data_2LQ7 # _entry.id 2LQ7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LQ7 pdb_00002lq7 10.2210/pdb2lq7/pdb RCSB RCSB102695 ? ? BMRB 18297 ? ? WWPDB D_1000102695 ? ? # _pdbx_database_related.db_id 18297 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LQ7 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-02-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Elgin, E.S.' 1 'Peterson, F.C.' 2 'Volkman, B.F.' 3 # _citation.id primary _citation.title 'E2-binding surface on Uba3 beta-grasp domain undergoes a conformational transition.' _citation.journal_abbrev Proteins _citation.journal_volume 80 _citation.page_first 2482 _citation.page_last 2487 _citation.year 2012 _citation.journal_id_ASTM PSFGEY _citation.country US _citation.journal_id_ISSN 0887-3585 _citation.journal_id_CSD 0867 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22821745 _citation.pdbx_database_id_DOI 10.1002/prot.24148 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Elgin, E.S.' 1 ? primary 'Sokmen, N.' 2 ? primary 'Peterson, F.C.' 3 ? primary 'Volkman, B.F.' 4 ? primary 'Dag, C.' 5 ? primary 'Haas, A.L.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'NEDD8-activating enzyme E1 catalytic subunit' _entity.formula_weight 10658.067 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 6.3.2.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'Interaction with UBE2M core domain residues 368-463' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NEDD8-activating enzyme E1C, Ubiquitin-activating enzyme E1C, Ubiquitin-like modifier-activating enzyme 3, Ubiquitin-activating enzyme 3 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV ADVTTPQTVLFKLHFTS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV ADVTTPQTVLFKLHFTS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLN n 1 4 LEU n 1 5 PRO n 1 6 GLN n 1 7 ASN n 1 8 ILE n 1 9 GLN n 1 10 PHE n 1 11 SER n 1 12 PRO n 1 13 SER n 1 14 ALA n 1 15 LYS n 1 16 LEU n 1 17 GLN n 1 18 GLU n 1 19 VAL n 1 20 LEU n 1 21 ASP n 1 22 TYR n 1 23 LEU n 1 24 THR n 1 25 ASN n 1 26 SER n 1 27 ALA n 1 28 SER n 1 29 LEU n 1 30 GLN n 1 31 MET n 1 32 LYS n 1 33 SER n 1 34 PRO n 1 35 ALA n 1 36 ILE n 1 37 THR n 1 38 ALA n 1 39 THR n 1 40 LEU n 1 41 GLU n 1 42 GLY n 1 43 LYS n 1 44 ASN n 1 45 ARG n 1 46 THR n 1 47 LEU n 1 48 TYR n 1 49 LEU n 1 50 GLN n 1 51 SER n 1 52 VAL n 1 53 THR n 1 54 SER n 1 55 ILE n 1 56 GLU n 1 57 GLU n 1 58 ARG n 1 59 THR n 1 60 ARG n 1 61 PRO n 1 62 ASN n 1 63 LEU n 1 64 SER n 1 65 LYS n 1 66 THR n 1 67 LEU n 1 68 LYS n 1 69 GLU n 1 70 LEU n 1 71 GLY n 1 72 LEU n 1 73 VAL n 1 74 ASP n 1 75 GLY n 1 76 GLN n 1 77 GLU n 1 78 LEU n 1 79 ALA n 1 80 VAL n 1 81 ALA n 1 82 ASP n 1 83 VAL n 1 84 THR n 1 85 THR n 1 86 PRO n 1 87 GLN n 1 88 THR n 1 89 VAL n 1 90 LEU n 1 91 PHE n 1 92 LYS n 1 93 LEU n 1 94 HIS n 1 95 PHE n 1 96 THR n 1 97 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UBA3, UBE1C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'SG13009[pREP4]' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pQE30 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UBA3_HUMAN _struct_ref.pdbx_db_accession Q8TBC4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD VTTPQTVLFKLHFTS ; _struct_ref.pdbx_align_begin 369 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LQ7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TBC4 _struct_ref_seq.db_align_beg 369 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 463 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 348 _struct_ref_seq.pdbx_auth_seq_align_end 442 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LQ7 GLY A 1 ? UNP Q8TBC4 ? ? 