HEADER MEMBRANE PROTEIN 21-OCT-12 2M07 TITLE NMR STRUCTURE OF OMPX IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN X; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-171; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: OMPX, YBIG, B0814, JW0799; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11A KEYWDS BETA BARREL, MEMBRANE PROTEIN, STRUCTURAL GENOMICS, PSI-BIOLOGY, KEYWDS 2 MEMBRANE PROTEIN STRUCTURES BY SOLUTION NMR, MPSBYNMR EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.X.HAGN,M.ETZKORN,T.RASCHLE,G.WAGNER,MEMBRANE PROTEIN STRUCTURES BY AUTHOR 2 SOLUTION NMR (MPSBYNMR) REVDAT 4 14-JUN-23 2M07 1 REMARK REVDAT 3 20-FEB-13 2M07 1 JRNL REVDAT 2 23-JAN-13 2M07 1 JRNL REVDAT 1 12-DEC-12 2M07 0 JRNL AUTH F.HAGN,M.ETZKORN,T.RASCHLE,G.WAGNER JRNL TITL OPTIMIZED PHOSPHOLIPID BILAYER NANODISCS FACILITATE JRNL TITL 2 HIGH-RESOLUTION STRUCTURE DETERMINATION OF MEMBRANE JRNL TITL 3 PROTEINS. JRNL REF J.AM.CHEM.SOC. V. 135 1919 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23294159 JRNL DOI 10.1021/JA310901F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M07 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103043. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 10 MM EDTA, REMARK 210 0.05 % SODIUM AZIDE, 110 MM DPC, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HN(CO)CA; 3D HN(CA)CO; REMARK 210 3D HNCACB; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 53 132.12 62.98 REMARK 500 1 ASN A 58 31.49 35.12 REMARK 500 1 TRP A 76 46.28 -86.16 REMARK 500 1 GLU A 94 -69.48 -175.78 REMARK 500 1 PRO A 96 99.79 -45.77 REMARK 500 1 GLU A 119 -171.94 66.48 REMARK 500 2 GLN A 17 -0.58 69.86 REMARK 500 2 SER A 49 -81.75 62.36 REMARK 500 2 ALA A 52 93.96 -67.88 REMARK 500 2 LYS A 59 -68.01 -138.35 REMARK 500 2 TRP A 76 47.94 -86.06 REMARK 500 2 THR A 93 -66.26 -162.77 REMARK 500 2 THR A 102 -169.68 47.14 REMARK 500 2 GLU A 119 -165.95 67.27 REMARK 500 3 GLN A 17 -44.45 155.58 REMARK 500 3 LYS A 20 170.66 -58.15 REMARK 500 3 ASP A 56 -174.40 61.93 REMARK 500 3 TYR A 57 -175.69 -54.54 REMARK 500 3 ASP A 75 38.46 -86.44 REMARK 500 3 GLU A 119 -167.61 67.24 REMARK 500 4 THR A 2 -58.34 -148.85 REMARK 500 4 ASP A 56 -79.56 66.66 REMARK 500 4 ASP A 75 85.57 -165.31 REMARK 500 4 HIS A 100 97.27 -49.74 REMARK 500 4 GLU A 119 -166.48 67.84 REMARK 500 5 GLN A 17 -52.91 170.50 REMARK 500 5 LYS A 20 163.78 -49.50 REMARK 500 5 ARG A 50 -68.90 -98.44 REMARK 500 5 ASP A 56 152.30 62.23 REMARK 500 5 ASN A 58 111.85 -173.58 REMARK 500 5 LYS A 59 -74.55 -147.43 REMARK 500 5 TRP A 76 29.51 40.39 REMARK 500 5 MET A 118 174.03 -55.71 REMARK 500 5 GLU A 119 -174.70 65.35 REMARK 500 6 SER A 49 34.73 -166.22 REMARK 500 6 ASN A 60 109.48 61.79 REMARK 500 6 TRP A 76 40.77 -87.47 REMARK 500 6 GLU A 94 88.13 54.79 REMARK 500 6 GLU A 119 -167.48 78.35 REMARK 500 7 GLN A 17 -54.55 165.08 REMARK 500 7 ARG A 50 -68.25 -167.30 REMARK 500 7 ASN A 60 140.12 66.91 REMARK 500 7 ASP A 75 -168.61 -78.98 REMARK 500 7 TRP A 76 45.05 -85.49 REMARK 500 7 GLU A 94 -71.62 -104.35 REMARK 500 7 TYR A 98 -54.97 -174.10 REMARK 500 7 THR A 102 169.94 67.18 REMARK 500 7 GLU A 119 -157.12 74.26 REMARK 500 8 ASP A 75 96.49 -173.75 REMARK 500 8 GLU A 94 23.26 45.71 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 131 ILE A 132 1 -146.65 REMARK 500 ARG A 131 ILE A 132 2 -144.19 REMARK 500 ARG A 131 ILE A 132 3 -141.23 REMARK 500 ARG A 131 ILE A 132 4 -142.87 REMARK 500 ARG A 131 ILE A 132 5 -143.34 REMARK 500 ARG A 131 ILE A 132 6 -144.30 REMARK 500 ARG A 131 ILE A 132 7 -146.94 REMARK 500 ARG A 131 ILE A 132 8 -144.02 REMARK 500 ARG A 131 ILE A 132 9 -144.94 REMARK 500 ARG A 131 ILE A 132 10 -146.38 REMARK 500 ARG A 131 ILE A 132 11 -145.30 REMARK 500 ARG A 131 ILE A 132 12 -147.80 REMARK 500 ARG A 131 ILE A 132 13 -145.21 REMARK 500 ARG A 131 ILE A 132 14 -143.38 REMARK 500 ARG A 131 ILE A 132 15 -146.56 REMARK 500 ARG A 131 ILE A 132 16 -142.09 REMARK 500 ARG A 131 ILE A 132 17 -144.79 REMARK 500 ARG A 131 ILE A 132 18 -144.48 REMARK 500 ARG A 131 ILE A 132 19 -142.74 REMARK 500 ARG A 131 ILE A 132 20 -145.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4936 RELATED DB: BMRB REMARK 900 NMR RESONANCE ASSIGNMENT OF OMPX IN DHPC MICELLES REMARK 900 RELATED ID: 1Q9F RELATED DB: PDB REMARK 900 NMR STRUCTURE OF OMPX IN DHPC MICELLES REMARK 900 RELATED ID: 1QJ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OMPX REMARK 900 RELATED ID: 18796 RELATED DB: BMRB REMARK 900 NMR RESONANCE ASSIGNMENT OF OMPX IN PHOSPHOLIPID NANODISCS REMARK 900 RELATED ID: 2M06 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF OMPX IN PHOSPHOLIPID NANODISCS REMARK 900 RELATED ID: 18797 RELATED DB: BMRB REMARK 900 RELATED ID: MPSBYNMR-013 RELATED DB: TARGETTRACK DBREF 2M07 A 1 148 UNP P0A917 OMPX_ECOLI 24 171 SEQRES 1 A 148 ALA THR SER THR VAL THR GLY GLY TYR ALA GLN SER ASP SEQRES 2 A 148 ALA GLN GLY GLN MET ASN LYS MET GLY GLY PHE ASN LEU SEQRES 3 A 148 LYS TYR ARG TYR GLU GLU ASP ASN SER PRO LEU GLY VAL SEQRES 4 A 148 ILE GLY SER PHE THR TYR THR GLU LYS SER ARG THR ALA SEQRES 5 A 148 SER SER GLY ASP TYR ASN LYS ASN GLN TYR TYR GLY ILE SEQRES 6 A 148 THR ALA GLY PRO ALA TYR ARG ILE ASN ASP TRP ALA SER SEQRES 7 A 148 ILE TYR GLY VAL VAL GLY VAL GLY TYR GLY LYS PHE GLN SEQRES 8 A 148 THR THR GLU TYR PRO THR TYR LYS HIS ASP THR SER ASP SEQRES 9 A 148 TYR GLY PHE SER TYR GLY ALA GLY LEU GLN PHE ASN PRO SEQRES 10 A 148 MET GLU ASN VAL ALA LEU ASP PHE SER TYR GLU GLN SER SEQRES 11 A 148 ARG ILE ARG SER VAL ASP VAL GLY THR TRP ILE ALA GLY SEQRES 12 A 148 VAL GLY TYR ARG PHE HELIX 1 1 MET A 118 VAL A 121 5 4 SHEET 1 A 9 THR A 4 SER A 12 0 SHEET 2 A 9 MET A 21 ARG A 29 -1 O GLY A 23 N ALA A 10 SHEET 3 A 9 GLY A 38 GLU A 47 -1 O GLU A 47 N GLY A 22 SHEET 4 A 9 ASN A 60 TYR A 71 -1 O ALA A 70 N GLY A 38 SHEET 5 A 9 SER A 78 PHE A 90 -1 O ILE A 79 N TYR A 71 SHEET 6 A 9 SER A 103 PHE A 115 -1 O GLY A 106 N GLY A 86 SHEET 7 A 9 ALA A 122 SER A 130 -1 O GLN A 129 N TYR A 109 SHEET 8 A 9 VAL A 137 ARG A 147 -1 O ILE A 141 N SER A 126 SHEET 9 A 9 THR A 4 SER A 12 -1 N GLY A 7 O VAL A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1