data_2LSF # _entry.id 2LSF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LSF pdb_00002lsf 10.2210/pdb2lsf/pdb RCSB RCSB102775 ? ? BMRB 18430 ? 10.13018/BMR18430 WWPDB D_1000102775 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-09-12 2 'Structure model' 1 1 2012-10-03 3 'Structure model' 1 2 2012-10-31 4 'Structure model' 1 3 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LSF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_id 18430 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zaliznyak, T.' 1 'de los Santos, C.' 2 'Lukin, M.' 3 # _citation.id primary _citation.title ;Structure and Stability of Duplex DNA Containing (5'S)-5',8-Cyclo-2'-deoxyadenosine: An Oxidatively Generated Lesion Repaired by NER. ; _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 25 _citation.page_first 2103 _citation.page_last 2111 _citation.year 2012 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22928555 _citation.pdbx_database_id_DOI 10.1021/tx300193k # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zaliznyak, T.' 1 ? primary 'Lukin, M.' 2 ? primary 'de Los Santos, C.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*(02I)P*CP*AP*TP*GP*C)-3') ; 3316.171 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*TP*GP*TP*GP*TP*AP*CP*G)-3') ; 3389.221 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DT)(DA)(DC)(02I)(DC)(DA)(DT)(DG)(DC)' CGTACXCATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DT)(DG)(DT)(DA)(DC)(DG)' GCATGTGTACG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 02I n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 02I 'DNA linking' . '(6S,7S,8S,10R)-4-amino-8-hydroxy-7,8,9,10-tetrahydro-6H-7,10-epoxyazepino[1,2-e]purin-6-yl dihydrogen phosphate' ? 'C10 H12 N5 O6 P' 329.206 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT B . n A 1 2 DG 2 2 2 DG GUA B . n A 1 3 DT 3 3 3 DT THY B . n A 1 4 DA 4 4 4 DA ADE B . n A 1 5 DC 5 5 5 DC CYT B . n A 1 6 02I 6 6 6 02I DAC B . n A 1 7 DC 7 7 7 DC CYT B . n A 1 8 DA 8 8 8 DA ADE B . n A 1 9 DT 9 9 9 DT THY B . n A 1 10 DG 10 10 10 DG GUA B . n A 1 11 DC 11 11 11 DC CYT B . n B 2 1 DG 1 1 1 DG GUA D . n B 2 2 DC 2 2 2 DC CYT D . n B 2 3 DA 3 3 3 DA ADE D . n B 2 4 DT 4 4 4 DT THY D . n B 2 5 DG 5 5 5 DG GUA D . n B 2 6 DT 6 6 6 DT THY D . n B 2 7 DG 7 7 7 DG GUA D . n B 2 8 DT 8 8 8 DT THY D . n B 2 9 DA 9 9 9 DA ADE D . n B 2 10 DC 10 10 10 DC CYT D . n B 2 11 DG 11 11 11 DG GUA D . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LSF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LSF _struct.title ;Structure and Stability of Duplex DNA Containing (5'S) 5',8-Cyclo-2'-Deoxyadenosine: An Oxidative Lesion Repair by NER ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2LSF _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'NER, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2LSF 2LSF 1 ? ? ? 2 PDB 2LSF 2LSF 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LSF B 1 ? 11 ? 2LSF 1 ? 11 ? 1 11 2 2 2LSF D 1 ? 11 ? 2LSF 1 ? 11 ? 1 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 5 "O3'" ? ? ? 1_555 A 02I 6 P ? ? B DC 5 B 02I 6 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A 02I 6 "O3'" ? ? ? 1_555 A DC 7 P ? ? B 02I 6 B DC 7 1_555 ? ? ? ? ? ? ? 1.615 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 2 1 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 3 1 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 4 2 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 5 3 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.532 1.496 0.036 0.006 N 6 3 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 7 3 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 8 4 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 9 4 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 10 5 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.535 1.496 0.039 0.006 N 11 5 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 12 5 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 13 5 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.535 1.496 0.039 0.006 N 14 6 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 15 7 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.534 1.496 0.038 0.006 N 16 7 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 17 7 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 18 7 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 19 9 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 20 9 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 21 9 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 22 10 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 23 10 