HEADER HYDROLASE 17-JUL-12 2LVZ TITLE SOLUTION STRUCTURE OF A EOSINOPHIL CATIONIC PROTEIN-TRISACCHARIDE TITLE 2 HEPARIN MIMETIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EOSINOPHIL CATIONIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ECP, RIBONUCLEASE 3, RNASE 3; COMPND 5 EC: 3.1.27.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNASE3, ECP, RNS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11C KEYWDS HEPARIN, MOLECULAR RECOGNITION, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.GARCIA MAYORAL,A.CANALES,D.DIAZ,J.LOPEZ PRADOS,M.MOUSSAOUI,J.DE AUTHOR 2 PAZ,J.ANGULO,P.NIETO,J.JIMENEZ BARBERO,E.BOIX,M.BRUIX REVDAT 2 29-JUL-20 2LVZ 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE ATOM REVDAT 1 31-JUL-13 2LVZ 0 JRNL AUTH M.F.GARCIA-MAYORAL,A.CANALES,D.DIAZ,J.LOPEZ-PRADOS, JRNL AUTH 2 M.MOUSSAOUI,J.L.DE PAZ,J.ANGULO,P.M.NIETO,J.JIMENEZ-BARBERO, JRNL AUTH 3 E.BOIX,M.BRUIX JRNL TITL INSIGHTS INTO THE GLYCOSAMINOGLYCAN-MEDIATED CYTOTOXIC JRNL TITL 2 MECHANISM OF EOSINOPHIL CATIONIC PROTEIN REVEALED BY NMR. JRNL REF ACS CHEM.BIOL. V. 8 144 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23025322 JRNL DOI 10.1021/CB300386V REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER, AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLMAN (AMBER), CASE, DARDEN, REMARK 3 CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, AND REMARK 3 KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102900. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 0.3 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] EOSINOPHIL REMARK 210 CATIONIC PROTEIN, 0.5 MM HEPARIN REMARK 210 (3-MER), 100 MM POTASSIUM REMARK 210 PHOSPHATE, 300 MM POTASSIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY; 2D 1H-15N HSQC; 2D REMARK 210 1H-1H NOESY; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HN(CO)CA; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 2 TYR A 33 CZ TYR A 33 CE2 0.084 REMARK 500 2 ARG A 61 CZ ARG A 61 NH1 -0.086 REMARK 500 3 HIS A 72 CG HIS A 72 CD2 0.062 REMARK 500 3 PRO A 116 CD PRO A 116 N -0.086 REMARK 500 4 TYR A 122 CD1 TYR A 122 CE1 0.098 REMARK 500 5 ARG A 97 CZ ARG A 97 NH2 -0.090 REMARK 500 5 TYR A 98 CG TYR A 98 CD2 0.081 REMARK 500 6 ARG A 61 CZ ARG A 61 NH1 -0.098 REMARK 500 6 TYR A 122 CE1 TYR A 122 CZ 0.078 REMARK 500 6 HIS A 128 CG HIS A 128 CD2 0.062 REMARK 500 7 ARG A 97 CZ ARG A 97 NH2 -0.092 REMARK 500 8 HIS A 64 CG HIS A 64 CD2 0.060 REMARK 500 8 GLY A 89 CA GLY A 89 C 0.103 REMARK 500 8 PRO A 120 N PRO A 120 CA 0.107 REMARK 500 11 ARG A 97 CD ARG A 97 NE 0.106 REMARK 500 12 ARG A 28 CZ ARG A 28 NH1 -0.079 REMARK 500 12 CYS A 62 CB CYS A 62 SG -0.104 REMARK 500 12 PRO A 63 CD PRO A 63 N -0.112 REMARK 500 12 ARG A 75 CZ ARG A 75 NH1 -0.090 REMARK 500 12 SER A 94 CA SER A 94 CB 0.099 REMARK 500 12 ARG A 97 CZ ARG A 97 NH2 -0.079 REMARK 500 13 ARG A 1 CZ ARG A 1 NH1 -0.093 REMARK 500 13 ARG A 7 CZ ARG A 7 NH2 -0.083 REMARK 500 14 ARG A 22 CZ ARG A 22 NH1 -0.094 REMARK 500 16 ARG A 28 CZ ARG A 28 NH1 -0.080 REMARK 500 17 TYR A 33 CG TYR A 33 CD1 0.094 REMARK 500 17 TYR A 33 CE1 TYR A 33 CZ 0.082 REMARK 500 18 SER A 59 CB SER A 59 OG 0.082 REMARK 500 18 ARG A 75 CZ ARG A 75 NH1 -0.079 REMARK 500 18 ARG A 117 CZ ARG A 117 NH1 -0.079 REMARK 500 