'expression tag' 346 1 1 2LQ7 SER A 2 ? UNP Q8TBC4 ? ? 'expression tag' 347 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY aliphatic' 1 3 1 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 127 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.4 mM [U-100% 13C; U-100% 15N] Uba3, 20 mM sodium phosphate, 100 mM sodium chloride, 0.02 % sodium azide, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LQ7 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LQ7 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LQ7 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 1 'Guntert, Mumenthaler and Wuthrich' refinement CYANA ? 2 'Bartels et al.' 'chemical shift assignment' XEASY ? 3 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 4 'Bruker Biospin' collection TopSpin ? 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LQ7 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LQ7 _struct.title 'E2 binding surface on Uba3 beta-grasp domain undergoes a conformational transition' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LQ7 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E1 enzyme, beta grasp domain, LIGASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 15 ? THR A 24 ? LYS A 360 THR A 369 1 ? 10 HELX_P HELX_P2 2 ARG A 60 ? LYS A 65 ? ARG A 405 LYS A 410 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 6 ? PHE A 10 ? GLN A 351 PHE A 355 A 2 THR A 88 ? PHE A 95 ? THR A 433 PHE A 440 A 3 GLN A 76 ? ALA A 81 ? GLN A 421 ALA A 426 A 4 ALA A 35 ? LEU A 40 ? ALA A 380 LEU A 385 A 5 LYS A 43 ? THR A 46 ? LYS A 388 THR A 391 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 6 ? N GLN A 351 O LEU A 90 ? O LEU A 435 A 2 3 O PHE A 91 ? O PHE A 436 N LEU A 78 ? N LEU A 423 A 3 4 O ALA A 79 ? O ALA A 424 N THR A 37 ? N THR A 382 A 4 5 N ALA A 38 ? N ALA A 383 O ARG A 45 ? O ARG A 390 # _atom_sites.entry_id 2LQ7 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 346 346 GLY GLY A . n A 1 2 SER 2 347 347 SER SER A . n A 1 3 GLN 3 348 348 GLN GLN A . n A 1 4 LEU 4 349 349 LEU LEU A . n A 1 5 PRO 5 350 350 PRO PRO A . n A 1 6 GLN 6 351 351 GLN GLN A . n A 1 7 ASN 7 352 352 ASN ASN A . n A 1 8 ILE 8 353 353 ILE ILE A . n A 1 9 GLN 9 354 354 GLN GLN A . n A 1 10 PHE 10 355 355 PHE PHE A . n A 1 11 SER 11 356 356 SER SER A . n A 1 12 PRO 12 357 357 PRO PRO A . n A 1 13 SER 13 358 358 SER SER A . n A 1 14 ALA 14 359 359 ALA ALA A . n A 1 15 LYS 15 360 360 LYS LYS A . n A 1 16 LEU 16 361 361 LEU LEU A . n A 1 17 GLN 17 362 362 GLN GLN A . n A 1 18 GLU 18 363 363 GLU GLU A . n A 1 19 VAL 19 364 364 VAL VAL A . n A 1 20 LEU 20 365 365 LEU LEU A . n A 1 21 ASP 21 366 366 ASP ASP A . n A 1 22 TYR 22 367 367 TYR TYR A . n A 1 23 LEU 23 368 368 LEU LEU A . n A 1 24 THR 24 369 369 THR THR A . n A 1 25 ASN 25 370 370 ASN ASN A . n A 1 26 SER 26 371 371 SER SER A . n A 1 27 ALA 27 372 372 ALA ALA A . n A 1 28 SER 28 373 373 SER SER A . n A 1 29 LEU 29 374 374 LEU LEU A . n A 1 30 GLN 30 375 375 GLN