data_2M0O # _entry.id 2M0O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2M0O RCSB RCSB103060 BMRB 18813 WWPDB D_1000103060 # _pdbx_database_related.db_id 18813 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M0O _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-30 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Song, J.' 1 'Patel, D.J.' 2 # _citation.id primary _citation.title 'An H3K36 Methylation-Engaging Tudor Motif of Polycomb-like Proteins Mediates PRC2 Complex Targeting.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 49 _citation.page_first 571 _citation.page_last 582 _citation.year 2013 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23273982 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.11.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Cai, L.' 1 primary 'Rothbart, S.B.' 2 primary 'Lu, R.' 3 primary 'Xu, B.' 4 primary 'Chen, W.Y.' 5 primary 'Tripathy, A.' 6 primary 'Rockowitz, S.' 7 primary 'Zheng, D.' 8 primary 'Patel, D.J.' 9 primary 'Allis, C.D.' 10 primary 'Strahl, B.D.' 11 primary 'Song, J.' 12 primary 'Wang, G.G.' 13 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PHD finger protein 1' 8737.847 1 ? ? ? ? 2 polymer syn 'H3K36me3 peptide' 1259.500 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein PHF1, Polycomb-like protein 1, hPCl1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no SRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL SRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL A ? 2 'polypeptide(L)' no yes 'ATGGV(M3L)KPHRY' ATGGVKKPHRY B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ARG n 1 3 LEU n 1 4 SER n 1 5 ARG n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 SER n 1 10 SER n 1 11 LEU n 1 12 TRP n 1 13 ASP n 1 14 PRO n 1 15 ALA n 1 16 SER n 1 17 PRO n 1 18 ALA n 1 19 PRO n 1 20 THR n 1 21 SER n 1 22 GLY n 1 23 PRO n 1 24 ARG n 1 25 PRO n 1 26 ARG n 1 27 LEU n 1 28 TRP n 1 29 GLU n 1 30 GLY n 1 31 GLN n 1 32 ASP n 1 33 VAL n 1 34 LEU n 1 35 ALA n 1 36 ARG n 1 37 TRP n 1 38 THR n 1 39 ASP n 1 40 GLY n 1 41 LEU n 1 42 LEU n 1 43 TYR n 1 44 LEU n 1 45 GLY n 1 46 THR n 1 47 ILE n 1 48 LYS n 1 49 LYS n 1 50 VAL n 1 51 ASP n 1 52 SER n 1 53 ALA n 1 54 ARG n 1 55 GLU n 1 56 VAL n 1 57 CYS n 1 58 LEU n 1 59 VAL n 1 60 GLN n 1 61 PHE n 1 62 GLU n 1 63 ASP n 1 64 ASP n 1 65 SER n 1 66 GLN n 1 67 PHE n 1 68 LEU n 1 69 VAL n 1 70 LEU n 1 71 TRP n 1 72 LYS n 1 73 ASP n 1 74 ILE n 1 75 SER n 1 76 PRO n 1 77 ALA n 1 78 ALA n 1 79 LEU n 2 1 ALA n 2 2 THR n 2 3 GLY n 2 4 GLY n 2 5 VAL n 2 6 M3L n 2 7 LYS n 2 8 PRO n 2 9 HIS n 2 10 ARG n 2 11 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PHF1, PCL1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PRSF-Duet _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PHF1_HUMAN O43189 1 RLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAAL 6 ? 2 PDB 2M0O 2M0O 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M0O A 2 ? 79 ? O43189 6 ? 83 ? 