19 CYS A 23 CB CYS A 23 SG -0.130 REMARK 500 19 ARG A 75 NE ARG A 75 CZ -0.083 REMARK 500 20 HIS A 64 NE2 HIS A 64 CD2 -0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ARG A 1 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 1 HIS A 15 CB - CG - CD2 ANGL. DEV. = -10.5 DEGREES REMARK 500 1 ARG A 22 NH1 - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 1 ARG A 22 NE - CZ - NH1 ANGL. DEV. = 8.6 DEGREES REMARK 500 1 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 1 PHE A 43 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 1 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 PHE A 48 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 1 VAL A 51 CA - CB - CG2 ANGL. DEV. = 10.1 DEGREES REMARK 500 1 VAL A 52 CA - CB - CG1 ANGL. DEV. = 10.2 DEGREES REMARK 500 1 VAL A 54 CG1 - CB - CG2 ANGL. DEV. = -11.0 DEGREES REMARK 500 1 CYS A 55 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 1 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 1 ARG A 66 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 73 NH1 - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 1 ARG A 73 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 1 ARG A 75 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 1 ARG A 77 NH1 - CZ - NH2 ANGL. DEV. = -12.3 DEGREES REMARK 500 1 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 9.0 DEGREES REMARK 500 1 PRO A 79 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 1 PRO A 88 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 1 TYR A 98 CB - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 ARG A 101 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 105 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 1 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 7.9 DEGREES REMARK 500 1 ARG A 117 NE - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 1 ARG A 121 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 TYR A 122 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 2 ARG A 1 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 2 ARG A 1 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 ARG A 7 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 ARG A 7 NE - CZ - NH2 ANGL. DEV. = -8.3 DEGREES REMARK 500 2 ARG A 22 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 TYR A 33 CG - CD1 - CE1 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 ARG A 34 NH1 - CZ - NH2 ANGL. DEV. = -10.6 DEGREES REMARK 500 2 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 VAL A 54 CA - CB - CG1 ANGL. DEV. = 9.3 DEGREES REMARK 500 2 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 2 ARG A 75 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 2 PHE A 76 CB - CG - CD1 ANGL. DEV. = -5.2 DEGREES REMARK 500 2 HIS A 82 CE1 - NE2 - CD2 ANGL. DEV. = 5.0 DEGREES REMARK 500 2 ASP A 84 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 2 PRO A 88 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 568 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 30 -39.17 -143.96 REMARK 500 1 ILE A 60 -168.15 -118.73 REMARK 500 1 LEU A 68 -20.74 -143.24 REMARK 500 1 ASN A 69 40.78 39.63 REMARK 500 1 PRO A 88 -9.50 -48.85 REMARK 500 1 ASN A 95 -20.37 -142.84 REMARK 500 1 ASN A 113 159.81 -48.40 REMARK 500 1 SER A 119 58.17 38.95 REMARK 