HEADER HYDROLASE 28-JUL-12 2LWF TITLE STRUCTURE OF N-TERMINAL DOMAIN OF A PLANT GRX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOTHIOL GLUTAREDOXIN-S16, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN; COMPND 5 SYNONYM: ATGRXS16, CAXIP1-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS,THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GRXS16, AT2G38270, F16M14.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS NUCLEASE, GLUTAREDOXIN, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.FENG REVDAT 6 15-MAY-24 2LWF 1 REMARK REVDAT 5 14-JUN-23 2LWF 1 REMARK SEQADV REVDAT 4 26-JUN-13 2LWF 1 JRNL REVDAT 3 19-JUN-13 2LWF 1 JRNL REVDAT 2 05-JUN-13 2LWF 1 JRNL REVDAT 1 22-MAY-13 2LWF 0 JRNL AUTH X.LIU,S.LIU,Y.FENG,J.Z.LIU,Y.CHEN,K.PHAM,H.DENG,K.D.HIRSCHI, JRNL AUTH 2 X.WANG,N.CHENG JRNL TITL STRUCTURAL INSIGHTS INTO THE N-TERMINAL GIY-YIG ENDONUCLEASE JRNL TITL 2 ACTIVITY OF ARABIDOPSIS GLUTAREDOXIN ATGRXS16 IN JRNL TITL 3 CHLOROPLASTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 9565 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23690600 JRNL DOI 10.1073/PNAS.1306899110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102916. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-13C; U-15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 10 MM DTT, 0.02 % DSS, 0.1 V/V REMARK 210 [U-2H] D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HNCO; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 CCH-TOCSY; 3D 1H-15N TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRVIEW, CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 64 -164.52 -167.29 REMARK 500 1 GLU A 79 54.20 -93.16 REMARK 500 1 SER A 85 39.01 -92.90 REMARK 500 1 ASP A 97 67.75 62.33 REMARK 500 1 THR A 154 -30.21 -131.70 REMARK 500 1 GLU A 174 72.56 45.70 REMARK 500 1 HIS A 175 47.33 -148.24 REMARK 500 1 HIS A 178 89.43 -176.78 REMARK 500 2 LYS A 67 -82.01 -95.39 REMARK 500 2 GLU A 79 30.58 -92.97 REMARK 500 2 SER A 85 49.51 -99.16 REMARK 500 2 ASP A 94 -167.93 -79.94 REMARK 500 2 PRO A 134 34.03 -84.84 REMARK 500 2 THR A 167 -4.85 -55.62 REMARK 500 2 THR A 172 -59.65 67.40 REMARK 500 2 GLU A 174 172.53 178.99 REMARK 500 3 GLU A 79 38.93 -94.14 REMARK 500 3 ASP A 94 -168.54 -79.52 REMARK 500 3 PRO A 134 36.24 -86.11 REMARK 500 3 SER A 163 109.78 -55.33 REMARK 500 3 VAL A 171 -136.99 -128.46 REMARK 500 4 GLU A 79 53.79 -107.96 REMARK 500 4 PRO A 120 24.64 -77.53 REMARK 500 4 PRO A 134 46.75 -76.39 REMARK 500 4 GLU A 174 -62.12 70.15 REMARK 500 4 HIS A 179 88.22 66.62 REMARK 500 5 SER A 64 -68.72 -140.84 REMARK 500 5 ALA A 65 96.52 38.84 REMARK 500 5 GLU A 79 53.68 -98.49 REMARK 500 5 SER A 85 31.68 -92.97 REMARK 500 5 CYS A 123 96.66 -67.95 REMARK 500 5 VAL A 157 77.37 -158.60 REMARK 500 5 LYS A 170 135.79 77.01 REMARK 500 5 LEU A 173 -179.78 76.07 REMARK 500 5 HIS A 176 99.15 -56.79 REMARK 500 5 HIS A 179 -70.21 -125.29 REMARK 500 6 ALA A 65 145.62 79.46 REMARK 500 6 LYS A 67 -77.48 -86.52 REMARK 500 6 GLU A 79 54.13 -96.95 REMARK 500 6 ASP A 94 -166.96 -78.64 REMARK 500 6 PRO A 120 24.47 -76.65 REMARK 500 6 VAL A 157 75.99 41.13 REMARK 500 6 LYS A 170 33.40 -87.50 REMARK 500 6 HIS A 178 179.42 76.69 REMARK 500 7 ALA A 65 -173.91 64.01 REMARK 500 7 LYS A 67 -77.49 -61.39 REMARK 500 7 GLU A 79 53.26 -112.93 REMARK 500 7 ASP A 94 -168.16 -78.64 REMARK 500 7 PRO A 120 24.13 -74.07 REMARK 500 7 PRO A 134 32.47 -82.31 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 106 0.09 SIDE CHAIN REMARK 500 10 ARG A 106 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18624 RELATED DB: BMRB DBREF 2LWF A 63 170 UNP Q8H7F6 GRS16_ARATH 63 170 SEQADV 2LWF MET A 62 UNP Q8H7F6 INITIATING METHIONINE SEQADV 2LWF VAL A 171 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF THR A 172 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF LEU A 173 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF GLU A 174 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 175 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 176 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 177 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 178 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 179 UNP Q8H7F6 EXPRESSION TAG SEQADV 2LWF HIS A 180 UNP Q8H7F6 EXPRESSION TAG SEQRES 1 A 119 MET ALA SER ALA VAL LYS SER LEU THR GLU THR GLU LEU SEQRES 2 A 119 LEU PRO ILE THR GLU ALA ASP SER ILE PRO SER ALA SER SEQRES 3 A 119 GLY VAL TYR ALA VAL TYR ASP LYS SER ASP GLU LEU GLN SEQRES 4 A 119 PHE VAL GLY ILE SER ARG ASN ILE ALA ALA SER VAL SER SEQRES 5 A 119 ALA HIS LEU LYS SER VAL PRO GLU LEU CYS GLY SER VAL SEQRES 6 A 119 LYS VAL GLY ILE VAL GLU GLU PRO ASP LYS ALA VAL LEU SEQRES 7 A 119 THR GLN ALA TRP LYS LEU TRP ILE GLU GLU HIS ILE LYS SEQRES 8 A 119 VAL THR GLY LYS VAL PRO PRO GLY ASN LYS SER GLY ASN SEQRES 9 A 119 ASN THR PHE VAL LYS VAL THR LEU GLU HIS HIS HIS HIS SEQRES 10 A 119 HIS HIS HELIX 1 1 SER A 68 THR A 72 5 5 HELIX 2 2 GLU A 79 ILE A 83 5 5 HELIX 3 3 ASN A 107 VAL A 119 1 13 HELIX 4 4 PRO A 120 CYS A 123 5 4 HELIX 5 5 ASP A 135 THR A 154 1 20 SHEET 1 A 4 GLU A 73 PRO A 76 0 SHEET 2 A 4 SER A 125 ILE A 130 -1 O VAL A 126 N LEU A 75 SHEET 3 A 4 GLY A 88 TYR A 93 -1 N VAL A 89 O GLY A 129 SHEET 4 A 4 LEU A 99 SER A 105 -1 O PHE A 101 N VAL A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1