HEADER SPLICING, TRANSPORT PROTEIN 19-SEP-12 2LYV TITLE SOLUTION STRUCTURE OF THE TWO RRM DOMAINS OF HNRNP A1 (UP1) USING TITLE 2 SEGMENTAL ISOTOPE LABELING COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAINS 1 AND 2; COMPND 5 SYNONYM: HNRNP A1, HELIX-DESTABILIZING PROTEIN, SINGLE-STRAND RNA- COMPND 6 BINDING PROTEIN, HNRNP CORE PROTEIN A1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRNPA1, HNRPA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS SPLICING, UP1, HNRNP A1, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BARRAUD,F.H.-T.ALLAIN REVDAT 4 14-JUN-23 2LYV 1 REMARK SEQADV REVDAT 3 20-FEB-13 2LYV 1 JRNL REVDAT 2 30-JAN-13 2LYV 1 JRNL REVDAT 1 26-DEC-12 2LYV 0 JRNL AUTH P.BARRAUD,F.H.ALLAIN JRNL TITL SOLUTION STRUCTURE OF THE TWO RNA RECOGNITION MOTIFS OF JRNL TITL 2 HNRNP A1 USING SEGMENTAL ISOTOPE LABELING: HOW THE RELATIVE JRNL TITL 3 ORIENTATION BETWEEN RRMS INFLUENCES THE NUCLEIC ACID BINDING JRNL TITL 4 TOPOLOGY. JRNL REF J.BIOMOL.NMR V. 55 119 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 23247503 JRNL DOI 10.1007/S10858-012-9696-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CNS 1.3 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000103000. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM RRM1[U-13C, U-15N] REMARK 210 -RRM2[NATURAL ABUNDANCE] UP1, 10 REMARK 210 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 100% D2O; 0.8-1.2 MM [U-15N] UP1, REMARK 210 10 MM SODIUM PHOSPHATE, 1 MM REMARK 210 DTT, 90% H2O/10% D2O; 0.8-1.2 MM REMARK 210 [U-15N] UP1, 10 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 100% D2O; REMARK 210 0.8-1.2 MM [U-13C; U-15N] UP1, REMARK 210 10 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D H(CCO)NH; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 2D 1H-1H NOESY; 2D 1H- REMARK 210 1H TOCSY; 2D 1H-15N IPAP HSQC; REMARK 210 2D LONG-RANGE 1H-15N HSQC; 3D REMARK 210 13C F1-EDITED F3-FILTERED NOESY- REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 750 REMARK 210 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, SPARKY, CYANA 3.0, REMARK 210 TALOS TALOS+, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 87.24 64.65 REMARK 500 1 ALA A 89 93.01 -68.57 REMARK 500 2 GLU A 114 -97.28 -104.89 REMARK 500 3 LYS A 3 -37.02 -139.81 REMARK 500 3 ALA A 89 94.70 -59.54 REMARK 500 3 MET A 186 -70.93 -85.47 REMARK 500 4 ALA A 89 98.54 -65.28 REMARK 500 4 MET A 186 -70.15 -79.59 REMARK 500 4 ALA A 187 -62.16 -94.10 REMARK 500 4 ALA A 189 97.44 -60.94 REMARK 500 5 ALA A 89 93.29 -64.33 REMARK 500 5 GLU A 114 -162.52 -126.47 REMARK 500 6 SER A 6 79.02 57.67 REMARK 500 6 SER A 192 60.83 -116.10 REMARK 500 7 ALA A 89 96.62 -67.61 REMARK 500 7 ASP A 115 101.48 -55.42 REMARK 500 8 SER A 2 76.69 56.74 REMARK 500 8 ALA A 89 93.58 -69.68 REMARK 500 9 ALA A 89 96.36 -64.09 REMARK 500 9 ARG A 194 37.13 -143.56 REMARK 500 10 ALA A 89 97.15 -66.77 REMARK 500 11 ARG A 146 -179.14 -179.53 REMARK 500 12 ALA A 89 95.47 -68.32 REMARK 500 12 GLU A 114 -53.20 73.27 REMARK 500 12 ASP A 115 112.60 -165.46 REMARK 500 12 PHE A 148 145.87 -171.54 REMARK 500 13 ASP A 115 99.94 -66.71 REMARK 500 13 SER A 188 -43.84 71.76 REMARK 500 13 GLN A 193 -57.43 -141.44 REMARK 500 14 LYS A 3 -72.89 -148.09 REMARK 500 14 ALA A 89 99.78 -70.00 REMARK 500 15 THR A 103 58.87 -91.55 REMARK 500 15 ASP A 115 99.11 -61.42 REMARK 500 16 SER A 2 70.34 57.59 REMARK 500 16 ASP A 115 104.84 -58.97 REMARK 500 16 MET A 186 -71.78 -89.55 REMARK 500 16 ALA A 187 -63.12 -96.02 REMARK 500 16 SER A 188 171.83 179.21 REMARK 500 16 SER A 190 98.26 -64.39 REMARK 500 17 GLN A 193 -71.93 -73.54 REMARK 500 19 SER A 2 -40.83 74.68 REMARK 500 19 GLU A 5 78.88 60.10 REMARK 500 20 SER A 6 124.78 70.