HEADER TRANSCRIPTION 14-MAY-12 2LT4 TITLE CDNLNT FROM MYXOCCOCCUS XANTHUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CARD FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: MXAN_2627; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB12 KEYWDS CDNL, CARD, TRCF-RID, PF02559, RNA POLYMERASE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.JIMENEZ,S.PADMANABHAN,Y.MIRASSOU REVDAT 3 14-JUN-23 2LT4 1 REMARK SEQADV REVDAT 2 15-OCT-14 2LT4 1 JRNL REVDAT 1 13-NOV-13 2LT4 0 JRNL AUTH A.GALLEGO-GARCIA,Y.MIRASSOU,D.GARCIA-MORENO,M.ELIAS-ARNANZ, JRNL AUTH 2 M.A.JIMENEZ,S.PADMANABHAN JRNL TITL STRUCTURAL INSIGHTS INTO RNA POLYMERASE RECOGNITION AND JRNL TITL 2 ESSENTIAL FUNCTION OF MYXOCOCCUS XANTHUS CDNL. JRNL REF PLOS ONE V. 9 08946 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25272012 JRNL DOI 10.1371/JOURNAL.PONE.0108946 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.MIRASSOU,M.ELIAS-ARNANZ,S.PADMANABHAN,M.JIMENEZ REMARK 1 TITL 1H, 13C AND 15N ASSIGNMENTS OF CDNL, AN ESSENTIAL PROTEIN IN REMARK 1 TITL 2 MYXOCOCCUS XANTHUS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LT4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102800. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 288 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.15; 0.15 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM CDNLNT, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 90% H2O/10% D2O; 1 REMARK 210 MM CDNLNT, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 100% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] CDNLNT, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 0.5 MM DSS, 90% H2O/10% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] CDNLNT, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, REMARK 210 0.5 MM DSS, 100% D2O; 0.5 MM [U- REMARK 210 100% 13C; U-100% 15N] CDNLNT, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 0.25 MM DSS, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 24 107.11 -59.14 REMARK 500 1 SER A 60 -79.19 -168.15 REMARK 500 1 VAL A 61 -39.01 -136.27 REMARK 500 1 ILE A 67 93.60 -62.25 REMARK 500 1 SER A 68 33.22 -83.36 REMARK 500 2 SER A 7 90.89 -54.99 REMARK 500 2 SER A 60 -60.39 -176.69 REMARK 500 2 VAL A 61 -31.54 -142.82 REMARK 500 2 SER A 68 93.57 -60.29 REMARK 500 3 GLN A 19 -47.25 -131.20 REMARK 500 3 SER A 60 -54.30 -167.71 REMARK 500 3 VAL A 61 -44.68 -137.42 REMARK 500 3 SER A 68 96.10 -69.85 REMARK 500 3 GLU A 70 -69.28 -129.28 REMARK 500 4 HIS A 3 62.49 -155.93 REMARK 500 4 MET A 4 41.67 -159.88 REMARK 500 4 LYS A 9 -175.38 -69.10 REMARK 500 4 GLN A 19 -38.34 -140.74 REMARK 500 4 SER A 60 -77.61 -171.41 REMARK 500 4 VAL A 61 -37.76 -145.07 REMARK 500 4 GLU A 70 -73.21 -100.99 REMARK 500 5 SER A 60 -51.78 -167.66 REMARK 500 5 VAL A 61 -38.06 -143.19 REMARK 500 5 SER A 68 91.59 -65.51 REMARK 500 6 HIS A 3 107.77 -56.52 REMARK 500 6 SER A 60 -69.40 -164.01 REMARK 500 6 VAL A 61 -38.28 -136.88 REMARK 500 6 SER A 68 96.35 -69.69 REMARK 500 7 LYS A 9 -174.36 -69.98 REMARK 500 7 VAL A 24 107.12 -59.57 REMARK 500 7 SER A 60 -71.54 -163.63 REMARK 500 7 VAL A 61 -38.01 -131.69 REMARK 500 7 GLU A 70 -68.46 -98.94 REMARK 500 8 LYS A 9 -168.25 -73.42 REMARK 500 8 ALA A 33 27.06 49.49 REMARK 500 8 LYS A 57 50.75 -153.21 REMARK 500 8 SER A 60 -61.61 -172.59 REMARK 500 8 SER A 68 97.33 -62.38 REMARK 500 8 GLU A 70 -70.32 -66.35 REMARK 500 9 GLN A 19 -38.64 -166.26 REMARK 500 9 SER A 60 -79.34 -164.81 REMARK 500 9 VAL A 61 -34.67 -147.33 REMARK 500 10 MET A 4 48.79 -159.71 REMARK 500 10 THR A 6 -71.56 -69.86 REMARK 500 10 SER A 60 -62.83 -168.15 REMARK 500 10 VAL A 61 -58.30 -141.35 REMARK 500 10 ILE A 66 -167.24 -117.66 REMARK 500 10 SER A 68 102.08 -57.32 REMARK 500 10 GLU A 70 -72.33 -143.03 REMARK 500 11 THR A 6 -63.32 -132.58 REMARK 500 REMARK 500 THIS ENTRY HAS 98 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 TYR A 40 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LT3 RELATED DB: PDB REMARK 900 RELATED ID: 18151 RELATED DB: BMRB REMARK 900 CDNL REMARK 900 RELATED ID: 18121 RELATED DB: BMRB DBREF 2LT4 A 4 71 UNP Q1D927 Q1D927_MYXXD 1 68 SEQADV 2LT4 ALA A 1 UNP Q1D927 EXPRESSION TAG SEQADV 2LT4 GLY A 2 UNP Q1D927 EXPRESSION TAG SEQADV 2LT4 HIS A 3 UNP Q1D927 EXPRESSION TAG SEQRES 1 A 71 ALA GLY HIS MET GLN THR SER PHE LYS THR GLY ASP LYS SEQRES 2 A 71 ALA VAL TYR PRO GLY GLN GLY VAL GLY GLU VAL MET GLY SEQRES 3 A 71 ILE GLU HIS THR GLU VAL ALA GLY GLN ARG GLN SER PHE SEQRES 4 A 71 TYR VAL LEU ARG ILE LEU GLU ASN GLY MET ARG ILE MET SEQRES 5 A 71 ILE PRO ILE ASN LYS VAL GLY SER VAL GLY LEU ARG GLU SEQRES 6 A 71 ILE ILE SER GLU GLU ASP HELIX 1 1 ILE A 55 GLY A 59 1 5 SHEET 1 A 3 GLU A 23 VAL A 32 0 SHEET 2 A 3 GLN A 35 ARG A 43 -1 O PHE A 39 N GLU A 28 SHEET 3 A 3 ARG A 50 PRO A 54 -1 O ILE A 53 N TYR A 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1