4 2LP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102657. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200 MM [U-15N; U-2H] CHEY, 3000 REMARK 210 MM [U-2H] CHEA P1, 250 MM [U-2H] REMARK 210 CHEA P2, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-25 REMARK 470 RES CSSEQI ATOMS REMARK 470 LYS A 168 CD CE NZ REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 ARG Y 19 CG CD NE CZ NH1 NH2 REMARK 470 ARG Y 22 NE CZ NH1 NH2 REMARK 470 LYS Y 26 CG CD CE NZ REMARK 470 GLU Y 34 CD OE1 OE2 REMARK 470 GLU Y 89 CD OE1 OE2 REMARK 470 LYS Y 91 CE NZ REMARK 470 GLU Y 118 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 166 HA GLN A 220 1.32 REMARK 500 O ALA Y 98 H ALA Y 103 1.36 REMARK 500 O PHE Y 124 H MET Y 129 1.40 REMARK 500 C PRO A 159 H ARG A 160 1.41 REMARK 500 O VAL Y 40 H ASN Y 44 1.46 REMARK 500 O GLU Y 93 H ALA Y 97 1.47 REMARK 500 O ASP Y 38 H ALA Y 42 1.48 REMARK 500 OD1 ASP Y 38 H ASP Y 41 1.48 REMARK 500 O GLU A 171 H LEU A 175 1.50 REMARK 500 O LEU Y 25 H PHE Y 30 1.52 REMARK 500 O ALA Y 42 H LEU Y 46 1.55 REMARK 500 O GLU Y 5 HD21 ASN Y 32 1.56 REMARK 500 O ILE Y 20 H LEU Y 24 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 MET A 23 CG MET A 23 SD 0.160 REMARK 500 1 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 1 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 1 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 1 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 1 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 2 MET A 23 CG MET A 23 SD 0.159 REMARK 500 2 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 2 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 2 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 2 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 2 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 3 MET A 23 CG MET A 23 SD 0.159 REMARK 500 3 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 3 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 3 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 3 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 3 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 4 MET A 23 CG MET A 23 SD 0.159 REMARK 500 4 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 4 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 4 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 4 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 4 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 5 MET A 23 CG MET A 23 SD 0.158 REMARK 500 5 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 5 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 5 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 5 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 5 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 6 MET A 23 CG MET A 23 SD 0.160 REMARK 500 6 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 6 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 6 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 6 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 6 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 7 MET A 23 CG MET A 23 SD 0.160 REMARK 500 7 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 7 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 7 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 7 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 7 