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 24 11 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 25 12 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.533 1.496 0.037 0.006 N 26 12 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 27 12 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 28 12 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.535 1.496 0.039 0.006 N 29 13 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.546 1.496 0.050 0.006 N 30 13 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 31 13 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 32 14 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 33 14 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.534 1.496 0.038 0.006 N 34 14 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 35 14 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 36 14 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 37 15 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 38 15 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.535 1.496 0.039 0.006 N 39 16 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 40 16 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 41 16 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 42 17 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 43 17 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 44 18 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.546 1.496 0.050 0.006 N 45 18 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 46 19 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.543 1.496 0.047 0.006 N 47 19 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 48 20 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 49 20 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 50 20 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.538 1.496 0.042 0.006 N 51 20 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 52 21 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 53 21 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 54 21 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 55 21 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 56 22 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.537 1.496 0.041 0.006 N 57 23 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 58 23 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 59 23 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 60 24 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.534 1.496 0.038 0.006 N 61 24 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 62 25 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 63 25 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 64 25 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 65 26 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.546 1.496 0.050 0.006 N 66 26 C5 D DT 6 ? ? C7 D DT 6 ? ? 1.533 1.496 0.037 0.006 N 67 26 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.48 108.30 3.18 0.30 N 2 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.01 108.30 3.71 0.30 N 3 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.64 108.30 3.34 0.30 N 4 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.83 108.30 4.53 0.30 N 5 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.08 108.30 2.78 0.30 N 6 1 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.28 108.30 1.98 0.30 N 7 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.80 108.30 3.50 0.30 N 8 2 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.79 108.30 3.49 0.30 N 9 2 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.61 108.30 3.31 0.30 N 10 2 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.70 108.30 4.40 0.30 N 11 2 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.28 108.30 1.98 0.30 N 12 2 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 112.19 108.30 3.89 0.30 N 13 2 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.66 108.30 2.36 0.30 N 14 2 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 110.55 108.30 2.25 0.30 N 15 2 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.14 108.30 1.84 0.30 N 16 2 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.48 108.30 4.18 0.30 N 17 3 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.71 108.30 2.41 0.30 N 18 3 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.95 108.30 3.65 0.30 N 19 3 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.83 108.30 3.53 0.30 N 20 3 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.12 108.30 4.82 0.30 N 21 3 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.84 108.30 2.54 0.30 N 22 3 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.66 108.30 4.36 0.30 N 23 3 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? "C2'" D DT 6 ? ? 