HEADER PROTEIN BINDING 09-MAY-12 2LSY TITLE STRUCTURE OF THE C-TERMINAL DOMAIN FROM HUMAN REV1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR PROTEIN REV1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: ALPHA INTEGRIN-BINDING PROTEIN 80, AIBP80, REV1-LIKE COMPND 6 TERMINAL DEOXYCYTIDYL TRANSFERASE; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS DNA POLYMERASE, TRANSLESION SYNTHESIS, DNA REPAIR, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.POZHIDAEVA,Y.PUSTOVALOVA,I.BEZSONOVA,D.KORZHNEV REVDAT 3 14-JUN-23 2LSY 1 REMARK SEQADV REVDAT 2 19-JUN-13 2LSY 1 JRNL REVDAT 1 27-JUN-12 2LSY 0 JRNL AUTH A.POZHIDAEVA,Y.PUSTOVALOVA,S.D'SOUZA,I.BEZSONOVA,G.C.WALKER, JRNL AUTH 2 D.M.KORZHNEV JRNL TITL NMR STRUCTURE AND DYNAMICS OF THE C-TERMINAL DOMAIN FROM JRNL TITL 2 HUMAN REV1 AND ITS COMPLEX WITH REV1 INTERACTING REGION OF JRNL TITL 3 DNA POLYMERASE ETA. JRNL REF BIOCHEMISTRY V. 51 5506 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22691049 JRNL DOI 10.1021/BI300566Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, CNS REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102794. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 REV1-CT, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.25 MM REMARK 210 EDTA, 5 MM DTT, 0.05 % SODIUM REMARK 210 AZIDE, 90 % H2O, 10 % [U-2H] D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, CYANA, MOLMOL, VNMRJ, REMARK 210 NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 VAL A1163 -63.13 -95.12 REMARK 500 4 THR A1243 -62.86 -94.06 REMARK 500 5 VAL A1163 -72.45 -92.69 REMARK 500 6 ALA A1160 19.69 59.32 REMARK 500 6 ASP A1181 86.82 -151.01 REMARK 500 7 SER A1180 -66.49 69.50 REMARK 500 7 VAL A1221 78.28 -69.70 REMARK 500 8 VAL A1250 100.91 41.00 REMARK 500 9 VAL A1163 -53.71 -125.93 REMARK 500 9 THR A1243 -62.84 -95.74 REMARK 500 9 VAL A1250 93.34 50.07 REMARK 500 10 ASN A1158 116.11 64.49 REMARK 500 11 VAL A1250 104.20 -59.87 REMARK 500 12 TRP A1175 -71.22 -72.54 REMARK 500 12 VAL A1250 99.01 -69.28 REMARK 500 13 VAL A1163 -68.44 -102.78 REMARK 500 15 VAL A1163 -61.03 -125.47 REMARK 500 15 VAL A1250 99.03 -43.17 REMARK 500 16 VAL A1250 103.00 65.07 REMARK 500 17 VAL A1163 -71.36 -128.26 REMARK 500 18 THR A1243 -61.36 -91.39 REMARK 500 18 LYS A1249 35.01 -80.32 REMARK 500 19 VAL A1250 33.22 -86.55 REMARK 500 20 VAL A1221 21.75 46.91 REMARK 500 20 THR A1243 -61.26 -90.57 REMARK 500 20 LYS A1249 40.95 -74.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LSK RELATED DB: PDB REMARK 900 RELATED ID: 18455 RELATED DB: BMRB DBREF 2LSY A 1158 1251 UNP Q9UBZ9 REV1_HUMAN 1158 1251 SEQADV 2LSY GLY A 1157 UNP Q9UBZ9 EXPRESSION TAG SEQRES 1 A 95 GLY ASN LEU ALA GLY ALA VAL GLU PHE ASN ASP VAL LYS SEQRES 2 A 95 THR LEU LEU ARG GLU TRP ILE THR THR ILE SER ASP PRO SEQRES 3 A 95 MET GLU GLU ASP ILE LEU GLN VAL VAL LYS TYR CYS THR SEQRES 4 A 95 ASP LEU ILE GLU GLU LYS ASP LEU GLU LYS LEU ASP LEU SEQRES 5 A 95 VAL ILE LYS TYR MET LYS ARG LEU MET GLN GLN SER VAL SEQRES 6 A 95 GLU SER VAL TRP ASN MET ALA PHE ASP PHE ILE LEU ASP SEQRES 7 A 95 ASN VAL GLN VAL VAL LEU GLN GLN THR TYR GLY SER THR SEQRES 8 A 95 LEU LYS VAL THR HELIX 1 1 GLU A 1164 ILE A 1179 1 16 HELIX 2 2 MET A 1183 GLU A 1200 1 18 HELIX 3 3 ASP A 1202 SER A 1220 1 19 HELIX 4 4 SER A 1223 TYR A 1244 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1