HEADER TRANSCRIPTION 01-AUG-12 2LWJ TITLE NMR SOLUTION STRUCTURE MYXOCCOCCUS XANTHUS CDNL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CARD FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: CDNL, MXAN_2627; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CDNL, CARD, TRCF-RID, PF02559, RNA POLYMERASE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.JIMENEZ,S.PADMANABHAN,Y.MIRASSOU REVDAT 3 14-JUN-23 2LWJ 1 REMARK SEQADV REVDAT 2 15-OCT-14 2LWJ 1 JRNL REVDAT 1 05-FEB-14 2LWJ 0 JRNL AUTH A.GALLEGO-GARCIA,Y.MIRASSOU,D.GARCIA-MORENO,M.ELIAS-ARNANZ, JRNL AUTH 2 M.A.JIMENEZ,S.PADMANABHAN JRNL TITL STRUCTURAL INSIGHTS INTO RNA POLYMERASE RECOGNITION AND JRNL TITL 2 ESSENTIAL FUNCTION OF MYXOCOCCUS XANTHUS CDNL. JRNL REF PLOS ONE V. 9 08946 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25272012 JRNL DOI 10.1371/JOURNAL.PONE.0108946 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.MIRASSOU,M.ELIAS-ARNANZ,S.PADMANABHAN,M.A.JIMENEZ REMARK 1 TITL (1)H, (13)C AND (15)N ASSIGNMENTS OF CDNL, AN ESSENTIAL REMARK 1 TITL 2 PROTEIN IN MYXOCOCCUS XANTHUS. REMARK 1 REF BIOMOL.NMR ASSIGN. 2012 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 22392343 REMARK 1 DOI 10.1007/S12104-012-9375-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM REMARK 3 (AMBER), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102920. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM CDNL, 50 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.5 MM REMARK 210 DSS, 90% H2O/10% D2O; 1 MM CDNL, REMARK 210 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 2 MM BETA-MERCAPTOETHANOL, REMARK 210 0.5 MM DSS, 100% D2O; 1 MM [U- REMARK 210 100% 13C; U-100% 15N] CDNL, 50 REMARK 210 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 2 MM BETA-MERCAPTOETHANOL, REMARK 210 0.5 MM DSS, 90% H2O/10% D2O; 1 REMARK 210 MM [U-100% 13C; U-100% 15N] CDNL, REMARK 210 50 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.05 % SODIUM REMARK 210 AZIDE, 2 MM BETA-MERCAPTOETHANOL, REMARK 210 0.5 MM DSS, 100% D2O; 0.25 MM REMARK 210 CDNL, 50 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 0.05 % REMARK 210 SODIUM AZIDE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 0.1 MM DSS, 90% REMARK 210 H2O/10% D2O; 0.25 MM CDNL, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.1 MM REMARK 210 DSS, 100% D2O; 0.25 MM [U-100% REMARK 210 13C; U-100% 15N] CDNL, 50 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.05 % SODIUM AZIDE, 2 REMARK 210 MM BETA-MERCAPTOETHANOL, 0.5 MM REMARK 210 DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-15N HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 8 ARG A 115 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -72.56 -146.64 REMARK 500 1 MET A 4 51.65 -170.62 REMARK 500 1 THR A 6 -69.75 -142.60 REMARK 500 1 SER A 7 -69.86 -139.60 REMARK 500 1 GLN A 19 -71.15 -134.02 REMARK 500 1 ALA A 33 27.52 46.81 REMARK 500 1 VAL A 61 -42.41 -144.11 REMARK 500 1 SER A 85 95.99 -47.72 REMARK 500 1 ASP A 150 27.46 46.50 REMARK 500 2 THR A 6 -70.21 -134.56 REMARK 500 2 SER A 7 -71.64 -141.48 REMARK 500 2 GLN A 19 -71.61 -126.11 REMARK 500 2 MET A 25 -85.91 -120.73 REMARK 500 2 ALA A 33 27.58 49.67 REMARK 500 2 VAL A 61 -42.07 -144.15 REMARK 500 2 SER A 85 107.52 -48.22 REMARK 500 2 ASP A 150 28.38 45.28 REMARK 500 3 THR A 6 -63.76 -149.97 REMARK 500 3 SER A 7 -66.50 -150.80 REMARK 500 3 GLN A 19 -82.22 -138.41 REMARK 500 3 VAL A 61 -42.31 -143.57 REMARK 500 3 SER A 85 102.30 -44.50 REMARK 500 3 ASP A 150 30.00 42.03 REMARK 500 3 CYS A 151 -156.28 -156.68 REMARK 500 4 MET A 4 -71.39 -67.61 REMARK 500 4 SER A 7 37.72 -168.51 REMARK 500 4 GLN A 19 -81.52 -140.91 REMARK 500 4 SER A 85 103.98 -51.27 REMARK 500 5 GLN A 5 -33.74 -160.27 REMARK 500 5 THR A 6 -68.36 -125.96 REMARK 500 5 SER A 7 -67.88 -143.25 REMARK 500 5 GLN A 19 -80.72 -141.74 REMARK 500 5 VAL A 61 -42.46 -144.05 REMARK 500 5 LEU A 166 -158.47 -87.89 REMARK 500 6 GLN A 19 -78.86 -143.93 REMARK 500 6 VAL A 58 45.86 -69.24 REMARK 500 6 SER A 85 89.81 -55.04 REMARK 500 6 ASP A 150 13.86 51.44 REMARK 500 7 SER A 2 109.13 -164.01 REMARK 500 7 GLN A 5 12.51 -143.08 REMARK 500 7 PRO A 17 95.58 -68.88 REMARK 500 7 GLN A 19 -80.99 -161.60 REMARK 500 7 ASP A 150 24.13 46.06 REMARK 500 8 HIS A 3 98.66 -59.86 REMARK 500 8 MET A 4 33.74 -142.42 REMARK 500 8 THR A 6 -59.89 -150.49 REMARK 500 8 SER A 7 -72.77 -162.72 REMARK 500 8 GLN A 19 -83.77 -141.84 REMARK 500 8 THR A 30 -169.77 -122.41 REMARK 500 8 VAL A 58 71.82 -61.50 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 76 0.12 SIDE CHAIN REMARK 500 4 TYR A 76 0.08 SIDE CHAIN REMARK 500 9 TYR A 76 0.13 SIDE CHAIN REMARK 500 11 TYR A 76 0.12 SIDE CHAIN REMARK 500 11 TYR A 98 0.07 SIDE CHAIN REMARK 500 13 TYR A 98 0.08 SIDE CHAIN REMARK 500 16 TYR A 98 0.07 SIDE CHAIN REMARK 500 17 TYR A 98 0.07 SIDE CHAIN REMARK 500 20 TYR A 98 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18121 RELATED DB: BMRB REMARK 900 CDNL N-TERMINAL DOMAIN 1-68 RESIDUES REMARK 900 RELATED ID: 15977 RELATED DB: BMRB REMARK 900 CDNL C-TERMINAL DOMAIN 55-164 RESIDUES REMARK 900 RELATED ID: 18151 RELATED DB: BMRB REMARK 900 FULL LENGTH CDNL DBREF 2LWJ A 4 167 UNP Q1D927 Q1D927_MYXXD 1 164 SEQADV 2LWJ GLY A 1 UNP Q1D927 EXPRESSION TAG SEQADV 2LWJ SER A 2 UNP Q1D927 EXPRESSION TAG SEQADV 2LWJ HIS A 3 UNP Q1D927 EXPRESSION TAG SEQRES 1 A 167 GLY SER HIS MET GLN THR SER PHE LYS THR GLY ASP LYS SEQRES 2 A 167 ALA VAL TYR PRO GLY GLN GLY VAL GLY GLU VAL MET GLY SEQRES 3 A 167 ILE GLU HIS THR GLU VAL ALA GLY GLN ARG GLN SER PHE SEQRES 4 A 167 TYR VAL LEU ARG ILE LEU GLU ASN GLY MET ARG ILE MET SEQRES 5 A 167 ILE PRO ILE ASN LYS VAL GLY SER VAL GLY LEU ARG GLU SEQRES 6 A 167 ILE ILE SER GLU GLU ASP VAL LYS GLN VAL TYR SER ILE SEQRES 7 A 167 LEU LYS GLU LYS ASP ILE SER VAL ASP SER THR THR TRP SEQRES 8 A 167 ASN ARG ARG TYR ARG GLU TYR MET GLU LYS ILE LYS THR SEQRES 9 A 167 GLY SER VAL PHE GLU ILE ALA GLU VAL LEU ARG ASP LEU SEQRES 10 A 167 TYR LEU LEU LYS GLY ASP LYS ASP LEU SER PHE GLY GLU SEQRES 11 A 167 ARG LYS MET LEU ASP THR ALA ARG SER LEU LEU ILE LYS SEQRES 12 A 167 GLU LEU SER LEU ALA LYS ASP CYS SER GLU ASP GLU ILE SEQRES 13 A 167 GLU SER ASP LEU LYS LYS ILE PHE ASN LEU ALA HELIX 1 1 SER A 68 LYS A 80 1 13 HELIX 2 2 GLU A 81 SER A 85 5 5 HELIX 3 3 ASP A 87 GLY A 105 1 19 HELIX 4 4 SER A 106 GLY A 122 1 17 HELIX 5 5 SER A 127 LEU A 145 1 19 HELIX 6 6 LEU A 145 ASP A 150 1 6 HELIX 7 7 GLU A 153 PHE A 164 1 12 SHEET 1 A 3 GLU A 23 VAL A 32 0 SHEET 2 A 3 GLN A 35 ARG A 43 -1 O VAL A 41 N MET A 25 SHEET 3 A 3 ARG A 50 PRO A 54 -1 O ILE A 51 N LEU A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1