HEADER APOPTOSIS 23-JUL-12 2LW6 TITLE SOLUTION STRUCTURE OF AN AVIRULENCE PROTEIN AVRPIZ-T FROM PATHOGEN TITLE 2 MAGNAPORTHEORYZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVRPIZ-T PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 19-98; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE; SOURCE 3 ORGANISM_COMMON: RICE BLAST FUNGUS; SOURCE 4 ORGANISM_TAXID: 318829; SOURCE 5 GENE: 7BG7.13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPSUMO KEYWDS AVRPIZ-T, PLANT RESISTANCE GENE, AVIRULENCE PROTEIN, PROTEIN KEYWDS 2 DEGRADATION, APOPTOSIS EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.-M.ZHANG,X.ZHANG,Z.ZHOU,H.HU,M.LIU,B.ZHOU,J.ZHOU REVDAT 3 16-OCT-24 2LW6 1 REMARK REVDAT 2 13-MAR-13 2LW6 1 JRNL REVDAT 1 12-SEP-12 2LW6 0 JRNL AUTH Z.-M.ZHANG,X.ZHANG,Z.R.ZHOU,H.Y.HU,M.LIU,B.ZHOU,J.ZHOU JRNL TITL SOLUTION STRUCTURE OF THE MAGNAPORTHE ORYZAE AVIRULENCE JRNL TITL 2 PROTEIN AVRPIZ-T. JRNL REF J.BIOMOL.NMR V. 55 219 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 23334361 JRNL DOI 10.1007/S10858-012-9695-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102907. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 50; NULL REMARK 210 PRESSURE : AMBIENT; NULL REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 13C; U-100% 15N] REMARK 210 H2O-1, 90% H2O/10% D2O; 0.3 MM REMARK 210 [U-99% 15N] D2O-2, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HN(CO)CA; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-13C NOESY; 3D HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB2 TYR A 29 HB2 TRP A 34 1.26 REMARK 500 HD22 ASN A 24 HB3 ASP A 89 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 30 99.44 -47.42 REMARK 500 1 ALA A 60 134.87 -170.10 REMARK 500 1 VAL A 68 -74.57 -105.04 REMARK 500 1 ASN A 71 -84.20 -132.54 REMARK 500 1 ALA A 79 67.89 -105.22 REMARK 500 1 ALA A 80 -91.17 61.80 REMARK 500 1 THR A 86 -165.68 -160.16 REMARK 500 1 THR A 88 -153.21 -140.01 REMARK 500 1 ASP A 89 -76.49 61.34 REMARK 500 1 SER A 93 114.43 66.35 REMARK 500 2 ASN A 30 104.96 -53.07 REMARK 500 2 HIS A 33 131.37 -36.30 REMARK 500 2 ALA A 60 146.68 178.91 REMARK 500 2 VAL A 68 -70.38 -122.99 REMARK 500 2 ASN A 71 -81.55 -124.16 REMARK 500 2 ALA A 80 -88.16 62.54 REMARK 500 2 THR A 88 -159.32 -141.27 REMARK 500 2 ASP A 89 -82.14 63.06 REMARK 500 2 SER A 92 -76.99 -73.38 REMARK 500 2 SER A 93 -61.10 -152.57 REMARK 500 2 THR A 95 -87.31 -141.10 REMARK 500 2 VAL A 96 -15.83 174.12 REMARK 500 3 ASN A 30 100.38 -53.38 REMARK 500 3 ALA A 60 138.29 -176.63 REMARK 500 3 VAL A 68 -72.44 -112.42 REMARK 500 3 ASN A 71 -81.46 -132.10 REMARK 500 3 ALA A 80 -91.94 61.47 REMARK 500 3 THR A 88 -154.73 -138.34 REMARK 500 3 ASP A 89 -78.72 63.58 REMARK 500 3 SER A 93 90.38 60.54 REMARK 500 4 ASN A 30 100.15 -58.75 REMARK 500 4 ALA A 60 136.21 -173.39 REMARK 500 4 VAL A 68 -78.80 -128.01 REMARK 500 4 ASN A 71 -76.26 -133.49 REMARK 500 4 ALA A 79 60.19 -109.38 REMARK 500 4 ALA A 80 -90.08 58.39 REMARK 500 4 THR A 88 -154.84 -140.70 REMARK 500 4 ASP A 89 -78.10 69.90 REMARK 500 4 SER A 92 -76.77 -94.73 REMARK 500 4 SER A 93 -54.54 -158.40 REMARK 500 4 THR A 95 21.77 -140.04 REMARK 500 4 VAL A 96 -72.52 68.48 REMARK 500 5 ASN A 30 101.23 -50.43 REMARK 500 5 ALA A 60 138.70 -173.57 REMARK 500 5 VAL A 68 -79.51 -115.20 REMARK 500 5 ASN A 71 -85.52 -124.22 REMARK 500 5 ASN A 77 71.59 59.83 REMARK 500 5 ALA A 80 -93.38 59.62 REMARK 500 5 THR A 88 -158.45 -131.64 REMARK 500 5 ASP A 89 -85.04 70.83 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18607 RELATED DB: BMRB DBREF 2LW6 A 19 98 UNP H2DQR0 H2DQR0_MAGOR 19 98 SEQRES 1 A 80 SER PHE VAL GLN CYS ASN HIS HIS LEU LEU TYR ASN GLY SEQRES 2 A 80 ARG HIS TRP GLY THR ILE ARG LYS LYS ALA GLY TRP ALA SEQRES 3 A 80 VAL ARG PHE TYR GLU GLU LYS PRO GLY GLN PRO LYS ARG SEQRES 4 A 80 LEU VAL ALA ILE CYS LYS ASN ALA SER PRO VAL HIS CYS SEQRES 5 A 80 ASN TYR LEU LYS CYS THR ASN LEU ALA ALA GLY PHE SER SEQRES 6 A 80 ALA GLY THR SER THR ASP VAL LEU SER SER GLY THR VAL SEQRES 7 A 80 GLY SER SHEET 1 A 3 ARG A 32 LYS A 40 0 SHEET 2 A 3 GLN A 22 TYR A 29 -1 N LEU A 27 O GLY A 35 SHEET 3 A 3 SER A 83 ALA A 84 -1 O SER A 83 N LEU A 28 SHEET 1 B 3 VAL A 45 GLU A 49 0 SHEET 2 B 3 ARG A 57 ASN A 64 -1 O CYS A 62 N VAL A 45 SHEET 3 B 3 LEU A 73 THR A 76 -1 O LYS A 74 N LYS A 63 SSBOND 1 CYS A 62 CYS A 75 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1