6 83 2 2 2M0O B 1 ? 11 ? 2M0O 331 ? 341 ? 331 341 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2M0O _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O43189 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'EXPRESSION TAG' _struct_ref_seq_dif.pdbx_auth_seq_num 5 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-13C NOESY aliphatic' 1 2 1 '3D 1H-13C NOESY aromatic' 1 3 1 '2D 1H-15N HSQC' 1 4 1 '3D HNCACB' 1 5 1 '3D HBHA(CO)NH' 1 6 1 '3D CBCA(CO)NH' 1 7 1 '3D HCCH-TOCSY' 1 8 1 '2D 1H-1H NOESY' 1 9 1 '3D 1H-15N NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.3-0.5 mM [U-100% 13C; U-100% 15N] PHF1 tudor, 0.6-1.0 mM H3K36me3 peptide, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker DMX 1 'Bruker DMX' 700 Bruker DMX 2 'Bruker DMX' 600 Bruker DMX 3 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2M0O _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M0O _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M0O _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_software.authors 'Schwieters, Kuszewski, Tjandra and Clore' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name X-PLOR_NIH _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M0O _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M0O _struct.title 'The solution structure of human PHF1 in complex with H3K36me3' _struct.pdbx_descriptor 'PHD finger protein 1, H3K36me3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M0O _struct_keywords.pdbx_keywords 'PEPTIDE BINDING PROTEIN' _struct_keywords.text 'Tudor Domain, H3K36me3 binding, PEPTIDE BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B VAL 5 C ? ? ? 1_555 B M3L 6 N ? ? B VAL 335 B M3L 336 1_555 ? ? ? ? ? ? ? 1.349 ? covale2 covale ? ? B M3L 6 C ? ? ? 1_555 B LYS 7 N ? ? B M3L 336 B LYS 337 1_555 ? ? ? ? ? ? ? 1.337 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 32 ? LEU A 34 ? ASP A 36 LEU A 38 A 2 LEU A 44 ? ASP A 51 ? LEU A 48 ASP A 55 A 3 VAL A 56 ? PHE A 61 ? VAL A 60 PHE A 65 A 4 GLN A 66 ? LEU A 70 ? GLN A 70 LEU A 74 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 33 ? N VAL A 37 O GLY A 45 ? O GLY A 49 A 2 3 N THR A 46 ? N THR A 50 O GLN A 60 ? O GLN A 64 A 3 4 N CYS A 57 ? N CYS A 61 O VAL A 69 ? O VAL A 73 # _atom_sites.entry_id 2M0O _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 5 5 SER SER A . n A 1 2 ARG 2 6 6 ARG ARG A . n A 1 3 LEU 3 7 7 LEU LEU A . n A 1 4 SER 4 8 8 SER SER A . n A 1 5 ARG 5 9 9 ARG ARG A . n A 1 6 SER 6 10 10 SER SER A . n A 1 7 GLY 7 11 11 GLY GLY A . n A 1 8 ALA 8 12 12 ALA ALA A . n A 1 9 SER 9 13 13 SER SER A . n A 1 10 SER 10 14 14 SER SER A . n A 1 11 LEU 11 15 15 LEU LEU A . n A 1 12 TRP 12 16 16 TRP TRP A . n A 1 13 ASP 13 17 17 ASP ASP A . n A 1 14 PRO 14 18 18 PRO PRO A . n A 1 15 ALA 15 19 19 ALA ALA A . n A 1 16 SER 16 20 20 SER SER A . n A 1 17 PRO 17 21 21 PRO PRO A . n A 1 18 ALA 18 22 22 ALA ALA A . n A 1 19 PRO 19 23 23 PRO PRO A . n A 1 20 THR 20 24 24 THR THR