HEADER VIRAL PROTEIN 20-FEB-12 2LPY OBSLTE 01-MAR-23 2LPY 5LMY TITLE SOLUTION STRUCTURE OF THE M-PMV MYRISTOYLATED MATRIX PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATRIX PROTEIN P10; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-118; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MASON-PFIZER MONKEY VIRUS; SOURCE 3 ORGANISM_COMMON: MPMV; SOURCE 4 ORGANISM_TAXID: 11855; SOURCE 5 GENE: GAG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET22B KEYWDS GAG, MYRISTOYLATED, MYRISTATE, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR J.PRCHAL,R.HRABAL REVDAT 3 01-MAR-23 2LPY 1 OBSLTE REMARK SEQADV LINK REVDAT 2 17-OCT-12 2LPY 1 JRNL REVDAT 1 22-AUG-12 2LPY 0 JRNL AUTH J.PRCHAL,P.SRB,E.HUNTER,T.RUML,R.HRABAL JRNL TITL THE STRUCTURE OF MYRISTOYLATED MASON-PFIZER MONKEY VIRUS JRNL TITL 2 MATRIX PROTEIN AND THE ROLE OF JRNL TITL 3 PHOSPHATIDYLINOSITOL-(4,5)-BISPHOSPHATE IN ITS MEMBRANE JRNL TITL 4 BINDING. JRNL REF J.MOL.BIOL. V. 423 427 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22863803 JRNL DOI 10.1016/J.JMB.2012.07.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.24, X-PLOR NIH 2.24 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1000102686. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : 0.4 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 MM POTASSIUM PHOSPHATE, 300 REMARK 210 MM SODIUM CHLORIDE, 5 MM DTT, REMARK 210 0.5 MM [U-99% 13C; U-99% 15N] M- REMARK 210 PMV MATRIX PROTEIN, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.3, CCPNMR_ANALISIS, REMARK 210 NMRPIPE, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 27 H ASP A 30 1.58 REMARK 500 N GLY A 2 C2 MYR A 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 42 57.60 37.72 REMARK 500 1 PRO A 46 -7.24 -51.14 REMARK 500 1 THR A 69 -17.08 -48.35 REMARK 500 1 VAL A 75 93.05 31.77 REMARK 500 1 ASN A 96 157.22 -40.48 REMARK 500 1 PRO A 97 -13.00 -45.62 REMARK 500 1 GLU A 107 -163.38 -66.27 REMARK 500 1 GLN A 115 -165.98 -56.13 REMARK 500 2 ARG A 22 21.30 -73.16 REMARK 500 2 TYR A 28 -33.33 -38.83 REMARK 500 2 PRO A 46 -9.62 -52.39 REMARK 500 2 VAL A 75 90.00 20.87 REMARK 500 2 GLN A 105 -116.50 47.92 REMARK 500 2 ILE A 109 -13.16 -48.66 REMARK 500 3 CYS A 42 61.02 33.78 REMARK 500 3 PRO A 46 -19.00 -38.48 REMARK 500 3 VAL A 75 91.69 56.46 REMARK 500 3 GLU A 94 47.65 -73.40 REMARK 500 3 GLN A 105 49.79 -109.35 REMARK 500 3 ILE A 109 -0.78 -56.37 REMARK 500 3 GLN A 115 148.57 56.95 REMARK 500 3 ASP A 117 -33.94 -33.75 REMARK 500 4 PRO A 46 -7.76 -51.82 REMARK 500 4 VAL A 75 84.06 38.51 REMARK 500 4 ASP A 91 -14.06 -47.03 REMARK 500 4 GLU A 94 55.17 -105.79 REMARK 500 4 VAL A 95 -75.48 -45.27 REMARK 500 4 GLN A 98 -18.63 -45.88 REMARK 500 4 GLU A 107 -169.37 44.39 REMARK 500 4 ILE A 109 -12.43 -47.69 REMARK 500 5 ARG A 22 10.24 -69.05 REMARK 500 5 TRP A 44 0.47 -64.75 REMARK 500 5 PRO A 46 -7.17 -59.23 REMARK 500 5 VAL A 75 94.16 36.31 REMARK 500 5 PRO A 97 -12.93 -42.61 REMARK 500 5 GLN A 105 -85.35 52.08 REMARK 500 5 ILE A 109 -17.06 -46.34 REMARK 500 5 SER A 112 -161.44 38.66 REMARK 500 5 GLN A 115 34.58 -86.92 REMARK 500 6 VAL A 75 115.57 57.38 REMARK 500 6 LYS A 93 -68.11 79.63 REMARK 500 6 ASN A 96 167.04 -42.19 REMARK 500 6 PRO A 97 -14.01 -40.38 REMARK 500 6 ILE A 109 0.77 -59.14 REMARK 500 6 GLU A 119 148.76 58.94 REMARK 500 7 TRP A 44 22.49 -71.78 REMARK 500 7 VAL A 75 92.97 57.42 REMARK 500 7 GLU A 94 43.56 -72.34 REMARK 500 7 ASN A 96 158.82 -49.21 REMARK 500 7 ILE A 109 -15.85 -47.23 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18282 RELATED DB: BMRB DBREF 2LPY A 2 118 UNP P07567 GAG_MPMV 2 118 SEQADV 2LPY GLU A 119 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 120 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 121 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 122 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 123 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 124 UNP P07567 EXPRESSION TAG SEQADV 2LPY HIS A 125 UNP P07567 EXPRESSION TAG SEQRES 1 A 124 GLY GLN GLU LEU SER GLN HIS GLU ARG TYR VAL GLU GLN SEQRES 2 A 124 LEU LYS GLN ALA LEU LYS THR ARG GLY VAL LYS VAL LYS SEQRES 3 A 124 TYR ALA ASP LEU LEU LYS PHE PHE ASP PHE VAL LYS ASP SEQRES 4 A 124 THR CYS PRO TRP PHE PRO GLN GLU GLY THR ILE ASP ILE SEQRES 5 A 124 LYS ARG TRP ARG ARG VAL GLY ASP CYS PHE GLN ASP TYR SEQRES 6 A 124 TYR ASN THR PHE GLY PRO GLU LYS VAL PRO VAL THR ALA SEQRES 7 A 124 PHE SER TYR TRP ASN LEU ILE LYS GLU LEU ILE ASP LYS SEQRES 8 A 124 LYS GLU VAL ASN PRO GLN VAL MET ALA ALA VAL ALA GLN SEQRES 9 A 124 THR GLU GLU ILE LEU LYS SER ASN SER GLN THR ASP LEU SEQRES 10 A 124 GLU HIS HIS HIS HIS HIS HIS HET MYR A 201 42 HETNAM MYR MYRISTIC ACID FORMUL 2 MYR C14 H28 O2 HELIX 1 1 GLU A 4 THR A 21 1 18 HELIX 2 2 LYS A 27 CYS A 42 1 16 HELIX 3 3 ILE A 53 THR A 69 1 17 HELIX 4 4 VAL A 77 LYS A 92 1 16 HELIX 5 5 PRO A 97 ALA A 102 1 6 HELIX 6 6 ALA A 102 GLU A 107 1 6 LINK N GLY A 2 C1 MYR A 201 1555 1555 1.33 SITE 1 AC1 8 GLY A 2 GLN A 3 GLU A 4 TYR A 11 SITE 2 AC1 8 GLU A 48 GLY A 49 ILE A 51 GLN A 98 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1