GLN A . n A 1 31 MET 31 376 376 MET MET A . n A 1 32 LYS 32 377 377 LYS LYS A . n A 1 33 SER 33 378 378 SER SER A . n A 1 34 PRO 34 379 379 PRO PRO A . n A 1 35 ALA 35 380 380 ALA ALA A . n A 1 36 ILE 36 381 381 ILE ILE A . n A 1 37 THR 37 382 382 THR THR A . n A 1 38 ALA 38 383 383 ALA ALA A . n A 1 39 THR 39 384 384 THR THR A . n A 1 40 LEU 40 385 385 LEU LEU A . n A 1 41 GLU 41 386 386 GLU GLU A . n A 1 42 GLY 42 387 387 GLY GLY A . n A 1 43 LYS 43 388 388 LYS LYS A . n A 1 44 ASN 44 389 389 ASN ASN A . n A 1 45 ARG 45 390 390 ARG ARG A . n A 1 46 THR 46 391 391 THR THR A . n A 1 47 LEU 47 392 392 LEU LEU A . n A 1 48 TYR 48 393 393 TYR TYR A . n A 1 49 LEU 49 394 394 LEU LEU A . n A 1 50 GLN 50 395 395 GLN GLN A . n A 1 51 SER 51 396 396 SER SER A . n A 1 52 VAL 52 397 397 VAL VAL A . n A 1 53 THR 53 398 398 THR THR A . n A 1 54 SER 54 399 399 SER SER A . n A 1 55 ILE 55 400 400 ILE ILE A . n A 1 56 GLU 56 401 401 GLU GLU A . n A 1 57 GLU 57 402 402 GLU GLU A . n A 1 58 ARG 58 403 403 ARG ARG A . n A 1 59 THR 59 404 404 THR THR A . n A 1 60 ARG 60 405 405 ARG ARG A . n A 1 61 PRO 61 406 406 PRO PRO A . n A 1 62 ASN 62 407 407 ASN ASN A . n A 1 63 LEU 63 408 408 LEU LEU A . n A 1 64 SER 64 409 409 SER SER A . n A 1 65 LYS 65 410 410 LYS LYS A . n A 1 66 THR 66 411 411 THR THR A . n A 1 67 LEU 67 412 412 LEU LEU A . n A 1 68 LYS 68 413 413 LYS LYS A . n A 1 69 GLU 69 414 414 GLU GLU A . n A 1 70 LEU 70 415 415 LEU LEU A . n A 1 71 GLY 71 416 416 GLY GLY A . n A 1 72 LEU 72 417 417 LEU LEU A . n A 1 73 VAL 73 418 418 VAL VAL A . n A 1 74 ASP 74 419 419 ASP ASP A . n A 1 75 GLY 75 420 420 GLY GLY A . n A 1 76 GLN 76 421 421 GLN GLN A . n A 1 77 GLU 77 422 422 GLU GLU A . n A 1 78 LEU 78 423 423 LEU LEU A . n A 1 79 ALA 79 424 424 ALA ALA A . n A 1 80 VAL 80 425 425 VAL VAL A . n A 1 81 ALA 81 426 426 ALA ALA A . n A 1 82 ASP 82 427 427 ASP ASP A . n A 1 83 VAL 83 428 428 VAL VAL A . n A 1 84 THR 84 429 429 THR THR A . n A 1 85 THR 85 430 430 THR THR A . n A 1 86 PRO 86 431 431 PRO PRO A . n A 1 87 GLN 87 432 432 GLN GLN A . n A 1 88 THR 88 433 433 THR THR A . n A 1 89 VAL 89 434 434 VAL VAL A . n A 1 90 LEU 90 435 435 LEU LEU A . n A 1 91 PHE 91 436 436 PHE PHE A . n A 1 92 LYS 92 437 437 LYS LYS A . n A 1 93 LEU 93 438 438 LEU LEU A . n A 1 94 HIS 94 439 439 HIS HIS A . n A 1 95 PHE 95 440 440 PHE PHE A . n A 1 96 THR 96 441 441 THR THR A . n A 1 97 SER 97 442 442 SER SER A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-07-25 2 'Structure model' 1 1 2013-08-28 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' pdbx_nmr_spectrometer 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_pdbx_nmr_spectrometer.model' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id Uba3-1 0.4 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium phosphate-2' 20 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 'sodium azide-4' 0.02 ? % ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LQ7 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1214 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 179 _pdbx_nmr_constraints.NOE_long_range_total_count 411 _pdbx_nmr_constraints.NOE_medium_range_total_count 233 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 391 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 76 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 80 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HG1 A THR 411 ? ? OE1 A GLU 414 ? ? 