A . n A 1 21 SER 21 25 25 SER SER A . n A 1 22 GLY 22 26 26 GLY GLY A . n A 1 23 PRO 23 27 27 PRO PRO A . n A 1 24 ARG 24 28 28 ARG ARG A . n A 1 25 PRO 25 29 29 PRO PRO A . n A 1 26 ARG 26 30 30 ARG ARG A . n A 1 27 LEU 27 31 31 LEU LEU A . n A 1 28 TRP 28 32 32 TRP TRP A . n A 1 29 GLU 29 33 33 GLU GLU A . n A 1 30 GLY 30 34 34 GLY GLY A . n A 1 31 GLN 31 35 35 GLN GLN A . n A 1 32 ASP 32 36 36 ASP ASP A . n A 1 33 VAL 33 37 37 VAL VAL A . n A 1 34 LEU 34 38 38 LEU LEU A . n A 1 35 ALA 35 39 39 ALA ALA A . n A 1 36 ARG 36 40 40 ARG ARG A . n A 1 37 TRP 37 41 41 TRP TRP A . n A 1 38 THR 38 42 42 THR THR A . n A 1 39 ASP 39 43 43 ASP ASP A . n A 1 40 GLY 40 44 44 GLY GLY A . n A 1 41 LEU 41 45 45 LEU LEU A . n A 1 42 LEU 42 46 46 LEU LEU A . n A 1 43 TYR 43 47 47 TYR TYR A . n A 1 44 LEU 44 48 48 LEU LEU A . n A 1 45 GLY 45 49 49 GLY GLY A . n A 1 46 THR 46 50 50 THR THR A . n A 1 47 ILE 47 51 51 ILE ILE A . n A 1 48 LYS 48 52 52 LYS LYS A . n A 1 49 LYS 49 53 53 LYS LYS A . n A 1 50 VAL 50 54 54 VAL VAL A . n A 1 51 ASP 51 55 55 ASP ASP A . n A 1 52 SER 52 56 56 SER SER A . n A 1 53 ALA 53 57 57 ALA ALA A . n A 1 54 ARG 54 58 58 ARG ARG A . n A 1 55 GLU 55 59 59 GLU GLU A . n A 1 56 VAL 56 60 60 VAL VAL A . n A 1 57 CYS 57 61 61 CYS CYS A . n A 1 58 LEU 58 62 62 LEU LEU A . n A 1 59 VAL 59 63 63 VAL VAL A . n A 1 60 GLN 60 64 64 GLN GLN A . n A 1 61 PHE 61 65 65 PHE PHE A . n A 1 62 GLU 62 66 66 GLU GLU A . n A 1 63 ASP 63 67 67 ASP ASP A . n A 1 64 ASP 64 68 68 ASP ASP A . n A 1 65 SER 65 69 69 SER SER A . n A 1 66 GLN 66 70 70 GLN GLN A . n A 1 67 PHE 67 71 71 PHE PHE A . n A 1 68 LEU 68 72 72 LEU LEU A . n A 1 69 VAL 69 73 73 VAL VAL A . n A 1 70 LEU 70 74 74 LEU LEU A . n A 1 71 TRP 71 75 75 TRP TRP A . n A 1 72 LYS 72 76 76 LYS LYS A . n A 1 73 ASP 73 77 77 ASP ASP A . n A 1 74 ILE 74 78 78 ILE ILE A . n A 1 75 SER 75 79 79 SER SER A . n A 1 76 PRO 76 80 80 PRO PRO A . n A 1 77 ALA 77 81 81 ALA ALA A . n A 1 78 ALA 78 82 82 ALA ALA A . n A 1 79 LEU 79 83 83 LEU LEU A . n B 2 1 ALA 1 331 331 ALA ALA B . n B 2 2 THR 2 332 332 THR THR B . n B 2 3 GLY 3 333 333 GLY GLY B . n B 2 4 GLY 4 334 334 GLY GLY B . n B 2 5 VAL 5 335 335 VAL VAL B . n B 2 6 M3L 6 336 336 M3L M3L B . n B 2 7 LYS 7 337 337 LYS LYS B . n B 2 8 PRO 8 338 338 PRO PRO B . n B 2 9 HIS 9 339 339 HIS HIS B . n B 2 10 ARG 10 340 340 ARG ARG B . n B 2 11 TYR 11 341 341 TYR TYR B . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 336 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-16 2 'Structure model' 1 1 2013-02-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'PHF1 tudor-1' ? 0.3-0.5 mM '[U-100% 13C; U-100% 15N]' 1 'H3K36me3 peptide-2' ? 0.6-1.0 mM ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HG A CYS 61 ? ? HE1 A TRP 75 ? ? 1.26 2 4 HG A CYS 61 ? ? HE1 A TRP 75 ? ? 1.23 3 5 HG A CYS 61 ? ? HE1 A TRP 75 ? ? 1.34 4 6 OE1 A GLU 66 ? ? HZ2 B LYS 337 ? ? 1.55 5 8 HG A CYS 61 ? ? HE1 A TRP 75 ? ? 