HEADER OXIDOREDUCTASE 13-APR-12 2LRT TITLE SOLUTION STRUCTURE OF THE UNCHARACTERIZED THIOREDOXIN-LIKE PROTEIN TITLE 2 BVU_1432 FROM BACTEROIDES VULGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 242-382; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1432; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, THIOREDOXIN-LIKE, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PSI-BIOLOGY, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, AUTHOR 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH,A.GIZZI, AUTHOR 3 B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE,B.MATIKAINEN,H.PATEL, AUTHOR 4 R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN,S.C.ALMO,NEW YORK STRUCTURAL AUTHOR 5 GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 3 15-MAY-24 2LRT 1 REMARK REVDAT 2 14-JUN-23 2LRT 1 REMARK SEQADV REVDAT 1 25-APR-12 2LRT 0 JRNL AUTH R.HARRIS,A.D.BANDARANAYAKE,R.BANU,J.B.BONANNO,D.A.CALARESE, JRNL AUTH 2 A.CELIKGIL,S.CHAMALA,M.K.CHAN,R.CHAPARRO,B.EVANS,S.GARFORTH, JRNL AUTH 3 A.GIZZI,B.HILLERICH,A.KAR,J.LAFLEUR,S.LIM,J.LOVE, JRNL AUTH 4 B.MATIKAINEN,H.PATEL,R.D.SEIDEL,B.SMITH,M.STEAD,M.E.GIRVIN, JRNL AUTH 5 S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF THE UNCHARACTERIZED THIOREDOXIN-LIKE JRNL TITL 2 PROTEIN BVU_1432 FROM BACTEROIDES VULGATUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2LRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000102753. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] REMARK 210 UNCHARACTERIZED THIOREDOXIN-LIKE REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 1 MM DTT, REMARK 210 1 MM EDTA, 90% H2O, 10% D2O; 1 REMARK 210 MM [U-13C; U-15N] REMARK 210 UNCHARACTERIZED THIOREDOXIN-LIKE REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 1 MM DTT, REMARK 210 1 MM EDTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C CT REMARK 210 -HSQC; AROMATIC 13C CT-HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN 2.1.5, VNMR 2.2D, TOPSPIN REMARK 210 2.1, MDDNMR 2.0, MDDGUI 1.0, REMARK 210 NMRPIPE 5.4 REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL 3DS WERE COLLECTED AS NUS EXPERIMENTS USING THE MDDNMR REMARK 210 OR MDDGUI APPROACH REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 LEU A 30 HD22 ASN A 124 1.34 REMARK 500 OD1 ASP A 41 HE2 HIS A 53 1.54 REMARK 500 HZ1 LYS A 36 OE1 GLU A 70 1.56 REMARK 500 OE1 GLU A 80 HZ1 LYS A 84 1.56 REMARK 500 OD1 ASP A 79 HD1 HIS A 81 1.57 REMARK 500 HZ1 LYS A 141 OE2 GLU A 145 1.58 REMARK 500 HZ1 LYS A 11 OE2 GLU A 12 1.59 REMARK 500 OE1 GLU A 138 HZ3 LYS A 141 1.59 REMARK 500 H2 MET A 1 OD2 ASP A 17 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 8 -40.16 173.31 REMARK 500 1 ILE A 10 -90.90 63.00 REMARK 500 1 ASN A 46 -39.07 177.45 REMARK 500 1 THR A 112 -53.72 71.77 REMARK 500 1 ASN A 113 -80.04 -67.24 REMARK 500 1 LEU A 114 143.19 67.41 REMARK 500 1 ALA A 128 173.04 178.95 REMARK 500 1 ASP A 135 41.40 -143.43 REMARK 500 1 HIS A 150 -164.90 -175.98 REMARK 500 2 SER A 2 -67.42 -151.96 REMARK 500 2 LEU A 3 68.06 -153.46 REMARK 500 2 PRO A 6 -131.91 -76.86 REMARK 500 2 LYS A 9 125.09 175.61 REMARK 500 2 ILE A 10 103.99 -49.99 REMARK 500 2 LYS A 11 4.70 153.84 REMARK 500 2 ILE A 15 -159.83 42.50 REMARK 500 2 ASN A 46 -50.03 177.14 REMARK 500 2 SER A 66 -35.68 71.61 REMARK 500 2 ASP A 77 -77.67 -73.41 REMARK 500 2 ALA A 101 -16.11 77.81 REMARK 500 2 LEU A 126 107.66 -59.56 REMARK 500 2 ASP A 135 117.53 69.22 REMARK 500 2 HIS A 149 145.21 179.35 REMARK 500 2 HIS A 150 111.70 67.47 REMARK 500 3 LYS A 9 -154.72 -125.62 REMARK 500 3 ILE A 10 -77.43 63.78 REMARK 500 3 LYS A 11 -14.29 -158.45 REMARK 500 3 ASP A 22 -177.00 -69.06 REMARK 500 3 LYS A 34 101.74 -57.26 REMARK 500 3 TYR A 45 78.44 -105.98 REMARK 