HEADER TRANSCRIPTION REGULATOR 15-FEB-12 2LPM TITLE CHEMICAL SHIFT AND STRUCTURE ASSIGNMENTS FOR SMA0114 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-COMPONENT RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 266834; SOURCE 4 STRAIN: 1021; SOURCE 5 GENE: RA0058, SMA0114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28+ KEYWDS TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.R.SHEFTIC,D.J.GAGE,A.T.ALEXANDRESCU REVDAT 3 01-MAY-24 2LPM 1 SEQADV REVDAT 2 19-SEP-12 2LPM 1 JRNL REVDAT 1 12-SEP-12 2LPM 0 JRNL AUTH S.R.SHEFTIC,P.P.GARCIA,E.WHITE,V.L.ROBINSON,D.J.GAGE, JRNL AUTH 2 A.T.ALEXANDRESCU JRNL TITL NUCLEAR MAGNETIC RESONANCE STRUCTURE AND DYNAMICS OF THE JRNL TITL 2 RESPONSE REGULATOR SMA0114 FROM SINORHIZOBIUM MELILOTI. JRNL REF BIOCHEMISTRY V. 51 6932 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22880754 JRNL DOI 10.1021/BI300922Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR, X-PLOR REMARK 3 AUTHORS : BRUNGER (X-PLOR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA-DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING REMARK 4 REMARK 4 2LPM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102675. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 1 MM DTT, 10 % 10% D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 98 H ILE A 100 1.46 REMARK 500 O ALA A 21 H ILE A 24 1.46 REMARK 500 O VAL A 71 H LEU A 75 1.49 REMARK 500 O ASP A 109 H GLU A 113 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 10.82 -141.39 REMARK 500 1 GLU A 6 27.16 -140.28 REMARK 500 1 ARG A 7 98.11 64.24 REMARK 500 1 LEU A 12 86.10 -69.14 REMARK 500 1 GLU A 15 -53.13 -176.43 REMARK 500 1 ASP A 16 -96.49 -134.30 REMARK 500 1 GLU A 17 -86.41 -153.24 REMARK 500 1 ALA A 21 -87.53 -73.10 REMARK 500 1 HIS A 33 172.39 -46.05 REMARK 500 1 GLU A 34 50.73 -108.30 REMARK 500 1 VAL A 35 152.47 50.72 REMARK 500 1 ALA A 36 -95.54 -159.24 REMARK 500 1 ALA A 39 -178.87 57.06 REMARK 500 1 GLN A 53 67.51 -152.10 REMARK 500 1 PHE A 54 31.05 -140.72 REMARK 500 1 ASP A 55 -62.64 61.13 REMARK 500 1 ILE A 59 74.49 -155.59 REMARK 500 1 ASN A 62 12.67 -159.62 REMARK 500 1 ASP A 64 -0.26 63.59 REMARK 500 1 GLU A 66 54.28 37.60 REMARK 500 1 TYR A 69 170.37 46.87 REMARK 500 1 ASN A 79 140.48 55.28 REMARK 500 1 PHE A 82 -137.98 174.05 REMARK 500 1 SER A 90 -84.02 62.63 REMARK 500 1 LYS A 91 35.95 124.75 REMARK 500 1 LEU A 93 153.42 -38.08 REMARK 500 1 SER A 98 61.64 102.99 REMARK 500 1 ASN A 99 -56.35 62.08 REMARK 500 1 ILE A 100 -136.30 49.95 REMARK 500 1 THR A 104 29.76 179.31 REMARK 500 1 PRO A 106 36.40 -83.08 REMARK 500 1 PHE A 107 121.32 71.03 REMARK 500 1 LEU A 108 -105.18 177.90 REMARK 500 1 SER A 110 -71.59 -46.04 REMARK 500 1 SER A 120 -45.34 81.44 REMARK 500 1 LYS A 121 102.23 56.97 REMARK 500 1 GLU A 122 28.95 40.91 REMARK 500 2 HIS A 3 -154.91 43.87 REMARK 500 2 GLU A 6 73.77 -176.22 REMARK 500 2 GLU A 15 109.60 157.28 REMARK 500 2 ASP A 16 133.33 78.99 REMARK 500 2 ALA A 21 -96.06 -56.53 REMARK 500 2 HIS A 33 141.67 -36.26 REMARK 500 2 ALA A 39 170.44 52.91 REMARK 500 2 GLN A 53 -18.95 -147.42 REMARK 500 2 PHE A 54 164.55 -42.26 REMARK 500 2 ILE A 59 78.83 -153.95 REMARK 500 2 ASP A 60 125.97 -39.38 REMARK 500 2 ASN A 62 15.36 -142.50 REMARK 500 2 ASP A 64 -14.68 