HEADER VIRAL PROTEIN 03-MAY-12 2LSN TITLE SOLUTION STRUCTURE OF PFV RNASE H DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNASE H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 591-751; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN SPUMARETROVIRUS; SOURCE 3 ORGANISM_COMMON: SFVCPZ(HU), PROTOTYPE FOAMY VIRUS; SOURCE 4 ORGANISM_TAXID: 11963; SOURCE 5 GENE: RNASE H; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-GB1 KEYWDS RNASE H, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR B.LEO,K.SCHWEIMER,B.WOEHRL REVDAT 4 15-MAY-24 2LSN 1 REMARK REVDAT 3 14-JUN-23 2LSN 1 REMARK SEQADV REVDAT 2 17-JUL-13 2LSN 1 DBREF COMPND SOURCE SEQADV REVDAT 2 2 1 REMARK REVDAT 1 17-OCT-12 2LSN 0 JRNL AUTH B.LEO,K.SCHWEIMER,P.ROSCH,M.J.HARTL,B.M.WOHRL JRNL TITL THE SOLUTION STRUCTURE OF THE PROTOTYPE FOAMY VIRUS RNASE H JRNL TITL 2 DOMAIN INDICATES AN IMPORTANT ROLE OF THE BASIC LOOP IN JRNL TITL 3 SUBSTRATE BINDING. JRNL REF RETROVIROLOGY V. 9 73 2012 JRNL REFN ESSN 1742-4690 JRNL PMID 22962864 JRNL DOI 10.1186/1742-4690-9-73 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, XPLOR-NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102783. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-13C; U-15N] PFV RNASE H, REMARK 210 90 % H2O, 10 % D2O, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 13C-13C-1H NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, XPLOR-NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 120 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 67 H ALA A 71 1.58 REMARK 500 O SER A 90 H LEU A 95 1.58 REMARK 500 H PHE A 10 O LEU A 79 1.58 REMARK 500 O THR A 82 H GLU A 135 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 24 32.44 -95.61 REMARK 500 1 LYS A 38 179.46 -51.46 REMARK 500 1 ASN A 53 57.52 -108.41 REMARK 500 1 ASN A 105 -70.72 -75.28 REMARK 500 1 LYS A 127 132.86 177.39 REMARK 500 1 LYS A 136 38.16 -96.15 REMARK 500 2 LYS A 38 178.79 -51.39 REMARK 500 2 ALA A 71 -72.00 -54.16 REMARK 500 2 ASN A 92 -72.81 -84.18 REMARK 500 2 LYS A 127 135.65 177.37 REMARK 500 3 TYR A 6 173.21 -55.69 REMARK 500 3 PRO A 22 78.27 -69.90 REMARK 500 3 SER A 25 169.61 63.10 REMARK 500 3 LYS A 38 179.59 -51.37 REMARK 500 3 ASN A 92 -72.97 -87.17 REMARK 500 3 ASN A 106 144.69 -170.64 REMARK 500 3 LYS A 127 143.85 176.35 REMARK 500 4 TYR A 6 -174.40 -52.11 REMARK 500 4 LYS A 24 41.04 -159.73 REMARK 500 4 LYS A 38 179.65 -51.29 REMARK 500 4 ASN A 53 36.64 75.63 REMARK 500 4 ASN A 92 -72.93 -89.67 REMARK 500 4 LYS A 127 146.87 163.37 REMARK 500 5 SER A 25 -67.17 -125.40 REMARK 500 5 ASN A 26 130.89 62.16 REMARK 500 5 LYS A 38 179.94 -51.32 REMARK 500 5 PHE A 66 -70.73 -53.89 REMARK 500 5 LYS A 127 157.32 171.24 REMARK 500 5 LYS A 136 34.27 -96.03 REMARK 500 5 GLN A 139 75.94 -105.67 REMARK 500 6 ASP A 21 -69.76 -100.11 REMARK 500 6 LYS A 24 30.98 -96.45 REMARK 500 6 SER A 25 -58.31 -134.37 REMARK 500 6 ASN A 26 129.25 62.36 REMARK 500 6 LYS A 38 179.56 -51.30 REMARK 500 6 ASN A 92 -72.83 -85.61 REMARK 500 6 LYS A 108 -73.26 -134.81 REMARK 500 6 LYS A 109 -66.32 176.83 REMARK 500 6 LYS A 112 146.83 61.81 REMARK 500 6 LYS A 127 135.64 -177.81 REMARK 500 6 LYS A 136 -149.67 49.16 REMARK 500 6 GLN A 139 70.65 47.93 REMARK 500 6 THR A 143 14.10 -144.15 REMARK 500 7 PRO A 22 60.54 -69.09 REMARK 500 7 SER A 25 163.50 68.72 REMARK 500 7 LYS A 38 -179.42 -51.65 REMARK 500 7 GLN A 42 117.78 -168.00 REMARK 500 7 ASN A 53 60.87 -104.89 REMARK 500 7 ASN A 92 -72.74 -92.56 REMARK 500 7 LYS A 112 139.43 62.74 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17745 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE IS NOT 100% HOMOLOGOUS, SINCE THEY REMARK 999 HAVE BEEN WORKING WITH A MOLECULAR CLONE. DBREF 2LSN A 5 165 UNP P14350 POL_FOAMV 591 751 SEQADV 2LSN GLY A 1 UNP P14350 EXPRESSION TAG SEQADV 2LSN ALA A 2 UNP P14350 EXPRESSION TAG SEQADV 2LSN MET A 3 UNP P14350 EXPRESSION TAG SEQADV 2LSN GLY A 4 UNP P14350 EXPRESSION TAG SEQADV 2LSN HIS A 138 UNP P14350 ILE 724 SEE REMARK 999 SEQADV 2LSN GLN A 139 UNP P14350 SER 725 SEE REMARK 999 SEQADV 2LSN PRO A 140 UNP P14350 LEU 726 SEE REMARK 999 SEQADV 2LSN THR A 141 UNP P14350 GLN 727 SEE REMARK 999 SEQADV 2LSN ASN A 142 UNP P14350 ILE 728 SEE REMARK 999 SEQADV 2LSN THR A 143 UNP P14350 PRO 729 SEE REMARK 999 SEQADV 2LSN SER A 144 UNP P14350 VAL 730 SEE REMARK 999 SEQADV 2LSN ILE A 145 UNP P14350 PHE 731 SEE REMARK 999 SEQADV 2LSN HIS A 146 UNP P14350 ILE 732 SEE REMARK 999 SEQADV 2LSN THR A 147 UNP P14350 LEU 733 SEE REMARK 999 SEQADV 2LSN GLU A 148 UNP P14350 LYS 734 SEE REMARK 999 SEQRES 1 A 165 GLY ALA MET GLY GLN TYR GLU GLY VAL PHE TYR THR ASP SEQRES 2 A 165 GLY SER ALA ILE LYS SER PRO ASP PRO THR LYS SER ASN SEQRES 3 A 165 ASN ALA GLY MET GLY ILE VAL HIS ALA THR TYR LYS PRO SEQRES 4 A 165 GLU TYR GLN VAL LEU ASN GLN TRP SER ILE PRO LEU GLY SEQRES 5 A 165 ASN HIS THR ALA GLN MET ALA GLU ILE ALA ALA VAL GLU SEQRES 6 A 165 PHE ALA CYS LYS LYS ALA LEU LYS ILE PRO GLY PRO VAL SEQRES 7 A 165 LEU VAL ILE THR ASP SER PHE TYR VAL ALA GLU SER ALA SEQRES 8 A 165 ASN LYS GLU LEU PRO TYR TRP LYS SER ASN GLY PHE VAL SEQRES 9 A 165 ASN ASN LYS LYS LYS PRO LEU LYS HIS ILE SER LYS TRP SEQRES 10 A 165 LYS SER ILE ALA GLU CYS LEU SER MET LYS PRO ASP ILE SEQRES 11 A 165 THR ILE GLN HIS GLU LYS GLY HIS GLN PRO THR ASN THR SEQRES 12 A 165 SER ILE HIS THR GLU GLY ASN ALA LEU ALA ASP LYS LEU SEQRES 13 A 165 ALA THR GLN GLY SER TYR VAL VAL ASN HELIX 1 1 THR A 55 ILE A 74 1 20 HELIX 2 2 SER A 84 LYS A 93 1 10 HELIX 3 3 LYS A 93 ASN A 101 1 9 HELIX 4 4 HIS A 113 LYS A 127 1 15 HELIX 5 5 SER A 144 VAL A 164 1 21 SHEET 1 A 5 VAL A 43 LEU A 51 0 SHEET 2 A 5 ASN A 27 ALA A 35 -1 N ILE A 32 O TRP A 47 SHEET 3 A 5 GLY A 8 ILE A 17 -1 N TYR A 11 O VAL A 33 SHEET 4 A 5 VAL A 78 THR A 82 1 O LEU A 79 N PHE A 10 SHEET 5 A 5 THR A 131 HIS A 134 1 O THR A 131 N VAL A 80 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1