101.07 105.90 -4.83 0.80 N 24 3 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.74 108.30 2.44 0.30 N 25 4 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.46 108.30 3.16 0.30 N 26 4 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.26 108.30 3.96 0.30 N 27 4 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.46 108.30 3.16 0.30 N 28 4 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.98 108.30 4.68 0.30 N 29 4 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.39 108.30 2.09 0.30 N 30 4 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.27 108.30 1.97 0.30 N 31 4 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.87 108.30 3.57 0.30 N 32 5 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.02 108.30 3.72 0.30 N 33 5 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.84 108.30 3.54 0.30 N 34 5 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.10 108.30 4.80 0.30 N 35 5 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.28 108.30 1.98 0.30 N 36 5 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.73 108.30 3.43 0.30 N 37 5 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.29 108.30 1.99 0.30 N 38 5 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.40 108.30 2.10 0.30 N 39 5 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.77 108.30 2.47 0.30 N 40 6 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.22 108.30 1.92 0.30 N 41 6 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.86 108.30 3.56 0.30 N 42 6 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.59 108.30 3.29 0.30 N 43 6 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.85 108.30 4.55 0.30 N 44 6 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.49 108.30 3.19 0.30 N 45 6 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DT 6 ? ? 128.65 119.70 8.95 1.20 Y 46 6 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.36 108.30 2.06 0.30 N 47 6 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.88 108.30 3.58 0.30 N 48 7 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.99 108.30 2.69 0.30 N 49 7 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.02 108.30 3.72 0.30 N 50 7 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.71 108.30 3.41 0.30 N 51 7 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.39 108.30 5.09 0.30 N 52 7 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.85 108.30 2.55 0.30 N 53 7 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.55 108.30 2.25 0.30 N 54 7 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.89 108.30 3.59 0.30 N 55 8 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.14 108.30 2.84 0.30 N 56 8 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.09 108.30 3.79 0.30 N 57 8 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.49 108.30 3.19 0.30 N 58 8 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.01 108.30 4.71 0.30 N 59 8 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.57 108.30 2.27 0.30 N 60 8 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.11 108.30 1.81 0.30 N 61 8 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.97 108.30 3.67 0.30 N 62 9 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.20 108.30 2.90 0.30 N 63 9 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.35 108.30 4.05 0.30 N 64 9 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.32 108.30 3.02 0.30 N 65 9 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.85 108.30 4.55 0.30 N 66 9 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.38 108.30 3.08 0.30 N 67 9 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.99 108.30 2.69 0.30 N 68 9 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.38 108.30 2.08 0.30 N 69 9 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.47 108.30 2.17 0.30 N 70 9 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.29 108.30 3.99 0.30 N 71 10 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.04 108.30 3.74 0.30 N 72 10 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.98 108.30 3.68 0.30 N 73 10 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.84 108.30 4.54 0.30 N 74 10 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.80 108.30 2.50 0.30 N 75 10 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.49 108.30 2.19 0.30 N 76 10 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.09 119.70 7.39 1.20 Y 77 10 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.22 108.30 1.92 0.30 N 78 10 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.04 108.30 3.74 0.30 N 79 11 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.86 