HEADER PROTEIN TRANSPORT 19-FEB-12 2LPU TITLE SOLUTION STRUCTURES OF KMATG10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KMATG10; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLUYVEROMYCES MARXIANUS; SOURCE 3 ORGANISM_TAXID: 4911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX6P KEYWDS AUTOPHAGY, E2-LIKE, ATG10, PROTEOLYSIS, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YAMAGUCHI,N.N.NODA,H.YAMAMOTO,T.SHIMA,H.KUMETA,Y.KOBASHIGAWA, AUTHOR 2 R.AKADA,Y.OHSUMI,F.INAGAKI REVDAT 3 15-MAY-24 2LPU 1 REMARK REVDAT 2 14-JUN-23 2LPU 1 REMARK REVDAT 1 01-AUG-12 2LPU 0 JRNL AUTH M.YAMAGUCHI,N.N.NODA,H.YAMAMOTO,T.SHIMA,H.KUMETA, JRNL AUTH 2 Y.KOBASHIGAWA,R.AKADA,Y.OHSUMI,F.INAGAKI JRNL TITL STRUCTURAL INSIGHTS INTO ATG10-MEDIATED FORMATION OF THE JRNL TITL 2 AUTOPHAGY-ESSENTIAL ATG12-ATG5 CONJUGATE JRNL REF STRUCTURE V. 20 1244 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22682742 JRNL DOI 10.1016/J.STR.2012.04.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, SPARKY 3.113, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GODDARD (SPARKY), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102682. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 KMATG10-1, 50 MM SODIUM REMARK 210 PHOSPHATE-2, 100 MM SODIUM REMARK 210 CHLORIDE-3, 5 MM DTT-4, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HNCA; 3D HBHA(CO)NH; 3D HN(CA) REMARK 210 HA; 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY ALIPHATIC; REMARK 210 2D HBCBCGCDHD; 2D HBCBCGCDCEHE; REMARK 210 3D HCCH-TOCSY AROMATIC; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA REMARK 210 SPECTROMETER MANUFACTURER : AGILENT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2010.176.13.55, SPARKY REMARK 210 3.113, TALOS+ 1.01, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 PRO A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 106.94 -50.59 REMARK 500 1 GLN A 31 32.34 -91.04 REMARK 500 1 ASP A 32 32.24 -168.35 REMARK 500 1 ASP A 73 53.56 81.69 REMARK 500 1 SER A 75 44.17 74.78 REMARK 500 1 SER A 83 -175.86 -69.05 REMARK 500 1 PHE A 96 -170.84 -67.27 REMARK 500 1 TYR A 111 79.42 -111.04 REMARK 500 1 ASP A 117 76.01 -112.22 REMARK 500 1 ASN A 121 -64.35 -94.57 REMARK 500 1 ASP A 125 92.55 -51.57 REMARK 500 1 HIS A 128 46.95 -109.65 REMARK 500 2 MET A 1 22.93 47.16 REMARK 500 2 GLN A 31 92.33 -62.55 REMARK 500 2 ASP A 32 48.93 71.82 REMARK 500 2 SER A 75 44.80 79.11 REMARK 500 2 SER A 83 -168.62 -71.94 REMARK 500 2 SER A 85 -30.45 -39.23 REMARK 500 2 TYR A 111 74.08 -117.88 REMARK 500 2 ASP A 117 57.62 -92.72 REMARK 500 2 VAL A 122 -65.31 -93.89 REMARK 500 2 SER A 124 -75.76 -82.85 REMARK 500 3 LEU A 2 103.82 -50.68 REMARK 500 3 GLN A 31 37.41 -91.70 REMARK 500 3 ASP A 32 36.57 -177.34 REMARK 500 3 ARG A 39 79.21 -108.19 REMARK 500 3 ASP A 73 52.29 81.77 REMARK 500 3 SER A 75 41.86 70.75 REMARK 500 3 SER A 83 -171.97 -65.30 REMARK 500 3 SER A 124 -80.30 -73.93 REMARK 500 4 LEU A 2 98.37 -50.25 REMARK 500 4 THR A 3 -167.09 -73.18 REMARK 500 4 GLN A 31 92.58 -66.45 REMARK 500 4 ASP A 32 49.29 74.03 REMARK 500 4 ASP A 73 48.46 81.74 REMARK 500 4 SER A 75 43.34 73.56 REMARK 500 4 SER A 83 -168.31 -71.07 REMARK 500 4 ASN A 115 28.95 -141.67 REMARK 500 4 ASN A 121 -69.85 -94.53 REMARK 500 4 SER A 124 142.15 -38.09 REMARK 500 4 ASP A 125 -178.23 -61.79 REMARK 500 5 MET A 1 22.93 46.91 REMARK 500 5 ASP A 32 26.18 -153.93 REMARK 500 5 ARG A 39 78.92 -106.10 REMARK 500 5 ASP A 73 50.68 81.85 REMARK 500 5 SER A 75 42.64 80.09 REMARK 500 5 SER A 83 -176.19 -57.70 REMARK 500 5 SER A 124 -76.27 -96.19 REMARK 500 6 LEU A 2 100.88 -50.63 REMARK 500 6 THR A 3 -172.74 -64.88 REMARK 500 REMARK 500 THIS ENTRY HAS 202 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18277 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. N-TERMINAL RESIDUES GPLGS ARE CLONING ARTIFACT. DBREF 2LPU A -4 147 PDB 2LPU 2LPU -4 147 SEQRES 1 A 152 GLY PRO LEU PRO SER MET LEU THR LEU PRO GLU TYR ASN SEQRES 2 A 152 GLU GLN ILE PRO ASN VAL ARG SER LEU LEU THR LYS TRP SEQRES 3 A 152 ALA LYS VAL GLU ARG ILE GLN ASP VAL GLN ASP GLY LEU SEQRES 4 A 152 GLN LEU ASP VAL ARG LEU LYS THR ASP THR LEU LEU GLU SEQRES 5 A 152 LEU HIS ILE TYR TYR ASP HIS VAL TYR HIS VAL PRO SER SEQRES 6 A 152 ILE LYS PHE ARG LEU TRP SER LEU ASP THR GLU GLU ASP SEQRES 7 A 152 ILE SER SER LEU ARG LEU LEU THR LEU SER ASP SER GLU SEQRES 8 A 152 LEU ARG SER ILE LEU ASN LEU GLY THR PHE SER VAL THR SEQRES 9 A 152 LEU SER THR ASP MET GLU MET LYS SER VAL TYR TYR TYR SEQRES 10 A 152 ILE ASN ASN CYS ASP THR ASP ALA ASN VAL GLY SER ASP SEQRES 11 A 152 VAL GLU HIS TYR LEU THR ARG TRP ILE SER LEU TYR ILE SEQRES 12 A 152 ARG ILE PHE ASP LEU ASN PHE VAL PRO HELIX 1 1 THR A 3 ASN A 8 1 6 HELIX 2 2 GLN A 10 THR A 19 1 10 HELIX 3 3 SER A 83 ARG A 88 1 6 HELIX 4 4 HIS A 128 ILE A 138 1 11 SHEET 1 A 6 VAL A 24 VAL A 30 0 SHEET 2 A 6 GLY A 33 LYS A 41 -1 O GLN A 35 N GLN A 28 SHEET 3 A 6 THR A 44 ASP A 53 -1 O LEU A 46 N VAL A 38 SHEET 4 A 6 VAL A 58 TRP A 66 -1 O VAL A 58 N ASP A 53 SHEET 5 A 6 VAL A 109 ILE A 113 -1 O TYR A 111 N PHE A 63 SHEET 6 A 6 VAL A 98 THR A 102 -1 N THR A 99 O TYR A 112 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1