HEADER TRANSCRIPTION 10-MAY-12 2LT1 TITLE SOLUTION NMR STRUCTURE OF THE 72-RESIDUE N-TERMINAL DOMAIN OF TITLE 2 MYXOCOCCUS XANTHUS CARD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 34; SOURCE 4 GENE: CARD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS CARD, CDNL, TRCF-RID, PF02559, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.JIMENEZ,S.PADMANABHAN REVDAT 3 14-JUN-23 2LT1 1 REMARK SEQADV REVDAT 2 08-APR-15 2LT1 1 JRNL REVDAT 1 13-NOV-13 2LT1 0 JRNL AUTH D.BERNAL-BERNAL,A.GALLEGO-GARCIA,G.GARCIA-MARTINEZ, JRNL AUTH 2 F.GARCIA-HERAS,M.A.JIMENEZ,S.PADMANABHAN,M.ELIAS-ARNANZ JRNL TITL STRUCTURE-FUNCTION DISSECTION OF MYXOCOCCUS XANTHUS CARD JRNL TITL 2 N-TERMINAL DOMAIN, A DEFINING MEMBER OF THE CARD_CDNL_TRCF JRNL TITL 3 FAMILY OF RNA POLYMERASE INTERACTING PROTEINS. JRNL REF PLOS ONE V. 10 21322 JRNL REFN ESSN 1932-6203 JRNL PMID 25811865 JRNL DOI 10.1371/JOURNAL.PONE.0121322 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), REMARK 3 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH, REMARK 3 WEINER,KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102797. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CARD1, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.5 MM REMARK 210 DSS, 90 % H2O, 10 % D2O, 90% H2O/ REMARK 210 10% D2O; 1 MM CARD1, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.5 MM REMARK 210 DSS, 100 % D2O, 100% D2O; 1 MM REMARK 210 [U-100% 13C; U-100% 15N] CARD1, REMARK 210 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.01 % SODIUM REMARK 210 AZIDE, 2 MM BETA-MERCAPTOETHANOL, REMARK 210 0.5 MM DSS, 90 % H2O, 10 % D2O, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] CARD1, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.01 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.5 MM REMARK 210 DSS, 100 % D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HBHANH; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 8 18.76 -152.76 REMARK 500 1 LEU A 11 -73.63 -66.49 REMARK 500 1 ASN A 23 -41.19 -148.76 REMARK 500 1 ALA A 38 29.10 48.52 REMARK 500 2 SER A 8 -74.33 -131.15 REMARK 500 2 ALA A 9 118.66 -165.97 REMARK 500 2 LEU A 11 -71.67 -115.66 REMARK 500 2 ASN A 23 51.31 -159.80 REMARK 500 2 GLN A 24 -61.60 -140.36 REMARK 500 2 ALA A 38 29.07 49.94 REMARK 500 2 SER A 73 -51.30 -138.31 REMARK 500 3 SER A 8 95.51 -59.11 REMARK 500 3 ASN A 23 55.50 -158.51 REMARK 500 3 GLN A 24 -60.79 -146.82 REMARK 500 3 ALA A 38 28.97 48.50 REMARK 500 3 SER A 73 -55.71 -146.88 REMARK 500 4 SER A 8 -78.96 -132.78 REMARK 500 4 ALA A 9 48.01 -158.31 REMARK 500 4 ASN A 23 48.87 -159.07 REMARK 500 4 GLN A 24 -64.12 -139.41 REMARK 500 4 ALA A 38 29.08 49.05 REMARK 500 5 SER A 8 -33.49 -147.23 REMARK 500 5 ASN A 23 -60.17 -133.46 REMARK 500 5 ALA A 38 28.86 48.81 REMARK 500 6 LEU A 11 -75.41 -69.52 REMARK 500 6 ASN A 23 32.37 -148.75 REMARK 500 6 ALA A 38 29.20 48.41 REMARK 500 7 ALA A 9 -82.15 -152.99 REMARK 500 7 LEU A 11 -66.92 -95.64 REMARK 500 7 ASN A 23 47.66 -157.77 REMARK 500 7 GLN A 24 -64.19 -137.86 REMARK 500 7 ALA A 38 28.95 47.85 REMARK 500 8 ASN A 23 62.77 -158.15 REMARK 500 8 GLN A 24 -61.88 -146.43 REMARK 500 8 ALA A 38 29.01 49.54 REMARK 500 9 ASN A 23 64.40 -157.95 REMARK 500 9 GLN A 24 -71.07 -151.90 REMARK 500 9 ALA A 38 29.09 48.53 REMARK 500 9 VAL A 71 -75.81 -150.41 REMARK 500 9 ALA A 72 -45.44 -177.57 REMARK 500 10 ASN A 23 62.62 -160.20 REMARK 500 10 GLN A 24 -68.53 -151.86 REMARK 500 10 ALA A 38 29.13 49.09 REMARK 500 10 SER A 73 -48.66 -137.50 REMARK 500 11 GLU A 6 -54.59 -138.07 REMARK 500 11 SER A 10 -74.24 -66.54 REMARK 500 11 LEU A 11 -80.02 -123.60 REMARK 500 11 ASN A 23 62.48 -157.78 REMARK 500 11 GLN A 24 -66.37 -150.24 REMARK 500 11 ALA A 38 28.99 46.06 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18194 RELATED DB: BMRB REMARK 900 RELATED ID: 18121 RELATED DB: BMRB REMARK 900 CDNL N-TERMINAL DOMAIN FROM MYXOCOCCUS XANTHUS RESIDUES 1-68 REMARK 900 RELATED ID: 18151 RELATED DB: BMRB REMARK 900 CDNL FROM MYXOCOCCUS XANTHUS REMARK 900 RELATED ID: 18193 RELATED DB: BMRB REMARK 900 TTCDNL N-TERMINAL DOMAIN FROM THERMUS THERMOPHILUS RESIDUES 1-67 DBREF 2LT1 A 4 75 UNP Q50887 Q50887_MYXXA 1 72 SEQADV 2LT1 ALA A 1 UNP Q50887 EXPRESSION TAG SEQADV 2LT1 GLY A 2 UNP Q50887 EXPRESSION TAG SEQADV 2LT1 HIS A 3 UNP Q50887 EXPRESSION TAG SEQRES 1 A 75 ALA GLY HIS MET PRO GLU GLY SER ALA SER LEU GLN LEU SEQRES 2 A 75 ALA VAL GLY ASP ARG VAL VAL TYR PRO ASN GLN GLY VAL SEQRES 3 A 75 CYS ARG VAL SER ALA ILE ASP VAL LYS GLU VAL ALA GLY SEQRES 4 A 75 GLN LYS LEU THR PHE VAL THR MET ARG ARG GLU GLU ASP SEQRES 5 A 75 GLY ALA VAL VAL MET VAL PRO GLU GLY LYS VAL LEU ALA SEQRES 6 A 75 ILE GLY VAL ARG LYS VAL ALA SER ALA GLU HELIX 1 1 LYS A 62 GLY A 67 1 6 SHEET 1 A 4 ARG A 18 VAL A 20 0 SHEET 2 A 4 VAL A 26 VAL A 37 -1 O CYS A 27 N VAL A 19 SHEET 3 A 4 GLN A 40 ARG A 48 -1 O ARG A 48 N ARG A 28 SHEET 4 A 4 VAL A 55 PRO A 59 -1 O VAL A 56 N MET A 47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1