108.30 2.56 0.30 N 80 11 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.19 108.30 3.89 0.30 N 81 11 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.68 108.30 3.38 0.30 N 82 11 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.89 108.30 4.59 0.30 N 83 11 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 122.58 118.90 3.68 0.60 N 84 11 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.66 108.30 3.36 0.30 N 85 11 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.17 108.30 1.87 0.30 N 86 11 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.33 108.30 2.03 0.30 N 87 11 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.09 108.30 3.79 0.30 N 88 12 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.20 108.30 3.90 0.30 N 89 12 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 112.16 108.30 3.86 0.30 N 90 12 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.21 108.30 4.91 0.30 N 91 12 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.13 108.30 1.83 0.30 N 92 12 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.47 108.30 3.17 0.30 N 93 12 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.45 108.30 2.15 0.30 N 94 12 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.32 108.30 4.02 0.30 N 95 12 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DT 6 ? ? 128.67 119.70 8.97 1.20 Y 96 12 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.53 108.30 3.23 0.30 N 97 13 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.74 108.30 2.44 0.30 N 98 13 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.12 108.30 3.82 0.30 N 99 13 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.97 108.30 3.67 0.30 N 100 13 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.96 108.30 4.66 0.30 N 101 13 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.46 108.30 2.16 0.30 N 102 13 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.28 108.30 1.98 0.30 N 103 13 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.27 108.30 1.97 0.30 N 104 13 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.41 108.30 3.11 0.30 N 105 14 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.97 108.30 2.67 0.30 N 106 14 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.93 108.30 3.63 0.30 N 107 14 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.73 108.30 3.43 0.30 N 108 14 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.85 108.30 4.55 0.30 N 109 14 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.74 108.30 2.44 0.30 N 110 14 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.29 119.70 7.59 1.20 Y 111 14 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.25 108.30 1.95 0.30 N 112 14 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.41 108.30 2.11 0.30 N 113 14 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.74 108.30 2.44 0.30 N 114 15 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.25 108.30 3.95 0.30 N 115 15 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.52 108.30 3.22 0.30 N 116 15 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.65 108.30 4.35 0.30 N 117 15 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.37 108.30 2.07 0.30 N 118 15 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.28 108.30 1.98 0.30 N 119 15 "O4'" D DT 6 ? ? "C1'" D DT 6 ? ? N1 D DT 6 ? ? 110.15 108.30 1.85 0.30 N 120 15 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.24 108.30 1.94 0.30 N 121 15 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.29 108.30 2.99 0.30 N 122 16 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.34 108.30 3.04 0.30 N 123 16 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.57 118.90 3.67 0.60 N 124 16 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.98 108.30 3.68 0.30 N 125 16 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.97 108.30 3.67 0.30 N 126 16 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.98 108.30 4.68 0.30 N 127 16 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.25 108.30 1.95 0.30 N 128 16 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.12 108.30 1.82 0.30 N 129 16 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.11 108.30 1.81 0.30 N 130 16 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.33 108.30 4.03 0.30 N 131 17 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.99 108.30 2.69 0.30 N 132 17 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.86 108.30 3.56 0.30 N 133 17 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.93 108.30 3.63 0.30 N 134 17 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.51 108.30 4.21 0.30 N 135 17 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.65 108.30 2.35 0.30 N 136 17 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 126.92 119.70 7.22 1.20 Y 137 17 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? "C2'" D DG 5 ? ? 