500 3 ASN A 46 16.82 -163.15 REMARK 500 3 SER A 66 -38.43 71.50 REMARK 500 3 ASP A 79 109.36 -162.89 REMARK 500 3 TRP A 92 -169.28 -102.16 REMARK 500 3 ASN A 110 29.03 48.13 REMARK 500 3 HIS A 150 99.86 -68.16 REMARK 500 4 PRO A 6 -164.84 -75.77 REMARK 500 4 LYS A 11 71.91 63.06 REMARK 500 4 SER A 14 -53.15 68.14 REMARK 500 4 ASN A 46 -32.33 172.95 REMARK 500 4 ARG A 122 29.68 -73.88 REMARK 500 4 ASN A 124 62.78 69.28 REMARK 500 4 ASP A 135 116.48 -173.05 REMARK 500 4 HIS A 150 95.84 -174.70 REMARK 500 5 ILE A 5 88.08 62.81 REMARK 500 5 LYS A 9 -75.50 68.63 REMARK 500 5 ILE A 10 30.05 -148.94 REMARK 500 5 ALA A 13 -71.35 68.23 REMARK 500 5 SER A 14 -15.93 70.23 REMARK 500 5 ASN A 46 -37.81 177.69 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-011327 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 18394 RELATED DB: BMRB DBREF 2LRT A 4 144 UNP A6L0A6 A6L0A6_BACV8 242 382 SEQADV 2LRT MET A 1 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT SER A 2 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT LEU A 3 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT GLU A 145 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT GLY A 146 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 147 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 148 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 149 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 150 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 151 UNP A6L0A6 EXPRESSION TAG SEQADV 2LRT HIS A 152 UNP A6L0A6 EXPRESSION TAG SEQRES 1 A 152 MET SER LEU GLU ILE PRO GLU ASP LYS ILE LYS GLU ALA SEQRES 2 A 152 SER ILE ILE ASP ILE GLN LEU LYS ASP LEU LYS GLY ASN SEQRES 3 A 152 THR ARG SER LEU THR ASP LEU LYS GLY LYS VAL VAL LEU SEQRES 4 A 152 ILE ASP PHE THR VAL TYR ASN ASN ALA MET SER ALA ALA SEQRES 5 A 152 HIS ASN LEU ALA LEU ARG GLU LEU TYR ASN LYS TYR ALA SEQRES 6 A 152 SER GLN GLY PHE GLU ILE TYR GLN ILE SER LEU ASP GLY SEQRES 7 A 152 ASP GLU HIS PHE TRP LYS THR SER ALA ASP ASN LEU PRO SEQRES 8 A 152 TRP VAL CYS VAL ARG ASP ALA ASN GLY ALA TYR SER SER SEQRES 9 A 152 TYR ILE SER LEU TYR ASN VAL THR ASN LEU PRO SER VAL SEQRES 10 A 152 PHE LEU VAL ASN ARG ASN ASN GLU LEU SER ALA ARG GLY SEQRES 11 A 152 GLU ASN ILE LYS ASP LEU ASP GLU ALA ILE LYS LYS LEU SEQRES 12 A 152 LEU GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 32 LYS A 36 5 5 HELIX 2 2 ASN A 47 ALA A 65 1 19 HELIX 3 3 ASP A 79 ASP A 88 1 10 HELIX 4 4 ASN A 99 TYR A 102 5 4 HELIX 5 5 SER A 103 ASN A 110 1 8 HELIX 6 6 ASP A 135 GLU A 145 1 11 HELIX 7 7 GLY A 146 HIS A 148 5 3 SHEET 1 A 2 LEU A 20 LYS A 21 0 SHEET 2 A 2 THR A 27 ARG A 28 -1 O ARG A 28 N LEU A 20 SHEET 1 B 5 VAL A 93 ARG A 96 0 SHEET 2 B 5 PHE A 69 SER A 75 1 N GLN A 73 O VAL A 95 SHEET 3 B 5 VAL A 37 THR A 43 1 N ASP A 41 O ILE A 74 SHEET 4 B 5 SER A 116 ASN A 121 -1 O SER A 116 N PHE A 42 SHEET 5 B 5 GLU A 125 ARG A 129 -1 O ALA A 128 N LEU A 119 CISPEP 1 LEU A 114 PRO A 115 1 -0.11 CISPEP 2 LEU A 114 PRO A 115 2 2.64 CISPEP 3 LEU A 114 PRO A 115 3 0.71 CISPEP 4 LEU A 114 PRO A 115 4 1.40 CISPEP 5 LEU A 114 PRO A 115 5 0.84 CISPEP 6 LEU A 114 PRO A 115 6 0.01 CISPEP 7 LEU A 114 PRO A 115 7 0.31 CISPEP 8 LEU A 114 PRO A 115 8 1.51 CISPEP 9 LEU A 114 PRO A 115 9 1.79 CISPEP 10 LEU A 114 PRO A 115 10 0.86 CISPEP 11 LEU A 114 PRO A 115 11 -0.05 CISPEP 12 LEU A 114 PRO A 115 12 1.28 CISPEP 13 LEU A 114 PRO A 115 13 -0.83 CISPEP 14 LEU A 114 PRO A 115 14 0.97 CISPEP 15 LEU A 114 PRO A 115 15 0.31 CISPEP 16 LEU A 114 PRO A 115 16 0.70 CISPEP 17 LEU A 114 PRO A 115 17 0.15 CISPEP 18 LEU A 114 PRO A 115 18 0.46 CISPEP 19 LEU A 114 PRO A 115 19 1.21 CISPEP 20 LEU A 114 PRO A 115 20 1.07 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1