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 8 MET A 23 CG MET A 23 SD 0.162 REMARK 500 8 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 8 GLU A 217 CD GLU A 217 OE1 0.067 REMARK 500 8 GLU Y 5 CD GLU Y 5 OE2 0.067 REMARK 500 8 GLU Y 67 CD GLU Y 67 OE1 0.071 REMARK 500 8 GLU Y 125 CD GLU Y 125 OE1 0.066 REMARK 500 9 MET A 23 CG MET A 23 SD 0.159 REMARK 500 9 GLU A 178 CD GLU A 178 OE1 0.072 REMARK 500 REMARK 500 THIS ENTRY HAS 160 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 160 C - N - CA ANGL. DEV. = -22.7 DEGREES REMARK 500 1 ASP A 193 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 ASP A 193 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 1 ASP A 202 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 ASP A 202 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ASP A 206 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ASP A 207 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 ASP A 207 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 1 PHE A 214 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 1 ASP A 219 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 1 ASP Y 3 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 1 ASP Y 13 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 1 ASP Y 13 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 1 ARG Y 18 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ASP Y 38 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 1 ILE Y 55 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 1 ASP Y 57 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 1 ASP Y 75 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 ARG A 160 C - N - CA ANGL. DEV. = -29.2 DEGREES REMARK 500 2 ASP A 193 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 ASP A 193 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 2 ASP A 202 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 ASP A 202 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 2 ASP A 206 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 2 ASP A 207 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 ASP A 207 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 2 PHE A 214 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 2 ASP A 219 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 ASP Y 3 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 2 ASP Y 13 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 ASP Y 13 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 2 ARG Y 18 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 2 ASP Y 38 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 2 ILE Y 55 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 2 ASP Y 57 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 2 ASP Y 75 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 3 ARG A 160 C - N - CA ANGL. DEV. = -29.8 DEGREES REMARK 500 3 ASP A 193 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 3 ASP A 193 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 3 ASP A 202 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 3 ASP A 202 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 3 ASP A 206 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 ASP A 207 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 3 ASP A 207 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 3 PHE A 214 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 