100.78 105.90 -5.12 0.80 N 138 17 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.18 108.30 3.88 0.30 N 139 17 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.00 108.30 3.70 0.30 N 140 18 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.61 108.30 2.31 0.30 N 141 18 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.94 108.30 3.64 0.30 N 142 18 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.70 108.30 3.40 0.30 N 143 18 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.87 108.30 4.57 0.30 N 144 18 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.46 108.30 2.16 0.30 N 145 18 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.41 108.30 2.11 0.30 N 146 18 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DT 6 ? ? 127.97 119.70 8.27 1.20 Y 147 18 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.42 108.30 2.12 0.30 N 148 18 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.83 108.30 3.53 0.30 N 149 19 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.45 108.30 3.15 0.30 N 150 19 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.18 108.30 3.88 0.30 N 151 19 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.99 108.30 3.69 0.30 N 152 19 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.97 108.30 4.67 0.30 N 153 19 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 122.53 118.90 3.63 0.60 N 154 19 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.54 108.30 2.24 0.30 N 155 19 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.74 108.30 3.44 0.30 N 156 19 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.15 108.30 1.85 0.30 N 157 19 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.35 108.30 2.05 0.30 N 158 19 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.79 108.30 3.49 0.30 N 159 20 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.39 108.30 2.09 0.30 N 160 20 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.97 108.30 3.67 0.30 N 161 20 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.47 108.30 3.17 0.30 N 162 20 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.87 108.30 4.57 0.30 N 163 20 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.26 108.30 1.96 0.30 N 164 20 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.26 108.30 1.96 0.30 N 165 20 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.69 108.30 2.39 0.30 N 166 20 "C3'" D DT 6 ? ? "O3'" D DT 6 ? ? P D DG 7 ? ? 129.46 119.70 9.76 1.20 Y 167 20 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 111.46 108.30 3.16 0.30 N 168 20 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.33 108.30 4.03 0.30 N 169 21 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.93 108.30 2.63 0.30 N 170 21 "C3'" B DC 1 ? ? "O3'" B DC 1 ? ? P B DG 2 ? ? 126.98 119.70 7.28 1.20 Y 171 21 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.70 108.30 3.40 0.30 N 172 21 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.79 108.30 3.49 0.30 N 173 21 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.88 108.30 4.58 0.30 N 174 21 "C3'" D DT 6 ? ? "O3'" D DT 6 ? ? P D DG 7 ? ? 128.40 119.70 8.70 1.20 Y 175 21 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.28 108.30 1.98 0.30 N 176 21 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.82 108.30 3.52 0.30 N 177 22 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.65 108.30 2.35 0.30 N 178 22 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.33 108.30 4.03 0.30 N 179 22 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.92 108.30 3.62 0.30 N 180 22 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.78 108.30 4.48 0.30 N 181 22 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.45 108.30 2.15 0.30 N 182 22 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.46 108.30 2.16 0.30 N 183 22 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DT 6 ? ? 127.35 119.70 7.65 1.20 Y 184 22 "C3'" D DT 6 ? ? "O3'" D DT 6 ? ? P D DG 7 ? ? 