HEADER PROTEIN TRANSPORT, ENDOCYTOSIS 13-JUN-12 2LUH TITLE NMR STRUCTURE OF THE VTA1-VPS60 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VPS20-ASSOCIATED PROTEIN 1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 60; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: CHARGED MULTIVESICULAR BODY PROTEIN 5; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: VTA1, YLR181C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: VPS60, CHM5, MOS10, YDR486C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS VTA1, VPS60, ESCRT, MVB, NOVEL MIT RECOGNITION MODE, PROTEIN KEYWDS 2 TRANSPORT, ENDOCYTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.YANG,C.VILD,J.JU,X.ZHANG,J.LIU,J.SHEN,B.ZHAO,W.LAN,F.GONG,M.LIU, AUTHOR 2 C.CAO,Z.XU REVDAT 5 15-MAY-24 2LUH 1 REMARK REVDAT 4 14-JUN-23 2LUH 1 REMARK REVDAT 3 09-JAN-13 2LUH 1 JRNL REVDAT 2 14-NOV-12 2LUH 1 JRNL REVDAT 1 07-NOV-12 2LUH 0 JRNL AUTH Z.YANG,C.VILD,J.JU,X.ZHANG,J.LIU,J.SHEN,B.ZHAO,W.LAN,F.GONG, JRNL AUTH 2 M.LIU,C.CAO,Z.XU JRNL TITL STRUCTURAL BASIS OF MOLECULAR RECOGNITION BETWEEN JRNL TITL 2 ESCRT-III-LIKE PROTEIN VPS60 AND AAA-ATPASE REGULATOR VTA1 JRNL TITL 3 IN THE MULTIVESICULAR BODY PATHWAY. JRNL REF J.BIOL.CHEM. V. 287 43899 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23105107 JRNL DOI 10.1074/JBC.M112.390724 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH NIH, X-PLOR NIH NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102848. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.15 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0-1.2 MM [U-13C; U-15N] REMARK 210 PROTEIN_1, 1.0-1.2 MM PROTEIN_2, REMARK 210 90% H2O/10% D2O; 1.0-1.2 MM [U- REMARK 210 13C; U-15N] PROTEIN_1, 1.0-1.2 REMARK 210 MM PROTEIN_2, 100% D2O; 1.0-1.2 REMARK 210 MM PROTEIN_1, 1.0-1.2 MM [U-13C; REMARK 210 U-15N] PROTEIN_2, 90% H2O/10% REMARK 210 D2O; 1.0-1.2 MM PROTEIN_1, 1.0- REMARK 210 1.2 MM [U-13C; U-15N] PROTEIN_2, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, TALOS, VNMRJ, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 72 96.91 -161.41 REMARK 500 1 LYS A 74 -75.05 -94.59 REMARK 500 1 ASP A 110 -5.72 -167.46 REMARK 500 1 TRP A 135 57.13 -140.47 REMARK 500 1 ASP B 135 -120.37 -140.27 REMARK 500 1 ASN B 158 106.78 170.27 REMARK 500 1 SER B 167 69.17 -59.77 REMARK 500 2 LEU A 20 62.97 -101.55 REMARK 500 2 SER A 72 97.60 -161.29 REMARK 500 2 LYS A 74 -76.05 -95.35 REMARK 500 2 ASP A 110 -5.49 -167.56 REMARK 500 2 ASP B 138 -74.35 -91.24 REMARK 500 2 ASN B 158 106.76 170.86 REMARK 500 2 SER B 167 71.94 -58.61 REMARK 500 3 LEU A 20 41.37 -101.60 REMARK 500 3 SER A 67 -31.27 -133.15 REMARK 500 3 LYS A 74 -75.28 -98.55 REMARK 500 3 ASP A 110 -24.81 -168.35 REMARK 500 3 TRP A 135 59.85 -142.21 REMARK 500 3 ASP B 135 -128.98 -160.37 REMARK 500 3 ASN B 158 106.75 164.64 REMARK 500 3 SER B 167 72.43 -58.06 