500 1 VAL A 127 -7.28 -162.93 REMARK 500 2 PRO A 2 158.09 -43.95 REMARK 500 2 HIS A 15 -13.50 -142.64 REMARK 500 2 PRO A 20 162.78 -45.63 REMARK 500 2 ILE A 30 -32.70 -138.44 REMARK 500 2 TYR A 33 -37.17 -135.45 REMARK 500 2 GLN A 91 -4.82 -140.54 REMARK 500 2 ARG A 101 88.69 -159.24 REMARK 500 2 ARG A 117 29.46 -142.10 REMARK 500 2 PRO A 120 -33.88 -37.36 REMARK 500 2 ASP A 130 -50.14 -121.84 REMARK 500 3 PRO A 2 159.15 -46.92 REMARK 500 3 ASN A 19 73.95 -150.73 REMARK 500 3 ILE A 30 -39.97 -137.89 REMARK 500 3 ARG A 45 51.13 -91.75 REMARK 500 3 GLN A 58 -179.57 -63.72 REMARK 500 3 HIS A 64 35.46 -146.50 REMARK 500 3 THR A 67 4.67 -62.47 REMARK 500 3 LEU A 68 -14.40 -147.79 REMARK 500 3 LEU A 85 80.77 -66.71 REMARK 500 3 ASN A 95 -17.35 -145.23 REMARK 500 3 ASN A 113 154.36 -42.03 REMARK 500 3 PRO A 116 0.54 -59.76 REMARK 500 3 ARG A 117 -3.64 -148.59 REMARK 500 3 PRO A 120 -5.28 -56.60 REMARK 500 4 PRO A 3 -16.02 -36.93 REMARK 500 4 GLN A 4 -10.77 -146.72 REMARK 500 4 HIS A 15 -14.21 -144.06 REMARK 500 4 PRO A 21 168.18 -48.89 REMARK 500 4 ALA A 29 -8.18 -57.91 REMARK 500 4 ILE A 30 -38.57 -142.36 REMARK 500 4 ARG A 45 61.81 -101.93 REMARK 500 4 ASN A 57 162.85 -48.97 REMARK 500 4 ASN A 69 46.52 31.59 REMARK 500 4 PRO A 88 19.98 -47.67 REMARK 500 4 GLN A 91 -4.22 -141.96 REMARK 500 4 ARG A 114 152.58 -42.09 REMARK 500 4 VAL A 127 -11.33 -141.70 REMARK 500 5 GLN A 4 24.18 -145.96 REMARK 500 5 HIS A 15 -9.00 -153.84 REMARK 500 5 ASN A 19 50.83 -143.36 REMARK 500 5 CYS A 55 5.16 -63.32 REMARK 500 REMARK 500 THIS ENTRY HAS 204 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 1 PRO A 2 2 148.19 REMARK 500 LEU A 18 ASN A 19 4 146.02 REMARK 500 HIS A 64 ASN A 65 4 -142.26 REMARK 500 PHE A 5 THR A 6 5 145.33 REMARK 500 ALA A 99 ASP A 100 5 -149.97 REMARK 500 PHE A 5 THR A 6 8 148.03 REMARK 500 PHE A 5 THR A 6 9 148.89 REMARK 500 GLN A 14 HIS A 15 10 -145.38 REMARK 500 PRO A 2 PRO A 3 11 -144.93 REMARK 500 VAL A 78 PRO A 79 11 149.24 REMARK 500 ARG A 114 ASP A 115 11 148.67 REMARK 500 THR A 6 ARG A 7 12 148.58 REMARK 500 PHE A 5 THR A 6 13 146.48 REMARK 500 HIS A 64 ASN A 65 13 -145.90 REMARK 500 LEU A 129 ASP A 130 13 144.63 REMARK 500 CYS A 83 ASP A 84 17 -145.28 REMARK 500 PRO A 21 ARG A 22 19 146.69 REMARK 500 CYS A 83 ASP A 84 19 -143.11 REMARK 500 ARG A 114 ASP A 115 19 149.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 PHE A 11 0.07 SIDE CHAIN REMARK 500 1 ARG A 34 0.10 SIDE CHAIN REMARK 500 1 ARG A 66 0.10 SIDE CHAIN REMARK 500 1 ARG A 75 0.11 SIDE CHAIN REMARK 500 1 HIS A 82 0.07 SIDE CHAIN REMARK 500 1 PHE A 106 0.10 SIDE CHAIN REMARK 500 1 ARG A 114 0.09 SIDE CHAIN REMARK 500 2 PHE A 11 0.09 SIDE CHAIN REMARK 500 2 ARG A 22 0.14 SIDE CHAIN REMARK 500 2 ARG A 28 0.12 SIDE CHAIN REMARK 500 2 ARG A 66 0.08 SIDE CHAIN REMARK 500 2 TYR A 98 0.08 SIDE CHAIN REMARK 500 2 TYR A 107 0.07 SIDE CHAIN REMARK 500 3 PHE A 5 0.09 SIDE CHAIN REMARK 500 3 TYR A 33 0.10 SIDE CHAIN REMARK 500 3 ARG A 45 0.09 SIDE CHAIN REMARK 500 3 TYR A 107 0.11 SIDE CHAIN REMARK 500 3 ARG A 121 0.09 SIDE CHAIN REMARK 500 4 PHE A 5 0.11 SIDE CHAIN REMARK 500 4 TYR A 98 0.11 SIDE CHAIN REMARK 500 4 ARG A 117 0.11 SIDE CHAIN REMARK 500 4 ARG A 121 0.10 SIDE CHAIN REMARK 500 5 ARG A 104 0.08 SIDE CHAIN REMARK 500 5 TYR