129.15 119.70 9.45 1.20 Y 185 22 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 111.50 108.30 3.20 0.30 N 186 22 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.37 108.30 3.07 0.30 N 187 23 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.57 108.30 2.27 0.30 N 188 23 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.90 108.30 3.60 0.30 N 189 23 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 112.06 108.30 3.76 0.30 N 190 23 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.77 108.30 4.47 0.30 N 191 23 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.82 108.30 2.52 0.30 N 192 23 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 110.41 108.30 2.11 0.30 N 193 23 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.91 108.30 2.61 0.30 N 194 24 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 111.91 108.30 3.61 0.30 N 195 24 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.82 108.30 3.52 0.30 N 196 24 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.85 108.30 3.55 0.30 N 197 24 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.83 108.30 4.53 0.30 N 198 24 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.95 108.30 2.65 0.30 N 199 24 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.22 108.30 1.92 0.30 N 200 24 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.43 108.30 3.13 0.30 N 201 25 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.63 108.30 3.33 0.30 N 202 25 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.67 108.30 3.37 0.30 N 203 25 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 113.02 108.30 4.72 0.30 N 204 25 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.65 108.30 2.35 0.30 N 205 25 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.52 108.30 2.22 0.30 N 206 25 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.34 119.70 7.64 1.20 Y 207 25 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.29 108.30 1.99 0.30 N 208 25 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.14 108.30 2.84 0.30 N 209 26 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.46 108.30 2.16 0.30 N 210 26 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.99 108.30 3.69 0.30 N 211 26 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 111.60 108.30 3.30 0.30 N 212 26 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.85 108.30 4.55 0.30 N 213 26 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.57 108.30 3.27 0.30 N 214 26 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.17 108.30 1.87 0.30 N 215 26 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.33 108.30 2.03 0.30 N 216 26 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.41 108.30 2.11 0.30 N 217 26 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.40 108.30 3.10 0.30 N # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 26 _pdbx_nmr_ensemble.conformers_submitted_total_number 26 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LSF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LSF _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.7 mM 11 mer DNA duplex, 100% D2O' 1 '100% D2O' '0.7 mM 11 mer DNA duplex, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id '11 mer DNA duplex-1' 0.7 ? mM ? 1 '11 mer DNA duplex-2' 0.7 ? mM ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.7 ambient ? 298 K 2 ? 6.7 ambient ? 278 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-15N HSQC' 2 5 2 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2LSF _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMR ? 1 'Bruker Biospin' collection TopSpin ? 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 3 'Accelrys Software Inc.' processing Felix ? 4 Goddard 'peak picking' Sparky ? 5 Goddard 'chemical shift assignment' Sparky ? 6 Goddard 'data analysis' Sparky ? 7 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' 'X-PLOR NIH' ? 8 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 9 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' ? 10 'Tejero, Monleon, Celda, Powers and Montelione' 'geometry optimization' HYPER ? 11 'Tejero, Monleon, Celda, Powers and Montelione' 'data analysis' HYPER ? 12 'Accelrys Software Inc.' 'data analysis' 'Insight II' ? 13 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 02I P P N N 1 02I N1 N Y N 2 02I C2 C Y N 3 02I N3 N Y N 4 02I C4 C Y N 5 02I C5 C Y N 6 02I C6 C Y N 7 02I N6 N N N 8 02I N7 N Y N 9 02I C8 C Y N 10 02I N9 N Y N 11 02I "C1'" C N R 12 02I OP3 O N N 13 02I "C2'" C N N 14 02I OP2 O N N 15 02I "C3'" C N S 16 02I "O3'" O N N 17 02I "C4'" C N S 18 02I "O4'" O N N 19 02I "C5'" C N S 20 02I "O5'" O N N 21 02I H2 H N N 22 02I H1N6 H N N 23 02I H2N6 H N N 24 02I "H1'" H N N 25 02I "H12'" H N N 26 02I "H22'" H N N 27 02I "H3'" H N N 28 02I "H4'" H N N 29 02I "H5'" H N N 30 02I HOP3 H N N 31 02I HOP2 H N N 32 02I "HO3'" H N N 33 02I OP1 O N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 02I P "O5'" sing N N 1 02I P OP3 sing N N 2 02I N1 C6 sing Y N 3 02I C2 N1 doub Y N 4 02I N3 C2 sing Y N 5 02I N3 C4 doub Y N 6 02I C4 C5 sing Y N 7 02I C5 C6 doub Y N 8 02I C5 N7 sing Y N 9 02I C6 N6 sing N N 10 02I N6 H2N6 sing