HEADER TRANSFERASE 06-APR-12 2LRL TITLE SOLUTION STRUCTURES OF THE IIA(CHITOBIOSE)-HPR COMPLEX OF THE N,N'- TITLE 2 DIACETYLCHITOBIOSE BRANCH OF THE ESCHERICHIA COLI PHOSPHOTRANSFERASE TITLE 3 SYSTEM COMPND MOL_ID: 1; COMPND 2 MOLECULE: N,N'-DIACETYLCHITOBIOSE-SPECIFIC PHOSPHOTRANSFERASE ENZYME COMPND 3 IIA COMPONENT; COMPND 4 CHAIN: A, B, C; COMPND 5 FRAGMENT: PTS EIIA TYPE-3 RESIDUES 14-116; COMPND 6 SYNONYM: EIIA-CHB, EIII-CHB, PTS SYSTEM N,N'-DIACETYLCHITOBIOSE- COMPND 7 SPECIFIC EIIA COMPONENT; COMPND 8 EC: 2.7.1.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PHOSPHOCARRIER PROTEIN HPR; COMPND 13 CHAIN: D; COMPND 14 SYNONYM: HISTIDINE-CONTAINING PROTEIN; COMPND 15 EC: 2.7.11.-; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: CHBA, CELC, B1736, JW1725; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 83333; SOURCE 12 STRAIN: K12; SOURCE 13 GENE: PTSH, HPR, B2415, JW2408; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET11 KEYWDS PROTEIN-PROTEIN COMPLEX, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.JUNG,M.CAI,M.CLORE REVDAT 4 01-MAY-24 2LRL 1 REMARK SEQADV REVDAT 3 25-JUL-12 2LRL 1 JRNL REVDAT 2 06-JUN-12 2LRL 1 JRNL REVDAT 1 16-MAY-12 2LRL 0 JRNL AUTH Y.S.JUNG,M.CAI,G.M.CLORE JRNL TITL SOLUTION STRUCTURE OF THE IIACHITOBIOSE-HPR COMPLEX OF THE JRNL TITL 2 N,N'-DIACETYLCHITOBIOSE BRANCH OF THE ESCHERICHIA COLI JRNL TITL 3 PHOSPHOTRANSFERASE SYSTEM. JRNL REF J.BIOL.CHEM. V. 287 23819 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593574 JRNL DOI 10.1074/JBC.M112.371492 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CONJOINED RIGID BODY/TORSION REMARK 3 ANGLE SIMULATED ANNEALING REMARK 4 REMARK 4 2LRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102745. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 1.0 MM D2O, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HN(COCA)CB; 3D HNCA; C13-C12 REMARK 210 EDITED/FILTED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 27 HE21 GLN A 31 1.32 REMARK 500 HZ3 LYS B 27 HE21 GLN B 31 1.33 REMARK 500 HZ3 LYS C 27 HE21 GLN C 31 1.33 REMARK 500 HG SER D 343 H LYS D 345 1.33 REMARK 500 O ILE D 308 H GLY D 358 1.58 REMARK 500 HZ2 LYS A 69 OE1 GLU B 5 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 -36.87 -38.39 REMARK 500 1 ASP A 62 -121.05 -158.25 REMARK 500 1 LEU B 4 -36.74 -38.56 REMARK 500 1 ASP B 33 78.98 -100.01 REMARK 500 1 ASP B 62 -121.62 -158.41 REMARK 500 1 LEU C 4 -36.90 -38.52 REMARK 500 1 ASP C 33 79.27 -100.17 REMARK 500 1 ASP C 62 -121.66 -158.48 REMARK 500 1 THR D 316 -69.99 -22.98 REMARK 500 2 LEU A 4 -31.45 -37.82 REMARK 500 2 ALA A 63 87.91 -68.77 REMARK 500 2 MET A 68 -88.64 -46.87 REMARK 500 2 LYS A 69 -127.82 -123.83 REMARK 500 2 VAL A 70 -143.71 -92.79 REMARK 500 