REMARK 500 4 LEU A 20 58.77 -103.94 REMARK 500 4 LYS A 74 -74.83 -95.53 REMARK 500 4 ASP A 110 -20.94 -168.24 REMARK 500 4 TRP A 135 55.56 -140.10 REMARK 500 4 ASN B 129 20.25 -73.58 REMARK 500 4 ASN B 158 102.77 -176.35 REMARK 500 4 SER B 167 72.30 -58.55 REMARK 500 5 LEU A 20 50.59 -99.10 REMARK 500 5 GLU A 66 -87.77 -86.77 REMARK 500 5 SER A 72 99.19 -163.74 REMARK 500 5 LYS A 74 -76.14 -93.89 REMARK 500 5 ASP A 110 -26.29 -175.36 REMARK 500 5 ASP B 135 -123.12 -167.54 REMARK 500 5 ASN B 158 104.07 -177.55 REMARK 500 5 SER B 167 68.61 -60.35 REMARK 500 6 LEU A 20 33.49 -99.62 REMARK 500 6 SER A 72 98.10 -160.94 REMARK 500 6 LYS A 74 -75.66 -95.89 REMARK 500 6 ASP A 110 -22.52 -169.34 REMARK 500 6 ASP B 135 -131.18 -155.10 REMARK 500 6 ASN B 158 101.10 85.59 REMARK 500 6 SER B 167 76.05 -57.79 REMARK 500 7 LYS A 74 -76.59 -95.70 REMARK 500 7 ASP A 110 -4.98 -166.97 REMARK 500 7 ASN B 129 20.13 -76.28 REMARK 500 7 ASP B 135 89.49 -150.02 REMARK 500 7 ASP B 138 -160.36 -164.38 REMARK 500 7 ASN B 158 109.52 164.81 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18521 RELATED DB: BMRB DBREF 2LUH A 1 167 UNP Q06263 VTA1_YEAST 1 167 DBREF 2LUH B 128 186 UNP Q03390 VPS60_YEAST 128 186 SEQRES 1 A 167 MET ALA SER ASN ALA ALA ARG VAL VAL ALA THR ALA LYS SEQRES 2 A 167 ASP PHE ASP LYS VAL GLY LEU GLY ILE ILE GLY TYR TYR SEQRES 3 A 167 LEU GLN LEU TYR ALA VAL GLU LEU ILE LEU SER GLU GLU SEQRES 4 A 167 ASP ARG SER GLN GLU MET THR ALA LEU ALA THR GLU LEU SEQRES 5 A 167 LEU ASP THR ILE GLU ALA PHE LYS LYS GLU ILE GLY GLY SEQRES 6 A 167 GLU SER GLU ALA GLU ASP SER ASP LYS SER LEU HIS VAL SEQRES 7 A 167 MET ASN THR LEU ILE HIS ASP GLN GLU LYS ALA LYS ILE SEQRES 8 A 167 TYR MET LEU ASN PHE THR MET SER LEU TYR ASN GLU LYS SEQRES 9 A 167 LEU LYS GLN LEU LYS ASP GLY PRO TRP ASP VAL MET LEU SEQRES 10 A 167 LYS ARG SER LEU TRP CYS CYS ILE ASP LEU PHE SER CYS SEQRES 11 A 167 ILE LEU HIS LEU TRP LYS GLU ASN ILE SER GLU THR SER SEQRES 12 A 167 THR ASN SER LEU GLN LYS ARG ILE LYS TYR CYS LYS ILE SEQRES 13 A 167 TYR LEU SER LYS LEU ALA LYS GLY GLU ILE GLY SEQRES 1 B 59 ILE ASN ILE ASP LYS LEU GLN ASP MET GLN ASP GLU MET SEQRES 2 B 59 LEU ASP LEU ILE GLU GLN GLY ASP GLU LEU GLN GLU VAL SEQRES 3 B 59 LEU ALA MET ASN ASN ASN SER GLY GLU LEU ASP ASP ILE SEQRES 4 B 59 SER ASP ALA GLU LEU ASP ALA GLU LEU ASP ALA LEU ALA SEQRES 5 B 59 GLN GLU ASP PHE THR LEU PRO HELIX 1 1 MET A 1 GLY A 19 1 19 HELIX 2 2 LEU A 20 SER A 37 1 18 HELIX 3 3 SER A 42 GLY A 65 1 24 HELIX 4 4 SER A 67 SER A 72 1 6 HELIX 5 5 LYS A 74 ASP A 85 1 12 HELIX 6 6 ASP A 85 GLY A 111 1 27 HELIX 7 7 ASP A 114 TRP A 135 1 22 HELIX 8 8 SER A 140 LYS A 163 1 24 HELIX 9 9 ASN B 129 ASP B 135 1 7 HELIX 10 10 GLU B 139 ASN B 159 1 21 HELIX 11 11 GLU B 162 ILE B 166 5 5 HELIX 12 12 SER B 167 PHE B 183 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1