3 ASP A 219 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 3 ASP Y 3 CB - CG - OD1 ANGL. DEV. = -6.6 DEGREES REMARK 500 3 ASP Y 13 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 3 ASP Y 13 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 3 ARG Y 18 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 449 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 101.96 52.42 REMARK 500 1 MET A 3 85.89 -68.87 REMARK 500 1 ASP A 7 70.48 -150.41 REMARK 500 1 GLU A 133 80.47 73.32 REMARK 500 1 THR A 134 164.72 55.42 REMARK 500 1 ALA A 137 165.11 53.26 REMARK 500 1 SER A 142 -52.38 -166.74 REMARK 500 1 VAL A 143 -25.07 -37.28 REMARK 500 1 VAL A 144 -134.51 -56.57 REMARK 500 1 ALA A 145 100.03 -42.80 REMARK 500 1 GLU A 148 -176.79 48.89 REMARK 500 1 GLN A 150 160.80 -41.37 REMARK 500 1 GLN A 153 -46.79 174.01 REMARK 500 1 ARG A 155 128.33 61.78 REMARK 500 1 GLN A 157 39.99 173.56 REMARK 500 1 SER A 158 50.78 -119.17 REMARK 500 1 ARG A 160 131.05 67.20 REMARK 500 1 ARG A 166 63.72 62.39 REMARK 500 1 CYS A 213 -3.98 -56.00 REMARK 500 1 GLU A 224 134.15 -170.88 REMARK 500 1 ALA Y 48 -82.76 -77.72 REMARK 500 1 ASN Y 62 -34.98 80.51 REMARK 500 1 MET Y 63 125.07 -172.64 REMARK 500 1 SER Y 79 -19.45 -39.62 REMARK 500 2 MET A 3 -73.18 -109.62 REMARK 500 2 ASP A 4 -116.03 51.73 REMARK 500 2 ILE A 5 14.62 -147.58 REMARK 500 2 SER A 6 -79.71 -153.00 REMARK 500 2 ASP A 7 12.60 -18.42 REMARK 500 2 GLU A 133 85.97 31.29 REMARK 500 2 THR A 134 175.65 -48.42 REMARK 500 2 SER A 136 -26.13 76.63 REMARK 500 2 ALA A 137 -83.58 60.00 REMARK 500 2 LEU A 141 -172.00 -54.05 REMARK 500 2 VAL A 144 104.86 -46.37 REMARK 500 2 SER A 147 75.97 170.18 REMARK 500 2 GLN A 150 -148.28 58.30 REMARK 500 2 ASP A 151 -178.69 49.52 REMARK 500 2 GLN A 153 -107.07 19.34 REMARK 500 2 SER A 154 -78.06 -47.85 REMARK 500 2 ARG A 155 -100.09 166.63 REMARK 500 2 PRO A 159 -90.67 -82.34 REMARK 500 2 ARG A 166 63.72 62.39 REMARK 500 2 CYS A 213 -3.98 -56.00 REMARK 500 2 GLU A 224 134.15 -170.88 REMARK 500 2 ALA Y 48 -82.76 -77.72 REMARK 500 2 ASN Y 62 -34.98 80.51 REMARK 500 2 MET Y 63 125.07 -172.64 REMARK 500 2 SER Y 79 -19.45 -39.62 REMARK 500 3 SER A 2 -146.13 -147.85 REMARK 500 REMARK 500 THIS ENTRY HAS 581 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 6 ASP A 7 1 125.81 REMARK 500 ASP A 7 PHE A 8 1 121.82 REMARK 500 ASP A 7 PHE A 8 2 147.17 REMARK 500 ASP A 7 PHE A 8 3 131.85 REMARK 500 SER A 6 ASP A 7 4 -149.55 REMARK 500 ASP A 7 PHE A 8 4 -142.54 REMARK 500 SER A 6 ASP A 7 5 116.05 REMARK 500 ASP A 7 PHE A 8 5 146.54 REMARK 500 ASP A 7 PHE A 8 6 -133.36 REMARK 500 ASP A 7 PHE A 8 13 124.42 REMARK 500 SER A 6 ASP A 7 14 139.02 REMARK 500 ASP A 7 PHE A 8 16 147.13 REMARK 500 ASP A 7 PHE A 8 17 133.24 REMARK 500 ASP A 7 PHE A 8 18 132.26 REMARK 500 ASP A 7 PHE A 8 19 132.90 REMARK 500 SER A 6 ASP A 7 20 140.14 REMARK 500 SER A 6 ASP A 7 21 -149.81 REMARK 500 ASP A 7 PHE A 8 21 136.48 REMARK 500 ASP A 7 PHE A 8 23 131.18 REMARK 500 SER A 6 ASP A 7 25 88.