A 107 0.11 SIDE CHAIN REMARK 500 5 TYR A 122 0.07 SIDE CHAIN REMARK 500 6 ARG A 1 0.08 SIDE CHAIN REMARK 500 6 ARG A 105 0.14 SIDE CHAIN REMARK 500 6 TYR A 107 0.08 SIDE CHAIN REMARK 500 7 PHE A 5 0.08 SIDE CHAIN REMARK 500 7 TYR A 33 0.09 SIDE CHAIN REMARK 500 7 ARG A 66 0.11 SIDE CHAIN REMARK 500 7 ARG A 75 0.11 SIDE CHAIN REMARK 500 7 PHE A 76 0.08 SIDE CHAIN REMARK 500 7 ARG A 104 0.08 SIDE CHAIN REMARK 500 7 PHE A 106 0.08 SIDE CHAIN REMARK 500 8 ARG A 34 0.07 SIDE CHAIN REMARK 500 8 ARG A 36 0.08 SIDE CHAIN REMARK 500 8 ARG A 73 0.10 SIDE CHAIN REMARK 500 8 ARG A 105 0.10 SIDE CHAIN REMARK 500 8 TYR A 107 0.07 SIDE CHAIN REMARK 500 8 TYR A 122 0.09 SIDE CHAIN REMARK 500 9 ARG A 66 0.08 SIDE CHAIN REMARK 500 9 ASN A 70 0.07 SIDE CHAIN REMARK 500 9 ARG A 105 0.08 SIDE CHAIN REMARK 500 9 ARG A 114 0.11 SIDE CHAIN REMARK 500 10 ARG A 22 0.09 SIDE CHAIN REMARK 500 10 TYR A 33 0.09 SIDE CHAIN REMARK 500 10 ARG A 77 0.10 SIDE CHAIN REMARK 500 10 ARG A 101 0.14 SIDE CHAIN REMARK 500 10 TYR A 107 0.16 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 90 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ALA A 29 -10.26 REMARK 500 3 ARG A 34 -10.40 REMARK 500 7 PHE A 43 10.41 REMARK 500 7 GLN A 91 -10.59 REMARK 500 8 ARG A 36 -10.28 REMARK 500 9 GLN A 14 12.55 REMARK 500 10 ILE A 13 -10.16 REMARK 500 10 TYR A 122 -10.00 REMARK 500 14 LEU A 18 -10.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18596 RELATED DB: BMRB DBREF 2LVZ A 1 133 UNP P12724 ECP_HUMAN 28 160 SEQADV 2LVZ ARG A 97 UNP P12724 THR 124 CONFLICT SEQRES 1 A 133 ARG PRO PRO GLN PHE THR ARG ALA GLN TRP PHE ALA ILE SEQRES 2 A 133 GLN HIS ILE SER LEU ASN PRO PRO ARG CYS THR ILE ALA SEQRES 3 A 133 MET ARG ALA ILE ASN ASN TYR ARG TRP ARG CYS LYS ASN SEQRES 4 A 133 GLN ASN THR PHE LEU ARG THR THR PHE ALA ASN VAL VAL SEQRES 5 A 133 ASN VAL CYS GLY ASN GLN SER ILE ARG CYS PRO HIS ASN SEQRES 6 A 133 ARG THR LEU ASN ASN CYS HIS ARG SER ARG PHE ARG VAL SEQRES 7 A 133 PRO LEU LEU HIS CYS ASP LEU ILE ASN PRO GLY ALA GLN SEQRES 8 A 133 ASN ILE SER ASN CYS ARG TYR ALA ASP ARG PRO GLY ARG SEQRES 9 A 133 ARG PHE TYR VAL VAL ALA CYS ASP ASN ARG ASP PRO ARG SEQRES 10 A 133 ASP SER PRO ARG TYR PRO VAL VAL PRO VAL HIS LEU ASP SEQRES 11 A 133 THR THR ILE HET LVZ B 1 39 HET IDS B 2 22 HET SGN B 3 29 HETNAM LVZ PROPAN-2-YL 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETNAM 2 LVZ GLUCOPYRANOSIDE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID FORMUL 2 LVZ C9 H19 N O11 S2 FORMUL 2 IDS C6 H10 O10 S FORMUL 2 SGN C6 H13 N O11 S2 HELIX 1 1 THR A 6 ILE A 16 1 11 HELIX 2 2 ARG A 22 MET A 27 1 6 HELIX 3 3 ARG A 28 ILE A 30 5 3 HELIX 4 4 THR A 47 CYS A 55 1 9 SHEET 1 A 3 GLN A 40 LEU A 44 0 SHEET 2 A 3 VAL A 78 LEU A 85 -1 O LEU A 81 N PHE A 43 SHEET 3 A 3 TYR A 98 ARG A 105 -1 O GLY A 103 N LEU A 80 SHEET 1 B 3 HIS A 72 ARG A 73 0 SHEET 2 B 3 TYR A 107 ASN A 113 -1 O VAL A 109 N HIS A 72 SHEET 3 B 3 VAL A 124 THR A 132 -1 O VAL A 125 N ASP A 112 SSBOND 1 CYS A 23 CYS A 83 1555 1555 2.09 SSBOND 2 CYS A 37 CYS A 96 1555 1555 2.08 SSBOND 3 CYS A 55 CYS A 111 1555 1555 1.99 SSBOND 4 CYS A 62 CYS A 71 1555 1555 2.06 LINK O4 LVZ B 1 C1 IDS B 2 1555 1555 1.52 LINK O4 IDS B 2 C1 SGN B 3 1555 1555 1.47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1