HEADER PROTEIN BINDING 04-SEP-12 2LXX TITLE SOLUTION STRUCTURE OF COFILIN LIKE UNC-60B PROTEIN FROM CAENORHABDITIS TITLE 2 ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN-DEPOLYMERIZING FACTOR 2, ISOFORM C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UNCOORDINATED PROTEIN 60; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: UNC-60, C38C3.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETNH6 KEYWDS ADF/COFILIN FOLD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR V.SHUKLA,R.YADAV,A.KABRA,A.JAIN,D.KUMAR,S.ONO,A.ARORA REVDAT 3 14-JUN-23 2LXX 1 REMARK REVDAT 2 21-DEC-16 2LXX 1 TITLE REVDAT 1 09-OCT-13 2LXX 0 JRNL AUTH V.SHUKLA,R.YADAV,A.KABRA,A.JAIN,D.KUMAR,S.ONO,A.ARORA JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF UNC-60B FROM JRNL TITL 2 CAENORHABDITIS ELEGANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102970. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE-1, 50 MM REMARK 210 SODIUM CHLORIDE-2, 0.1 % SODIUM REMARK 210 AZIDE-3, 0.9 MM [U-99% 15N] UNC- REMARK 210 60B-4, 93% H2O/7% D2O; 20 MM REMARK 210 SODIUM PHOSPHATE-5, 50 MM SODIUM REMARK 210 CHLORIDE-6, 0.1 % SODIUM AZIDE-7, REMARK 210 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 UNC-60B-8, 93% H2O/7% D2O; 20 MM REMARK 210 SODIUM PHOSPHATE-9, 50 MM SODIUM REMARK 210 CHLORIDE-10, 0.1 % SODIUM AZIDE- REMARK 210 11, 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 UNC-60B-12, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D H(CCO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO-NOESY; 3D HN(CA)CO; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 HCCH-TOCSY; CB(CGCD)HD; REMARK 210 CB(CGCDCE)HE; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4, CYANA 3.0, PSVS REMARK 210 METHOD USED : WATER REFINEMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 19 OD1 ASP A 73 1.56 REMARK 500 O VAL A 78 H SER A 87 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 25 -61.63 -105.46 REMARK 500 1 LYS A 33 163.32 57.07 REMARK 500 1 THR A 36 92.24 55.30 REMARK 500 1 ARG A 80 -151.13 -156.87 REMARK 500 1 CYS A 98 117.58 -162.55 REMARK 500 2 ALA A 2 -161.06 -164.50 REMARK 500 2 ASN A 20 -64.47 -108.29 REMARK 500 2 HIS A 22 42.68 70.56 REMARK 500 2 SER A 25 -64.05 -127.67 REMARK 500 2 LYS A 33 157.15 167.03 REMARK 500 2 THR A 36 95.58 68.96 REMARK 500 2 ASN A 47 68.71 -100.58 REMARK 500 2 CYS A 98 117.88 -168.37 REMARK 500 2 ARG A 151 98.32 -160.53 REMARK 500 3 ALA A 2 -97.44 -169.72 REMARK 500 3 ASN A 20 -68.14 -95.41 REMARK 500 3 LYS A 33 158.75 54.06 REMARK 500 3 THR A 36 86.22 50.40 REMARK 500 3 LYS A 65 54.35 -99.96 REMARK 500 3 SER A 