N N 11 02I C8 N7 doub Y N 12 02I C8 "C5'" sing N N 13 02I N9 C4 sing Y N 14 02I N9 C8 sing Y N 15 02I "C1'" N9 sing N N 16 02I "C1'" "C2'" sing N N 17 02I OP3 HOP3 sing N N 18 02I "C2'" "C3'" sing N N 19 02I "C2'" "H12'" sing N N 20 02I OP2 P sing N N 21 02I OP2 HOP2 sing N N 22 02I "C3'" "O3'" sing N N 23 02I "C3'" "H3'" sing N N 24 02I "O3'" "HO3'" sing N N 25 02I "C4'" "C3'" sing N N 26 02I "C4'" "C5'" sing N N 27 02I "O4'" "C1'" sing N N 28 02I "O4'" "C4'" sing N N 29 02I "C5'" "O5'" sing N N 30 02I H2 C2 sing N N 31 02I H1N6 N6 sing N N 32 02I "H1'" "C1'" sing N N 33 02I "H22'" "C2'" sing N N 34 02I "H4'" "C4'" sing N N 35 02I "H5'" "C5'" sing N N 36 02I P OP1 doub N N 37 DA OP3 P sing N N 38 DA OP3 HOP3 sing N N 39 DA P OP1 doub N N 40 DA P OP2 sing N N 41 DA P "O5'" sing N N 42 DA OP2 HOP2 sing N N 43 DA "O5'" "C5'" sing N N 44 DA "C5'" "C4'" sing N N 45 DA "C5'" "H5'" sing N N 46 DA "C5'" "H5''" sing N N 47 DA "C4'" "O4'" sing N N 48 DA "C4'" "C3'" sing N N 49 DA "C4'" "H4'" sing N N 50 DA "O4'" "C1'" sing N N 51 DA "C3'" "O3'" sing N N 52 DA "C3'" "C2'" sing N N 53 DA "C3'" "H3'" sing N N 54 DA "O3'" "HO3'" sing N N 55 DA "C2'" "C1'" sing N N 56 DA "C2'" "H2'" sing N N 57 DA "C2'" "H2''" sing N N 58 DA "C1'" N9 sing N N 59 DA "C1'" "H1'" sing N N 60 DA N9 C8 sing Y N 61 DA N9 C4 sing Y N 62 DA C8 N7 doub Y N 63 DA C8 H8 sing N N 64 DA N7 C5 sing Y N 65 DA C5 C6 sing Y N 66 DA C5 C4 doub Y N 67 DA C6 N6 sing N N 68 DA C6 N1 doub Y N 69 DA N6 H61 sing N N 70 DA N6 H62 sing N N 71 DA N1 C2 sing Y N 72 DA C2 N3 doub Y N 73 DA C2 H2 sing N N 74 DA N3 C4 sing Y N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LSF 'double helix' 2LSF 'b-form double helix' 2LSF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.725 -0.316 -0.014 -1.995 -0.222 -1.808 1 B_DC1:DG11_D B 1 ? D 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.677 -0.270 -0.170 -10.597 -7.712 -1.035 2 B_DG2:DC10_D B 2 ? D 10 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.159 -0.164 0.216 -8.268 -2.323 -1.419 3 B_DT3:DA9_D B 3 ? D 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 -0.100 -0.192 0.187 14.837 1.828 -2.941 4 B_DA4:DT8_D B 4 ? D 8 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.797 -0.291 -0.138 30.741 -13.671 -4.746 5 B_DC5:DG7_D B 5 ? D 7 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.706 -0.224 -0.275 8.520 -7.640 -3.105 6 B_DC7:DG5_D B 7 ? D 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.154 -0.192 0.185 -0.611 -15.729 -5.881 7 B_DA8:DT4_D B 8 ? D 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.239 -0.203 0.140 -0.580 -13.212 -1.521 8 B_DT9:DA3_D B 9 ? D 3 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.845 -0.361 -0.104 -5.722 -6.059 -0.895 9 B_DG10:DC2_D B 10 ? D 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.786 -0.316 -0.056 5.772 -3.449 -0.109 10 B_DC11:DG1_D B 11 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 -0.100 -2.424 3.630 1.203 1.341 21.007 -7.235 0.820 3.459 3.668 -3.293 21.083 1 BB_DC1DG2:DC10DG11_DD B 1 ? D 11 ? B 2 ? D 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.439 -0.946 3.356 -1.130 -1.348 36.138 -1.328 0.543 3.400 -2.171 1.820 36.179 2 BB_DG2DT3:DA9DC10_DD B 2 ? D 10 ? B 3 ? D 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 0.107 -0.794 2.804 -1.361 -0.905 28.030 -1.452 -0.496 2.820 -1.867 2.807 28.077 3 BB_DT3DA4:DT8DA9_DD B 3 ? D 9 ? B 4 ? D 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 0.176 0.164 2.933 3.815 -1.279 35.175 0.439 0.215 2.928 -2.108 -6.287 35.397 4 BB_DA4DC5:DG7DT8_DD B 4 ? D 8 ? B 5 ? D 7 ? 1 A DC 5 1_555 B DG 7 1_555 A DC 7 1_555 B DG 5 1_555 -0.485 1.068 6.769 -5.963 19.062 82.146 -0.160 0.063 6.866 14.319 4.479 84.118 5 BB_DC5DC7:DG5DG7_DD B 5 ? D 7 ? B 7 ? D 5 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.583 -1.257 3.803 -3.176 1.050 27.279 -2.946 0.318 3.795 2.215 6.703 27.479 6 BB_DC7DA8:DT4DG5_DD B 7 ? D 5 ? B 8 ? D 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 0.133 -0.889 3.226 0.236 0.324 31.053 -1.721 -0.204 3.218 0.606 -0.440 31.055 7 BB_DA8DT9:DA3DT4_DD B 8 ? D 4 ? B 9 ? D 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.396 -0.736 3.651 0.373 8.795 29.526 -3.254 -0.666 3.304 16.792 -0.712 30.782 8 BB_DT9DG10:DC2DA3_DD B 9 ? D 3 ? B 10 ? D 2 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.208 0.121 3.430 -0.524 -7.757 41.798 0.990 -0.342 3.354 -10.760 0.728 42.483 9 BB_DG10DC11:DG1DC2_DD B 10 ? D 2 ? B 11 ? D 1 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 400 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' # _atom_sites.entry_id 2LSF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_