1.60 2 17 OD1 A ASP 427 ? ? HG1 A THR 429 ? ? 1.58 3 19 HZ3 A LYS 413 ? ? OE1 A GLU 414 ? ? 1.56 4 20 HG1 A THR 411 ? ? OE1 A GLU 414 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 369 ? ? -117.77 -70.51 2 1 GLU A 401 ? ? 63.30 -86.45 3 1 GLU A 402 ? ? -143.33 -85.56 4 1 ARG A 403 ? ? 64.96 99.80 5 1 PRO A 431 ? ? -83.93 32.99 6 2 THR A 369 ? ? -119.22 -71.13 7 2 LEU A 394 ? ? 67.70 93.32 8 2 VAL A 397 ? ? 70.60 119.87 9 2 THR A 398 ? ? -55.45 106.38 10 2 SER A 399 ? ? -141.78 -35.38 11 2 ILE A 400 ? ? -176.87 -51.26 12 3 THR A 369 ? ? -117.63 -71.33 13 3 PRO A 379 ? ? -49.80 151.09 14 3 ILE A 400 ? ? -174.38 140.23 15 3 GLU A 402 ? ? -172.08 -50.32 16 3 ARG A 405 ? ? -173.95 65.10 17 4 THR A 369 ? ? -118.76 -70.88 18 4 GLU A 402 ? ? 69.85 162.95 19 5 THR A 369 ? ? -117.75 -70.76 20 5 LEU A 394 ? ? -41.18 96.30 21 5 GLU A 402 ? ? 61.08 -73.45 22 5 THR A 404 ? ? 49.27 -88.70 23 6 THR A 369 ? ? -119.30 -73.80 24 6 LEU A 394 ? ? 69.53 81.87 25 6 SER A 396 ? ? -106.31 -166.99 26 6 SER A 399 ? ? 75.40 -52.38 27 6 ARG A 405 ? ? 54.49 78.56 28 7 THR A 369 ? ? -118.15 -71.57 29 7 SER A 399 ? ? -149.18 -63.21 30 7 ILE A 400 ? ? -179.09 131.64 31 7 ARG A 403 ? ? -137.27 -76.15 32 8 LEU A 368 ? ? -57.00 -71.55 33 8 THR A 369 ? ? -125.74 -75.52 34 8 SER A 396 ? ? -140.97 12.50 35 8 VAL A 397 ? ? 58.01 77.25 36 8 ILE A 400 ? ? 74.23 89.37 37 9 THR A 369 ? ? -118.91 -71.21 38 9 THR A 398 ? ? 69.55 91.22 39 9 THR A 404 ? ? -109.57 -64.40 40 10 THR A 369 ? ? -118.05 -71.95 41 10 PRO A 379 ? ? -48.48 157.21 42 10 LEU A 394 ? ? 68.56 -84.43 43 10 GLN A 395 ? ? 175.43 133.14 44 10 THR A 398 ? ? 60.53 97.07 45 11 THR A 369 ? ? -118.80 -72.04 46 11 TYR A 393 ? ? -140.47 -54.45 47 11 GLN A 395 ? ? -169.04 -36.52 48 11 SER A 399 ? ? 70.99 -67.73 49 11 THR A 404 ? ? 70.75 -85.64 50 11 PRO A 431 ? ? -85.50 32.25 51 12 THR A 369 ? ? -118.77 -71.66 52 12 THR A 398 ? ? 56.62 84.51 53 12 ARG A 405 ? ? 56.36 72.56 54 13 LEU A 368 ? ? -62.47 -70.14 55 13 THR A 369 ? ? -124.42 -76.02 56 13 SER A 396 ? ? -77.53 40.06 57 13 SER A 399 ? ? -163.90 17.23 58 13 GLU A 401 ? ? 70.30 -75.92 59 13 ARG A 403 ? ? -89.98 -93.89 60 13 THR A 404 ? ? 61.39 -86.76 61 13 ARG A 405 ? ? -179.03 44.09 62 14 THR A 369 ? ? -119.99 -72.24 63 14 GLU A 402 ? ? 72.78 175.88 64 14 ARG A 403 ? ? -67.86 -76.18 65 15 THR A 369 ? ? -118.33 -72.03 66 15 VAL A 397 ? ? 59.03 81.71 67 15 SER A 399 ? ? 62.88 -93.37 68 15 ARG A 403 ? ? -157.29 85.55 69 16 THR A 369 ? ? -121.46 -71.86 70 16 GLN A 395 ? ? 66.57 167.77 71 16 SER A 399 ? ? 71.36 158.85 72 16 GLU A 401 ? ? 74.89 129.69 73 16 GLU A 402 ? ? 77.71 154.35 74 16 THR A 404 ? ? 68.14 -72.60 75 17 TYR A 393 ? ? -105.28 -94.51 76 17 GLN A 395 ? ? -125.78 -63.08 77 17 SER A 396 ? ? -170.50 106.07 78 17 ARG A 405 ? ? 45.75 77.68 79 18 THR A 369 ? ? -118.93 -72.34 80 18 SER A 396 ? ? -136.49 -58.71 81 18 ARG A 405 ? ? -154.87 37.01 82 19 THR A 369 ? ? -123.62 -74.40 83 19 ILE A 400 ? ? -91.11 -67.93 84 19 GLU A 401 ? ? -167.66 -74.94 85 19 ARG A 405 ? ? -155.18 77.10 86 19 PRO A 431 ? ? -79.89 21.65 87 20 THR A 369 ? ? -121.82 -74.79 88 20 SER A 399 ? ? -175.45 -179.51 89 20 THR A 404 ? ? -111.85 -72.66 #