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 45 0.24 SIDE CHAIN REMARK 500 1 ARG A 140 0.32 SIDE CHAIN REMARK 500 1 ARG A 155 0.21 SIDE CHAIN REMARK 500 1 ARG Y 18 0.13 SIDE CHAIN REMARK 500 2 ARG A 45 0.11 SIDE CHAIN REMARK 500 2 ARG A 140 0.29 SIDE CHAIN REMARK 500 2 ARG A 155 0.32 SIDE CHAIN REMARK 500 3 ARG A 45 0.25 SIDE CHAIN REMARK 500 3 ARG A 155 0.27 SIDE CHAIN REMARK 500 3 ARG Y 18 0.13 SIDE CHAIN REMARK 500 4 ARG A 45 0.29 SIDE CHAIN REMARK 500 4 ARG A 140 0.21 SIDE CHAIN REMARK 500 4 ARG A 155 0.31 SIDE CHAIN REMARK 500 4 ARG Y 18 0.25 SIDE CHAIN REMARK 500 5 ARG A 45 0.17 SIDE CHAIN REMARK 500 5 ARG A 140 0.29 SIDE CHAIN REMARK 500 5 ARG A 155 0.28 SIDE CHAIN REMARK 500 5 ARG Y 18 0.27 SIDE CHAIN REMARK 500 6 ARG A 45 0.16 SIDE CHAIN REMARK 500 6 ARG A 140 0.29 SIDE CHAIN REMARK 500 6 ARG A 155 0.27 SIDE CHAIN REMARK 500 6 ARG Y 18 0.19 SIDE CHAIN REMARK 500 7 ARG A 45 0.14 SIDE CHAIN REMARK 500 7 ARG A 140 0.25 SIDE CHAIN REMARK 500 7 ARG A 155 0.08 SIDE CHAIN REMARK 500 7 ARG Y 18 0.21 SIDE CHAIN REMARK 500 8 ARG A 45 0.27 SIDE CHAIN REMARK 500 8 ARG A 140 0.30 SIDE CHAIN REMARK 500 8 ARG A 155 0.22 SIDE CHAIN REMARK 500 8 ARG Y 18 0.26 SIDE CHAIN REMARK 500 9 ARG A 45 0.29 SIDE CHAIN REMARK 500 9 ARG A 140 0.28 SIDE CHAIN REMARK 500 9 ARG A 155 0.16 SIDE CHAIN REMARK 500 9 ARG Y 18 0.13 SIDE CHAIN REMARK 500 10 ARG A 45 0.08 SIDE CHAIN REMARK 500 10 ARG A 140 0.18 SIDE CHAIN REMARK 500 10 ARG A 155 0.17 SIDE CHAIN REMARK 500 10 ARG Y 18 0.29 SIDE CHAIN REMARK 500 11 ARG A 45 0.08 SIDE CHAIN REMARK 500 11 ARG A 140 0.25 SIDE CHAIN REMARK 500 11 ARG A 155 0.32 SIDE CHAIN REMARK 500 11 ARG Y 18 0.28 SIDE CHAIN REMARK 500 12 ARG A 45 0.27 SIDE CHAIN REMARK 500 12 ARG A 140 0.15 SIDE CHAIN REMARK 500 12 ARG A 155 0.25 SIDE CHAIN REMARK 500 13 ARG A 140 0.17 SIDE CHAIN REMARK 500 13 ARG Y 18 0.28 SIDE CHAIN REMARK 500 14 ARG A 45 0.15 SIDE CHAIN REMARK 500 14 ARG A 140 0.32 SIDE CHAIN REMARK 500 14 ARG Y 18 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 82 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1I5N RELATED DB: PDB REMARK 900 ENTRY WAS USE FOR CALCULATION IN THIS MOLECULAR SYSTEM. REMARK 900 RELATED ID: 1EAY RELATED DB: PDB REMARK 900 ENTRY WAS USE FOR CALCULATION IN THIS MOLECULAR SYSTEM. REMARK 900 RELATED ID: 18234 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHOR STATES THAT SINCE AN E.COLI P1 STRUCTURE IS NOT REMARK 999 AVAILABLE, THEIR STARTING STRUCTURE WAS GENERATED BY LINKING THE REMARK 999 SALMONELLA TYPHIMURIUM P1 (1I5N) AND E. COLI CHEY/P2 (1EAY), AND REMARK 999 THEY WERE REFINED USING THE EXPERIMENTAL CONSTRAINTS THEY OBTAINED REMARK 999 USING THE E.COLI P1. THE P1 PART OF THE MODELS THEY DEPOSITED, REMARK 999 THEREFORE, IS THE SALMONELLA P1, AND THESE CONFLICTS REFLECT THE REMARK 999 DIFFERENCES IN SEQUENCE IN SALMONELLA P1 (2LP4) AND E. COLI P1. DBREF 2LP4 A 1 225 UNP P07363 CHEA_ECOLI 1 225 DBREF 2LP4 Y 2 129 UNP P0AE67 CHEY_ECOLI 2 129 SEQADV 2LP4 ASP A 29 UNP P07363 VAL 29 SEE REMARK 999 SEQADV 2LP4 VAL A 31 UNP P07363 GLN 31 SEE REMARK 999 SEQADV 2LP4 SER A 34 UNP P07363 ALA 34 SEE REMARK 999 SEQADV 2LP4 THR A 60 UNP P07363 SER 60 SEE REMARK 999 SEQADV 2LP4 ILE A 61 UNP P07363 VAL 61 SEE REMARK 999 SEQADV 2LP4 ASN A 107 UNP P07363 GLN 107 SEE REMARK 999 SEQADV 2LP4 GLU A 109 UNP P07363 GLN 109 SEE REMARK 999 SEQADV 2LP4 GLU A 117 UNP P07363 ASP 117 SEE REMARK 999 SEQADV 2LP4 ASN A 121 UNP P07363 GLN 121 SEE REMARK 999 SEQRES 1 A 225 MET SER MET ASP ILE SER ASP PHE TYR GLN THR PHE PHE SEQRES 2 A 225 ASP GLU ALA ASP GLU LEU LEU ALA ASP MET GLU GLN HIS SEQRES 3 A 225 LEU LEU ASP LEU VAL PRO GLU SER PRO ASP ALA GLU GLN SEQRES 4 A 225 LEU ASN ALA ILE PHE ARG ALA ALA HIS SER ILE LYS GLY SEQRES 5 A 225 GLY ALA GLY THR PHE GLY PHE THR ILE LEU GLN GLU THR SEQRES 6 A 225 THR