141 -61.04 -106.84 REMARK 500 3 ARG A 151 23.69 -155.40 REMARK 500 4 SER A 3 -71.11 -164.43 REMARK 500 4 ASP A 32 -168.43 -129.84 REMARK 500 4 LYS A 33 125.30 69.46 REMARK 500 4 THR A 36 101.10 56.91 REMARK 500 4 ARG A 68 148.08 -172.55 REMARK 500 4 CYS A 98 112.27 -170.18 REMARK 500 4 SER A 132 -61.61 -93.84 REMARK 500 4 GLN A 150 -89.51 38.54 REMARK 500 5 HIS A 22 36.55 73.60 REMARK 500 5 LYS A 33 154.89 64.75 REMARK 500 5 THR A 36 120.88 59.52 REMARK 500 5 ALA A 37 118.19 -160.31 REMARK 500 5 THR A 86 94.30 -67.91 REMARK 500 5 CYS A 98 107.89 -165.38 REMARK 500 5 LEU A 126 -168.20 -108.43 REMARK 500 5 SER A 141 -60.23 -108.75 REMARK 500 6 ALA A 2 -73.89 -154.18 REMARK 500 6 SER A 3 -159.14 -149.70 REMARK 500 6 ASP A 32 -167.30 -125.22 REMARK 500 6 LYS A 33 130.72 69.47 REMARK 500 6 THR A 36 108.84 59.69 REMARK 500 6 CYS A 98 120.01 -172.06 REMARK 500 6 SER A 132 -81.76 -84.59 REMARK 500 6 GLU A 133 -168.24 -122.38 REMARK 500 6 SER A 141 -60.03 -109.30 REMARK 500 7 ALA A 2 -155.83 -159.71 REMARK 500 7 LYS A 33 148.32 55.22 REMARK 500 7 THR A 36 86.11 54.20 REMARK 500 7 ARG A 151 91.27 -164.44 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LRB RELATED DB: PDB REMARK 900 RELATED ID: 2L72 RELATED DB: PDB REMARK 900 RELATED ID: 18701 RELATED DB: BMRB DBREF 2LXX A 1 152 UNP Q07749 ADF2_CAEEL 1 152 SEQRES 1 A 152 MET ALA SER GLY VAL LYS VAL ASP PRO SER CYS LYS ASN SEQRES 2 A 152 ALA TYR ASP LEU LEU HIS ASN LYS HIS GLN HIS SER TYR SEQRES 3 A 152 ILE ILE PHE LYS ILE ASP LYS ASN ASP THR ALA ILE VAL SEQRES 4 A 152 VAL GLU LYS VAL GLY GLU LYS ASN ALA PRO TYR ALA GLU SEQRES 5 A 152 PHE VAL GLU GLU MET LYS LYS LEU VAL GLU ASP GLY LYS SEQRES 6 A 152 GLU CYS ARG TYR ALA ALA VAL ASP VAL GLU VAL THR VAL SEQRES 7 A 152 GLN ARG GLN GLY ALA GLU GLY THR SER THR LEU ASN LYS SEQRES 8 A 152 VAL ILE PHE VAL GLN TYR CYS PRO ASP ASN ALA PRO VAL SEQRES 9 A 152 ARG ARG ARG MET LEU TYR ALA SER SER VAL ARG ALA LEU SEQRES 10 A 152 LYS ALA SER LEU GLY LEU GLU SER LEU PHE GLN VAL GLN SEQRES 11 A 152 ALA SER GLU MET SER ASP LEU ASP GLU LYS SER VAL LYS SEQRES 12 A 152 SER ASP LEU MET SER ASN GLN ARG ILE HELIX 1 1 ASP A 8 ASN A 20 1 13 HELIX 2 2 PRO A 49 GLU A 62 1 14 HELIX 3 3 PRO A 103 LEU A 121 1 19 HELIX 4 4 ASP A 138 ASN A 149 1 12 SHEET 1 A 6 LYS A 6 VAL A 7 0 SHEET 2 A 6 ALA A 37 GLU A 45 1 O ILE A 38 N LYS A 6 SHEET 3 A 6 HIS A 24 ASP A 32 -1 N ILE A 28 O GLU A 41 SHEET 4 A 6 ARG A 68 VAL A 78 -1 O TYR A 69 N PHE A 29 SHEET 5 A 6 SER A 87 TYR A 97 -1 O SER A 87 N VAL A 78 SHEET 6 A 6 GLN A 128 ALA A 131 1 O VAL A 129 N PHE A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1