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UP1 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE AT 1.90 A RESOLUTION REMARK 900 RELATED ID: 1HA1 RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE AT 1.75 A RESOLUTION REMARK 900 RELATED ID: 1L3K RELATED DB: PDB REMARK 900 X-RAY CRYSTAL STRUCTURE AT 1.10 A RESOLUTION REMARK 900 RELATED ID: 18728 RELATED DB: BMRB DBREF 2LYV A 2 196 UNP P09651 ROA1_HUMAN 2 196 SEQADV 2LYV GLY A 0 UNP P09651 EXPRESSION TAG SEQADV 2LYV GLY A 1 UNP P09651 EXPRESSION TAG SEQRES 1 A 197 GLY GLY SER LYS SER GLU SER PRO LYS GLU PRO GLU GLN SEQRES 2 A 197 LEU ARG LYS LEU PHE ILE GLY GLY LEU SER PHE GLU THR SEQRES 3 A 197 THR ASP GLU SER LEU ARG SER HIS PHE GLU GLN TRP GLY SEQRES 4 A 197 THR LEU THR ASP CYS VAL VAL MET ARG ASP PRO ASN THR SEQRES 5 A 197 LYS ARG SER ARG GLY PHE GLY PHE VAL THR TYR ALA THR SEQRES 6 A 197 VAL GLU GLU VAL ASP ALA ALA MET ASN ALA ARG PRO HIS SEQRES 7 A 197 LYS VAL ASP GLY ARG VAL VAL GLU PRO LYS ARG ALA VAL SEQRES 8 A 197 SER ARG GLU ASP SER GLN ARG PRO GLY ALA HIS LEU THR SEQRES 9 A 197 VAL LYS LYS ILE PHE VAL GLY GLY ILE LYS GLU ASP THR SEQRES 10 A 197 GLU GLU HIS HIS LEU ARG ASP TYR PHE GLU GLN TYR GLY SEQRES 11 A 197 LYS ILE GLU VAL ILE GLU ILE MET THR ASP ARG GLY SER SEQRES 12 A 197 GLY LYS LYS ARG GLY PHE ALA PHE VAL THR PHE ASP ASP SEQRES 13 A 197 HIS ASP SER VAL ASP LYS ILE VAL ILE GLN LYS TYR HIS SEQRES 14 A 197 THR VAL ASN GLY HIS ASN CYS GLU VAL ARG LYS ALA LEU SEQRES 15 A 197 SER LYS GLN GLU MET ALA SER ALA SER SER SER GLN ARG SEQRES 16 A 197 GLY ARG HELIX 1 1 PRO A 10 ARG A 14 1 5 HELIX 2 2 THR A 26 GLU A 35 1 10 HELIX 3 3 THR A 64 ALA A 74 1 11 HELIX 4 4 GLU A 117 GLU A 126 1 10 HELIX 5 5 ASP A 155 ILE A 164 1 10 HELIX 6 6 SER A 182 SER A 188 1 7 SHEET 1 A 5 LEU A 40 ARG A 47 0 SHEET 2 A 5 SER A 54 TYR A 62 -1 O THR A 61 N ASP A 42 SHEET 3 A 5 LYS A 15 GLY A 19 -1 N LEU A 16 O VAL A 60 SHEET 4 A 5 ARG A 82 ARG A 88 -1 O GLU A 85 N GLY A 19 SHEET 5 A 5 HIS A 77 VAL A 79 -1 N HIS A 77 O VAL A 84 SHEET 1 B 5 ILE A 131 ILE A 136 0 SHEET 2 B 5 PHE A 148 PHE A 153 -1 O PHE A 150 N GLU A 135 SHEET 3 B 5 LYS A 106 GLY A 110 -1 N VAL A 109 O ALA A 149 SHEET 4 B 5 HIS A 173 LYS A 179 -1 O GLU A 176 N GLY A 110 SHEET 5 B 5 TYR A 167 VAL A 170 -1 N VAL A 170 O HIS A 173 CISPEP 1 ARG A 75 PRO A 76 1 2.32 CISPEP 2 ARG A 75 PRO A 76 2 2.00 CISPEP 3 ARG A 75 PRO A 76 3 1.94 CISPEP 4 ARG A 75 PRO A 76 4 0.97 CISPEP 5 ARG A 75 PRO A 76 5 2.16 CISPEP 6 ARG A 75 PRO A 76 6 3.80 CISPEP 7 ARG A 75 PRO A 76 7 0.46 CISPEP 8 ARG A 75 PRO A 76 8 1.60 CISPEP 9 ARG A 75 PRO A 76 9 4.45 CISPEP 10 ARG A 75 PRO A 76 10 -2.33 CISPEP 11 ARG A 75 PRO A 76 11 2.35 CISPEP 12 ARG A 75 PRO A 76 12 3.35 CISPEP 13 ARG A 75 PRO A 76 13 3.17 CISPEP 14 ARG A 75 PRO A 76 14 2.18 CISPEP 15 ARG A 75 PRO A 76 15 3.44 CISPEP 16 ARG A 75 PRO A 76 16 1.71 CISPEP 17 ARG A 75 PRO A 76 17 2.80 CISPEP 18 ARG A 75 PRO A 76 18 2.77 CISPEP 19 ARG A 75 PRO A 76 19 4.29 CISPEP 20 ARG A 75 PRO A 76 20 2.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1