75.76 REMARK 500 REMARK 500 THIS ENTRY HAS 706 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.32 SIDE CHAIN REMARK 500 1 ARG A 8 0.29 SIDE CHAIN REMARK 500 1 ARG A 10 0.27 SIDE CHAIN REMARK 500 1 ARG A 41 0.19 SIDE CHAIN REMARK 500 1 ARG A 50 0.21 SIDE CHAIN REMARK 500 1 ARG A 78 0.18 SIDE CHAIN REMARK 500 1 ARG A 96 0.30 SIDE CHAIN REMARK 500 2 ARG A 7 0.22 SIDE CHAIN REMARK 500 2 ARG A 8 0.25 SIDE CHAIN REMARK 500 2 ARG A 10 0.23 SIDE CHAIN REMARK 500 2 ARG A 50 0.14 SIDE CHAIN REMARK 500 2 ARG A 78 0.32 SIDE CHAIN REMARK 500 2 ARG A 96 0.22 SIDE CHAIN REMARK 500 3 ARG A 7 0.24 SIDE CHAIN REMARK 500 3 ARG A 8 0.29 SIDE CHAIN REMARK 500 3 ARG A 10 0.26 SIDE CHAIN REMARK 500 3 ARG A 41 0.29 SIDE CHAIN REMARK 500 3 ARG A 50 0.19 SIDE CHAIN REMARK 500 3 ARG A 96 0.31 SIDE CHAIN REMARK 500 4 ARG A 7 0.30 SIDE CHAIN REMARK 500 4 ARG A 8 0.30 SIDE CHAIN REMARK 500 4 ARG A 41 0.27 SIDE CHAIN REMARK 500 4 ARG A 50 0.30 SIDE CHAIN REMARK 500 4 ARG A 78 0.31 SIDE CHAIN REMARK 500 4 ARG A 96 0.22 SIDE CHAIN REMARK 500 5 ARG A 7 0.08 SIDE CHAIN REMARK 500 5 ARG A 8 0.24 SIDE CHAIN REMARK 500 5 ARG A 10 0.25 SIDE CHAIN REMARK 500 5 ARG A 41 0.28 SIDE CHAIN REMARK 500 5 ARG A 50 0.31 SIDE CHAIN REMARK 500 5 ARG A 78 0.27 SIDE CHAIN REMARK 500 5 ARG A 96 0.30 SIDE CHAIN REMARK 500 6 ARG A 7 0.20 SIDE CHAIN REMARK 500 6 ARG A 8 0.31 SIDE CHAIN REMARK 500 6 ARG A 10 0.28 SIDE CHAIN REMARK 500 6 ARG A 41 0.22 SIDE CHAIN REMARK 500 6 ARG A 50 0.29 SIDE CHAIN REMARK 500 6 ARG A 78 0.27 SIDE CHAIN REMARK 500 6 ARG A 96 0.24 SIDE CHAIN REMARK 500 7 ARG A 7 0.17 SIDE CHAIN REMARK 500 7 ARG A 8 0.31 SIDE CHAIN REMARK 500 7 ARG A 10 0.31 SIDE CHAIN REMARK 500 7 ARG A 41 0.32 SIDE CHAIN REMARK 500 7 ARG A 50 0.29 SIDE CHAIN REMARK 500 7 ARG A 78 0.26 SIDE CHAIN REMARK 500 7 ARG A 96 0.29 SIDE CHAIN REMARK 500 8 ARG A 7 0.20 SIDE CHAIN REMARK 500 8 ARG A 8 0.31 SIDE CHAIN REMARK 500 8 ARG A 10 0.28 SIDE CHAIN REMARK 500 8 ARG A 41 0.25 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 133 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16905 RELATED DB: BMRB REMARK 900 NMR CHEMICAL SHIFT ASSIGNMENTS FOR SMA0114 DBREF 2LPM A 4 123 UNP Q930Y6 Q930Y6_RHIME 1 120 SEQADV 2LPM GLY A 1 UNP Q930Y6 EXPRESSION TAG SEQADV 2LPM SER A 2 UNP Q930Y6 EXPRESSION TAG SEQADV 2LPM HIS A 3 UNP Q930Y6 EXPRESSION TAG SEQRES 1 A 123 GLY SER HIS MET THR GLU ARG ARG LEU ARG VAL LEU VAL SEQRES 2 A 123 VAL GLU ASP GLU SER MET ILE ALA MET LEU ILE GLU ASP SEQRES 3 A 123 THR LEU CYS GLU LEU GLY HIS GLU VAL ALA ALA THR ALA SEQRES 4 A 123 SER ARG MET GLN GLU ALA LEU ASP ILE ALA ARG LYS GLY SEQRES 5 A 123 GLN PHE ASP ILE ALA ILE ILE ASP VAL ASN LEU ASP GLY SEQRES 6 A 123 GLU PRO SER TYR PRO VAL ALA ASP ILE LEU ALA GLU ARG SEQRES 7 A 123 ASN VAL PRO PHE ILE PHE ALA THR GLY TYR GLY SER LYS SEQRES 8 A 123 GLY LEU ASP THR ARG TYR SER ASN ILE PRO LEU LEU THR SEQRES 9 A 123 LYS PRO PHE LEU ASP SER GLU LEU GLU ALA VAL LEU VAL SEQRES 10 A 123 GLN ILE SER LYS GLU VAL HELIX 1 1 ALA A 21 GLY A 32 1 12 HELIX 2 2 ARG A 41 GLY A 52 1 12 HELIX 3 3 SER A 68 ARG A 78 1 11 HELIX 4 4 LEU A 108 VAL A 117 1 10 SHEET 1 A 2 VAL A 11 VAL A 14 0 SHEET 2 A 2 ILE A 56 ILE A 59 1 O ILE A 58 N LEU A 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1