2 LEU B 4 -31.34 -37.88 REMARK 500 2 ALA B 63 88.09 -68.69 REMARK 500 2 MET B 68 -88.95 -47.16 REMARK 500 2 LYS B 69 -127.69 -123.87 REMARK 500 2 VAL B 70 -144.54 -91.06 REMARK 500 2 LEU C 4 -31.67 -37.68 REMARK 500 2 ALA C 63 88.09 -68.51 REMARK 500 2 MET C 68 -89.07 -47.29 REMARK 500 2 LYS C 69 -127.90 -123.97 REMARK 500 2 VAL C 70 -144.97 -90.86 REMARK 500 2 THR D 316 -67.67 -24.78 REMARK 500 3 LEU A 4 -32.15 -37.11 REMARK 500 3 MET A 68 -93.61 -94.90 REMARK 500 3 LYS A 102 -72.40 58.81 REMARK 500 3 LEU B 4 -32.24 -37.21 REMARK 500 3 MET B 68 -93.80 -95.01 REMARK 500 3 LYS B 102 -72.36 58.61 REMARK 500 3 LEU C 4 -32.19 -37.41 REMARK 500 3 MET C 68 -93.29 -95.55 REMARK 500 3 LYS C 102 -72.46 58.83 REMARK 500 3 THR D 316 -62.78 -25.68 REMARK 500 4 GLU A 3 -78.66 -58.57 REMARK 500 4 LEU A 4 -37.31 -38.38 REMARK 500 4 MET A 68 -73.81 -87.43 REMARK 500 4 LYS A 69 -112.98 -95.08 REMARK 500 4 VAL A 70 -143.86 -93.34 REMARK 500 4 GLU B 3 -78.52 -58.62 REMARK 500 4 LEU B 4 -37.35 -38.58 REMARK 500 4 MET B 68 -73.74 -88.51 REMARK 500 4 LYS B 69 -112.69 -95.30 REMARK 500 4 VAL B 70 -144.77 -91.72 REMARK 500 4 GLU C 3 -78.47 -59.31 REMARK 500 4 LEU C 4 -37.36 -38.61 REMARK 500 4 MET C 68 -73.44 -88.30 REMARK 500 4 LYS C 69 -113.01 -95.59 REMARK 500 4 VAL C 70 -145.15 -91.30 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG D 317 0.08 SIDE CHAIN REMARK 500 2 ARG D 317 0.07 SIDE CHAIN REMARK 500 3 ARG D 317 0.08 SIDE CHAIN REMARK 500 4 ARG D 317 0.08 SIDE CHAIN REMARK 500 5 ARG D 317 0.08 SIDE CHAIN REMARK 500 6 ARG D 317 0.07 SIDE CHAIN REMARK 500 7 ARG D 317 0.08 SIDE CHAIN REMARK 500 8 ARG D 317 0.07 SIDE CHAIN REMARK 500 9 ARG D 317 0.08 SIDE CHAIN REMARK 500 10 ARG D 317 0.07 SIDE CHAIN REMARK 500 11 ARG D 317 0.07 SIDE CHAIN REMARK 500 12 ARG D 317 0.08 SIDE CHAIN REMARK 500 13 ARG D 317 0.07 SIDE CHAIN REMARK 500 14 ARG D 317 0.07 SIDE CHAIN REMARK 500 15 ARG D 317 0.08 SIDE CHAIN REMARK 500 16 ARG D 317 0.08 SIDE CHAIN REMARK 500 17 ARG D 317 0.07 SIDE CHAIN REMARK 500 18 ARG D 317 0.07 SIDE CHAIN REMARK 500 19 ARG D 317 0.07 SIDE CHAIN REMARK 500 20 ARG D 317 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO3 D 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18379 RELATED DB: BMRB REMARK 900 RELATED ID: 2LRK RELATED DB: PDB DBREF 2LRL A 1 103 UNP P69791 PTQA_ECOLI 14 116 DBREF 2LRL B 1 103 UNP P69791 PTQA_ECOLI 14 116 DBREF 2LRL C 1 103 UNP P69791 PTQA_ECOLI 14 116 DBREF 2LRL D 301 385 UNP P0AA04 PTHP_ECOLI 1 85 SEQADV 2LRL LEU A 79 UNP P69791 ASP 92 ENGINEERED MUTATION SEQADV 2LRL LEU B 79 UNP P69791 ASP 92 ENGINEERED MUTATION SEQADV 2LRL LEU C 79 UNP P69791 ASP 92 ENGINEERED MUTATION SEQRES 1 A 103 ALA GLU GLU LEU GLU GLU VAL VAL MET GLY LEU ILE ILE SEQRES 2 A 103 ASN