HIS LEU MET GLU ASN LEU LEU ASP GLU ALA ARG ARG SEQRES 7 A 225 GLY GLU MET GLN LEU ASN THR ASP ILE ILE ASN LEU PHE SEQRES 8 A 225 LEU GLU THR LYS ASP ILE MET GLN GLU GLN LEU ASP ALA SEQRES 9 A 225 TYR LYS ASN SER GLU GLU PRO ASP ALA ALA SER PHE GLU SEQRES 10 A 225 TYR ILE CYS ASN ALA LEU ARG GLN LEU ALA LEU GLU ALA SEQRES 11 A 225 LYS GLY GLU THR PRO SER ALA VAL THR ARG LEU SER VAL SEQRES 12 A 225 VAL ALA LYS SER GLU PRO GLN ASP GLU GLN SER ARG SER SEQRES 13 A 225 GLN SER PRO ARG ARG ILE ILE LEU SER ARG LEU LYS ALA SEQRES 14 A 225 GLY GLU VAL ASP LEU LEU GLU GLU GLU LEU GLY HIS LEU SEQRES 15 A 225 THR THR LEU THR ASP VAL VAL LYS GLY ALA ASP SER LEU SEQRES 16 A 225 SER ALA ILE LEU PRO GLY ASP ILE ALA GLU ASP ASP ILE SEQRES 17 A 225 THR ALA VAL LEU CYS PHE VAL ILE GLU ALA ASP GLN ILE SEQRES 18 A 225 THR PHE GLU THR SEQRES 1 Y 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP ASP PHE SEQRES 2 Y 128 SER THR MET ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 Y 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 Y 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 Y 128 VAL ILE SER ASP TRP ASN MET PRO ASN MET ASP GLY LEU SEQRES 6 Y 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MET SER SEQRES 7 Y 128 ALA LEU PRO VAL LEU MET VAL THR ALA GLU ALA LYS LYS SEQRES 8 Y 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 Y 128 TYR VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 Y 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MET HELIX 1 1 ASP A 4 ASP A 7 5 4 HELIX 2 2 PHE A 8 LEU A 30 1 23 HELIX 3 3 ASP A 36 PHE A 57 1 22 HELIX 4 4 PHE A 59 ARG A 78 1 20 HELIX 5 5 ASN A 84 ASN A 107 1 24 HELIX 6 6 ASP A 112 LYS A 131 1 20 HELIX 7 7 GLY A 170 THR A 183 1 14 HELIX 8 8 ALA A 204 CYS A 213 1 10 HELIX 9 9 PHE Y 14 LEU Y 28 1 15 HELIX 10 10 ASP Y 38 GLY Y 49 1 12 HELIX 11 11 ASP Y 64 ASP Y 75 1 12 HELIX 12 12 LYS Y 91 ALA Y 101 1 11 HELIX 13 13 THR Y 112 GLY Y 128 1 17 SHEET 1 A 4 THR A 186 LYS A 190 0 SHEET 2 A 4 LEU A 195 ILE A 198 -1 O ILE A 198 N THR A 186 SHEET 3 A 4 ARG A 161 LEU A 164 -1 N LEU A 164 O LEU A 195 SHEET 4 A 4 ILE A 221 PHE A 223 -1 O THR A 222 N ILE A 163 SHEET 1 B 5 VAL Y 33 ALA Y 36 0 SHEET 2 B 5 PHE Y 8 VAL Y 11 1 N VAL Y 10 O GLU Y 34 SHEET 3 B 5 PHE Y 53 ASP Y 57 1 O ILE Y 55 N VAL Y 11 SHEET 4 B 5 VAL Y 83 THR Y 87 1 O LEU Y 84 N VAL Y 54 SHEET 5 B 5 GLY Y 105 VAL Y 108 1 O VAL Y 107 N THR Y 87 CISPEP 1 LYS Y 109 PRO Y 110 1 -2.59 CISPEP 2 LYS Y 109 PRO Y 110 2 -2.59 CISPEP 3 LYS Y 109 PRO Y 110 3 -2.59 CISPEP 4 LYS Y 109 PRO Y 110 4 -2.59 CISPEP 5 LYS Y 109 PRO Y 110 5 -2.59 CISPEP 6 LYS Y 109 PRO Y 110 6 -2.59 CISPEP 7 LYS Y 109 PRO Y 110 7 -2.59 CISPEP 8 LYS Y 109 PRO Y 110 8 -2.59 CISPEP 9 LYS Y 109 PRO Y 110 9 -2.59 CISPEP 10 LYS Y 109 PRO Y 110 10 -2.59 CISPEP 11 LYS Y 109 PRO Y 110 11 -2.59 CISPEP 12 LYS Y 109 PRO Y 110 12 -2.59 CISPEP 13 LYS Y 109 PRO Y 110 13 -2.59 CISPEP 14 LYS Y 109 PRO Y 110 14 -2.59 CISPEP 15 LYS Y 109 PRO Y 110 15 -2.59 CISPEP 16 LYS Y 109 PRO Y 110 16 -2.59 CISPEP 17 LYS Y 109 PRO Y 110 17 -2.59 CISPEP 18 LYS Y 109 PRO Y 110 18 -2.59 CISPEP 19 LYS Y 109 PRO Y 110 19 -2.59 CISPEP 20 LYS Y 109 PRO Y 110 20 -2.59 CISPEP 21 LYS Y 109 PRO Y 110 21 -2.59 CISPEP 22 LYS Y 109 PRO Y 110 22 -2.59 CISPEP 23 LYS Y 109 PRO Y 110 23 -2.59 CISPEP 24 LYS Y 109 PRO Y 110 24 -2.59 CISPEP 25 LYS Y 109 PRO Y 110 25 -2.59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1