HEADER PROTEIN BINDING 02-OCT-12 2LZG TITLE NMR STRUCTURE OF MDM2 (6-125) WITH PIP-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE MDM2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DOUBLE MINUTE 2 PROTEIN, HDM2, ONCOPROTEIN MDM2, P53-BINDING COMPND 5 PROTEIN MDM2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MDM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MDM2, ONCOGENE PROTEIN-INHIBITOR COMPLEX, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR K.B.MICHELSEN,J.B.JORDAN,J.LEWIS,A.M.LONG,E.YANG,Y.REW,J.ZHOU, AUTHOR 2 P.YAKOWEC,P.D.SCHNIER,X.HUANG,L.POPPE REVDAT 2 01-MAY-24 2LZG 1 REMARK REVDAT 1 07-NOV-12 2LZG 0 JRNL AUTH K.MICHELSEN,J.B.JORDAN,J.LEWIS,A.M.LONG,E.YANG,Y.REW,J.ZHOU, JRNL AUTH 2 P.YAKOWEC,P.D.SCHNIER,X.HUANG,L.POPPE JRNL TITL ORDERING OF THE N-TERMINUS OF HUMAN MDM2 BY SMALL MOLECULE JRNL TITL 2 INHIBITORS. JRNL REF J.AM.CHEM.SOC. V. 134 17059 2012 JRNL REFN ISSN 0002-7863 JRNL PMID 22991965 JRNL DOI 10.1021/JA305839B REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, AMBER REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LZG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103019. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288.15 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 UM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 50 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 5 MM [U- REMARK 210 100% 2H] DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, AMBER REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 -59.78 -128.82 REMARK 500 1 MET A 6 48.28 -143.22 REMARK 500 1 LYS A 31 -55.79 -160.61 REMARK 500 1 PRO A 32 -171.45 -59.35 REMARK 500 1 GLN A 44 79.69 -107.18 REMARK 500 1 ARG A 65 78.09 65.87 REMARK 500 1 HIS A 73 -47.35 -140.05 REMARK 500 1 SER A 118 -61.07 -124.42 REMARK 500 2 ASN A 5 87.64 63.49 REMARK 500 2 MET A 6 -63.46 -145.72 REMARK 500 2 THR A 10 -56.10 -121.15 REMARK 500 2 LYS A 31 -59.52 -168.68 REMARK 500 2 ARG A 65 68.85 64.18 REMARK 500 2 HIS A 73 -42.65 -137.18 REMARK 500 2 SER A 78 54.82 -110.72 REMARK 500 2 ASN A 106 38.04 -98.31 REMARK 500 2 GLN A 113 64.68 -102.01 REMARK 500 2 SER A 118 -65.70 -96.11 REMARK 500 2 SER A 121 45.54 -108.30 REMARK 500 2 VAL A 122 103.38 60.09 REMARK 500 2 SER A 123 54.18 -140.97 REMARK 500 3 ASN A 5 -82.34 -65.94 REMARK 500 3 LYS A 31 -65.81 -131.18 REMARK 500 3 PRO A 32 -172.39 -65.69 REMARK 500 3 ARG A 65 77.21 63.29 REMARK 500 3 GLU A 69 143.94 72.87 REMARK 500 3 GLN A 72 137.04 51.86 REMARK 500 3 HIS A 73 -54.14 -139.30 REMARK 500 3 VAL A 110 -62.69 -92.07 REMARK 500 3 GLN A 113 130.08 70.24 REMARK 500 3 ASP A 117 143.25 69.83 REMARK 500 4 ASP A 11 -52.96 -123.32 REMARK 500 4 LYS A 31 -63.57 -151.10 REMARK 500 4 ARG A 65 87.49 62.91 REMARK 500 4 TYR A 67 48.02 -102.26 REMARK 500 4 GLN A 72 109.72 48.70 REMARK 500 4 HIS A 73 -49.58 -140.93 REMARK 500 4 ASN A 106 51.81 -104.90 REMARK 500 4 SER A 121 51.29 -115.39 REMARK 500 4 VAL A 122 95.03 61.67 REMARK 500 5 LYS A 31 -63.07 -160.15 REMARK 500 5 PRO A 32 -168.73 -67.10 REMARK 500 5 ARG A 65 76.30 63.51 REMARK 500 5 GLN A 71 -81.38 -118.99 REMARK 500 5 GLN A 72 119.91 178.38 REMARK 500 5 HIS A 73 -58.64 -156.91 REMARK 500 5 ASN A 106 38.83 -94.64 REMARK 500 5 GLU A 114 103.80 -163.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13Q A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18755 RELATED DB: BMRB DBREF 2LZG A 1 125 UNP Q00987 MDM2_HUMAN 1 125 SEQRES 1 A 125 MET CYS ASN THR ASN MET SER VAL PRO THR ASP GLY ALA SEQRES 2 A 125 VAL THR THR SER GLN ILE PRO ALA SER GLU GLN GLU THR SEQRES 3 A 125 LEU VAL ARG PRO LYS PRO LEU LEU LEU LYS LEU LEU LYS SEQRES 4 A 125 SER VAL GLY ALA GLN LYS ASP THR TYR THR MET LYS GLU SEQRES 5 A 125 VAL LEU PHE TYR LEU GLY GLN TYR ILE MET THR LYS ARG SEQRES 6 A 125 LEU TYR ASP GLU LYS GLN GLN HIS ILE VAL TYR CYS SER SEQRES 7 A 125 ASN ASP LEU LEU GLY ASP LEU PHE GLY VAL PRO SER PHE SEQRES 8 A 125 SER VAL LYS GLU HIS ARG LYS ILE TYR THR MET ILE TYR SEQRES 9 A 125 ARG ASN LEU VAL VAL VAL ASN GLN GLN GLU SER SER ASP SEQRES 10 A 125 SER GLY THR SER VAL SER GLU ASN HET 13Q A 201 51 HETNAM 13Q [(3R,5R,6S)-5-(3-CHLOROPHENYL)-6-(4-CHLOROPHENYL)-1- HETNAM 2 13Q (CYCLOPROPYLMETHYL)-2-OXOPIPERIDIN-3-YL]ACETIC ACID FORMUL 2 13Q C23 H23 CL2 N O3 HELIX 1 1 LEU A 33 LYS A 36 5 4 HELIX 2 2 LEU A 37 GLY A 42 1 6 HELIX 3 3 MET A 50 LYS A 64 1 15 HELIX 4 4 LEU A 81 PHE A 86 1 6 HELIX 5 5 GLU A 95 TYR A 104 1 10 SHEET 1 A 2 LEU A 27 VAL A 28 0 SHEET 2 A 2 TYR A 48 THR A 49 -1 O TYR A 48 N VAL A 28 SHEET 1 B 2 VAL A 75 TYR A 76 0 SHEET 2 B 2 SER A 90 PHE A 91 -1 O PHE A 91 N VAL A 75 SITE 1 AC1 8 VAL A 14 THR A 16 LEU A 54 GLY A 58 SITE 2 AC1 8 ILE A 61 TYR A 67 LYS A 94 HIS A 96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1