SER GLY GLN ALA ARG SER LEU ALA TYR ALA ALA LEU SEQRES 3 A 103 LYS GLN ALA LYS GLN GLY ASP PHE ALA ALA ALA LYS ALA SEQRES 4 A 103 MET MET ASP GLN SER ARG MET ALA LEU ASN GLU ALA HIS SEQRES 5 A 103 LEU VAL GLN THR LYS LEU ILE GLU GLY ASP ALA GLY GLU SEQRES 6 A 103 GLY LYS MET LYS VAL SER LEU VAL LEU VAL HIS ALA GLN SEQRES 7 A 103 LEU HIS LEU MET THR SER MET LEU ALA ARG GLU LEU ILE SEQRES 8 A 103 THR GLU LEU ILE GLU LEU HIS GLU LYS LEU LYS ALA SEQRES 1 B 103 ALA GLU GLU LEU GLU GLU VAL VAL MET GLY LEU ILE ILE SEQRES 2 B 103 ASN SER GLY GLN ALA ARG SER LEU ALA TYR ALA ALA LEU SEQRES 3 B 103 LYS GLN ALA LYS GLN GLY ASP PHE ALA ALA ALA LYS ALA SEQRES 4 B 103 MET MET ASP GLN SER ARG MET ALA LEU ASN GLU ALA HIS SEQRES 5 B 103 LEU VAL GLN THR LYS LEU ILE GLU GLY ASP ALA GLY GLU SEQRES 6 B 103 GLY LYS MET LYS VAL SER LEU VAL LEU VAL HIS ALA GLN SEQRES 7 B 103 LEU HIS LEU MET THR SER MET LEU ALA ARG GLU LEU ILE SEQRES 8 B 103 THR GLU LEU ILE GLU LEU HIS GLU LYS LEU LYS ALA SEQRES 1 C 103 ALA GLU GLU LEU GLU GLU VAL VAL MET GLY LEU ILE ILE SEQRES 2 C 103 ASN SER GLY GLN ALA ARG SER LEU ALA TYR ALA ALA LEU SEQRES 3 C 103 LYS GLN ALA LYS GLN GLY ASP PHE ALA ALA ALA LYS ALA SEQRES 4 C 103 MET MET ASP GLN SER ARG MET ALA LEU ASN GLU ALA HIS SEQRES 5 C 103 LEU VAL GLN THR LYS LEU ILE GLU GLY ASP ALA GLY GLU SEQRES 6 C 103 GLY LYS MET LYS VAL SER LEU VAL LEU VAL HIS ALA GLN SEQRES 7 C 103 LEU HIS LEU MET THR SER MET LEU ALA ARG GLU LEU ILE SEQRES 8 C 103 THR GLU LEU ILE GLU LEU HIS GLU LYS LEU LYS ALA SEQRES 1 D 85 MET PHE GLN GLN GLU VAL THR ILE THR ALA PRO ASN GLY SEQRES 2 D 85 LEU HIS THR ARG PRO ALA ALA GLN PHE VAL LYS GLU ALA SEQRES 3 D 85 LYS GLY PHE THR SER GLU ILE THR VAL THR SER ASN GLY SEQRES 4 D 85 LYS SER ALA SER ALA LYS SER LEU PHE LYS LEU GLN THR SEQRES 5 D 85 LEU GLY LEU THR GLN GLY THR VAL VAL THR ILE SER ALA SEQRES 6 D 85 GLU GLY GLU ASP GLU GLN LYS ALA VAL GLU HIS LEU VAL SEQRES 7 D 85 LYS LEU MET ALA GLU LEU GLU HET PO3 D 200 4 HETNAM PO3 PHOSPHITE ION FORMUL 5 PO3 O3 P 3- HELIX 1 1 GLU A 2 GLN A 31 1 30 HELIX 2 2 ASP A 33 GLY A 61 1 29 HELIX 3 3 SER A 71 LEU A 101 1 31 HELIX 4 4 GLU B 2 GLN B 31 1 30 HELIX 5 5 ASP B 33 GLY B 61 1 29 HELIX 6 6 SER B 71 LEU B 101 1 31 HELIX 7 7 GLU C 2 GLN C 31 1 30 HELIX 8 8 ASP C 33 GLY C 61 1 29 HELIX 9 9 SER C 71 LEU C 101 1 31 HELIX 10 10 HIS D 315 GLY D 328 1 14 HELIX 11 11 SER D 346 GLN D 351 1 6 HELIX 12 12 ASP D 369 LEU D 384 1 16 SHEET 1 A 4 PHE D 302 THR D 307 0 SHEET 2 A 4 VAL D 360 GLU D 366 -1 O VAL D 361 N VAL D 306 SHEET 3 A 4 GLU D 332 SER D 337 -1 N THR D 334 O SER D 364 SHEET 4 A 4 LYS D 340 SER D 343 -1 O ALA D 342 N VAL D 335 SITE 1 AC1 4 HIS A 76 HIS A 80 HIS D 315 THR D 316 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1