HEADER PROTEIN BINDING 30-APR-12 2LSG TITLE SOLUTION STRUCTURE OF THE MOUSE REV1 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN INTERACTION DOMAIN; COMPND 5 SYNONYM: REV1-LIKE TERMINAL DEOXYCYTIDYL TRANSFERASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2 KEYWDS TRANSLESION DNA POLYMERASE, Y-FAMILY, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LIU,J.WOJTASZEK,P.ZHOU REVDAT 3 14-JUN-23 2LSG 1 REMARK SEQADV REVDAT 2 19-JUN-13 2LSG 1 JRNL REVDAT 1 20-JUN-12 2LSG 0 JRNL AUTH J.WOJTASZEK,J.LIU,S.D'SOUZA,S.WANG,Y.XUE,G.C.WALKER,P.ZHOU JRNL TITL MULTIFACETED RECOGNITION OF VERTEBRATE REV1 BY TRANSLESION JRNL TITL 2 POLYMERASES ZETA AND KAPPA. JRNL REF J.BIOL.CHEM. V. 287 26400 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22700975 JRNL DOI 10.1074/JBC.M112.380998 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CYANA REMARK 3 AUTHORS : GODDARD (SPARKY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102776. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1-0.125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9-1 MM [U-100% 15N] PROTEIN, REMARK 210 25 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM DTT, 1 REMARK 210 MM PMSF, 1 MM EDTA, 90% H2O/10% REMARK 210 D2O; 0.9-1 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 25 MM SODIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 10 MM DTT, 1 MM PMSF, REMARK 210 1 MM EDTA, 90% H2O/10% D2O; 0.9- REMARK 210 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 25 MM SODIUM PHOSPHATE, REMARK 210 100 MM POTASSIUM CHLORIDE, 10 MM REMARK 210 DTT, 1 MM PMSF, 1 MM EDTA, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D (HCA)CO(CA)NH; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D HA(CA)NH; 3D REMARK 210 HA(CACO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 4D HCCONH TOCSY; REMARK 210 4D HCCH-TOCSY; 4D 13C-HMQC-NOESY- REMARK 210 HSQC; 4D 13C-HMQC-NOESY-15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, TALOS, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 PHE A 5 REMARK 465 ARG A 6 REMARK 465 PRO A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 10 -178.99 -69.76 REMARK 500 1 THR A 30 -62.76 -90.57 REMARK 500 1 ASP A 55 30.78 -95.96 REMARK 500 2 SER A 33 -40.23 -130.78 REMARK 500 3 PRO A 10 -177.62 -69.81 REMARK 500 3 ASN A 11 101.73 -59.24 REMARK 500 3 PRO A 35 -179.53 -69.76 REMARK 500 3 ASP A 55 30.60 -96.31 REMARK 500 3 VAL A 103 76.81 -111.89 REMARK 500 4 PRO A 10 -179.28 -69.74 REMARK 500 4 ASN A 11 114.70 -171.45 REMARK 500 4 ASP A 55 30.81 -96.41 REMARK 500 4 VAL A 103 79.47 -104.00 REMARK 500 5 PRO A 10 97.33 -69.71 REMARK 500 5 ASP A 55 30.90 -96.72 REMARK 500 6 SER A 33 -51.51 -125.29 REMARK 500 6 ASP A 55 31.31 -96.75 REMARK 500 7 LEU A 12 -74.30 -131.91 REMARK 500 7 ASP A 55 31.41 -96.87 REMARK 500 8 LEU A 12 -68.04 -131.46 REMARK 500 8 PRO A 35 -178.50 -69.69 REMARK 500 8 VAL A 103 76.73 -111.92 REMARK 500 9 ASP A 55 31.12 -96.05 REMARK 500 9 VAL A 103 76.62 -104.34 REMARK 500 10 PRO A 10 -171.03 -69.84 REMARK 500 10 ALA A 13 -173.86 -59.47 REMARK 500 10 THR A 30 -63.11 -90.93 REMARK 500 10 ASP A 34 75.35 -113.18 REMARK 500 10 ASP A 55 30.77 -96.54 REMARK 500 11 PRO A 10 -174.24 -69.79 REMARK 500 11 ASP A 34 68.14 -118.09 REMARK 500 13 ASP A 55 33.49 -97.18 REMARK 500 13 VAL A 103 79.20 -101.80 REMARK 500 14 VAL A 103 61.37 -107.67 REMARK 500 15 PRO A 10 85.09 -69.77 REMARK 500 15 ASP A 55 31.70 -96.90 REMARK 500 15 VAL A 103 61.00 -111.81 REMARK 500 16 ALA A 15 120.64 174.16 REMARK 500 16 ASP A 34 67.80 63.59 REMARK 500 16 PRO A 35 -170.79 -69.85 REMARK 500 17 ASN A 11 33.07 -95.57 REMARK 500 17 ALA A 13 170.42 -51.60 REMARK 500 17 ALA A 15 102.28 62.82 REMARK 500 17 ASP A 55 31.60 -96.98 REMARK 500 17 SER A 99 -169.80 -118.56 REMARK 500 17 VAL A 103 76.21 -103.56 REMARK 500 18 VAL A 103 66.39 -116.54 REMARK 500 19 THR A 30 -63.47 -93.15 REMARK 500 19 ASP A 34 74.50 64.97 REMARK 500 19 ASP A 55 30.88 -96.40 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LSJ RELATED DB: PDB REMARK 900 RELATED ID: 18431 RELATED DB: BMRB DBREF 2LSG A 5 104 UNP Q920Q2 REV1_MOUSE 1150 1249 SEQADV 2LSG GLY A 1 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSG SER A 2 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSG GLY A 3 UNP Q920Q2 EXPRESSION TAG SEQADV 2LSG GLY A 4 UNP Q920Q2 EXPRESSION TAG SEQRES 1 A 104 GLY SER GLY GLY PHE ARG PRO ALA ALA PRO ASN LEU ALA SEQRES 2 A 104 GLY ALA VAL GLU PHE SER ASP VAL LYS THR LEU LEU LYS SEQRES 3 A 104 GLU TRP ILE THR THR ILE SER ASP PRO MET GLU GLU ASP SEQRES 4 A 104 ILE LEU GLN VAL VAL ARG TYR CYS THR ASP LEU ILE GLU SEQRES 5 A 104 GLU LYS ASP LEU GLU LYS LEU ASP LEU VAL ILE LYS TYR SEQRES 6 A 104 MET LYS ARG LEU MET GLN GLN SER VAL GLU SER VAL TRP SEQRES 7 A 104 ASN MET ALA PHE ASP PHE ILE LEU ASP ASN VAL GLN VAL SEQRES 8 A 104 VAL LEU GLN GLN THR TYR GLY SER THR LEU LYS VAL THR HELIX 1 1 GLU A 17 THR A 31 1 15 HELIX 2 2 MET A 36 GLU A 53 1 18 HELIX 3 3 ASP A 55 SER A 73 1 19 HELIX 4 4 GLU A 75 TYR A 97 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1