1.29 6 13 HG A CYS 61 ? ? HE1 A TRP 75 ? ? 1.30 7 15 OE1 A GLU 66 ? ? HZ2 B LYS 337 ? ? 1.54 8 17 OE1 A GLU 66 ? ? HZ3 B LYS 337 ? ? 1.53 9 18 OE2 A GLU 66 ? ? HZ1 B LYS 337 ? ? 1.52 10 20 OE1 A GLU 66 ? ? HZ1 B LYS 337 ? ? 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 10 ? ? 63.34 120.97 2 1 SER A 14 ? ? 55.17 101.09 3 1 ASP A 67 ? ? -87.54 34.72 4 1 ALA A 82 ? ? -141.24 -45.26 5 1 VAL B 335 ? ? -93.69 -125.12 6 1 PRO B 338 ? ? -67.39 -148.66 7 1 ARG B 340 ? ? -154.32 -36.11 8 2 ARG A 6 ? ? 58.97 108.50 9 2 ALA A 12 ? ? 62.74 121.24 10 2 SER A 14 ? ? -139.03 -42.66 11 2 ALA A 22 ? ? 54.64 98.36 12 2 PRO A 27 ? ? -76.28 -81.93 13 2 ARG A 28 ? ? -162.76 -52.11 14 2 ARG A 30 ? ? -134.52 -35.23 15 2 ASP A 67 ? ? -87.62 34.17 16 2 ALA A 82 ? ? -131.75 -42.55 17 2 M3L B 336 ? ? 53.74 169.09 18 2 PRO B 338 ? ? -78.83 -164.23 19 2 ARG B 340 ? ? -146.08 -54.48 20 3 LEU A 7 ? ? -134.58 -43.93 21 3 LEU A 15 ? ? 70.08 -53.56 22 3 THR A 24 ? ? -147.92 -43.92 23 3 PRO A 27 ? ? -80.50 32.97 24 3 ASP A 67 ? ? -91.29 36.69 25 3 ALA A 82 ? ? 68.19 -58.92 26 3 THR B 332 ? ? 61.62 118.62 27 3 VAL B 335 ? ? 46.91 -179.27 28 3 ARG B 340 ? ? -96.49 58.99 29 4 LEU A 7 ? ? 69.62 -58.97 30 4 SER A 8 ? ? 56.15 109.14 31 4 SER A 13 ? ? -137.10 -40.13 32 4 LEU A 15 ? ? 71.24 -15.72 33 4 ARG A 30 ? ? -144.77 -37.45 34 4 ASP A 67 ? ? -88.45 33.16 35 4 THR B 332 ? ? 62.02 119.46 36 4 PRO B 338 ? ? -63.53 -154.49 37 4 ARG B 340 ? ? -147.25 -41.05 38 5 LEU A 7 ? ? -131.03 -43.79 39 5 SER A 14 ? ? 62.42 123.84 40 5 SER A 20 ? ? 63.43 158.04 41 5 ARG A 30 ? ? -164.27 -37.93 42 5 ASP A 67 ? ? -90.28 34.88 43 5 PRO B 338 ? ? -76.06 -158.43 44 5 ARG B 340 ? ? -96.84 59.96 45 6 SER A 13 ? ? -125.43 -50.79 46 6 SER A 14 ? ? 57.28 177.66 47 6 ASP A 67 ? ? -91.13 33.82 48 7 ARG A 28 ? ? 56.02 80.29 49 7 ARG A 30 ? ? 69.81 -29.40 50 7 ASP A 67 ? ? -90.61 35.68 51 7 M3L B 336 ? ? 56.06 132.95 52 8 SER A 20 ? ? -146.43 -52.83 53 8 ASP A 67 ? ? -87.94 33.68 54 8 VAL B 335 ? ? -158.06 -71.52 55 8 M3L B 336 ? ? 52.53 160.23 56 8 PRO B 338 ? ? -81.23 -154.91 57 8 HIS B 339 ? ? -63.86 -162.72 58 9 ARG A 6 ? ? 62.18 119.58 59 9 SER A 13 ? ? -143.53 -48.68 60 9 ALA A 22 ? ? -138.90 -50.56 61 9 SER A 25 ? ? 63.37 130.06 62 9 ASP A 67 ? ? -90.94 32.97 63 9 ALA A 82 ? ? -132.09 -42.04 64 9 VAL B 335 ? ? -104.62 -64.88 65 9 M3L B 336 ? ? 59.57 153.23 66 9 PRO B 338 ? ? -83.82 -155.04 67 10 LEU A 7 ? ? 63.43 125.54 68 10 SER A 8 ? ? 63.37 145.08 69 10 LEU A 15 ? ? -135.09 -45.82 70 10 THR A 24 ? ? 63.52 126.69 71 10 ARG A 28 ? ? -142.91 -49.36 72 10 ASP A 67 ? ? -94.48 39.71 73 10 ALA A 81 ? ? -78.43 -155.44 74 10 ALA A 82 ? ? 72.82 -8.68 75 11 THR A 24 ? ? 54.36 103.83 76 11 ARG A 30 ? ? 72.53 -47.62 77 11 ASP A 67 ? ? -88.55 32.95 78 12 LEU A 15 ? ? -138.48 -51.08 79 12 PRO A 18 ? ? -78.01 47.32 80 12 ARG A 30 ? ? -120.04 -68.47 81 12 ASP A 67 ? ? -90.17 32.98 82 12 ALA A 82 ? ? 67.54 133.76 83 12 VAL B 335 ? ? -120.64 -50.64 84 12 M3L B 336 ? ? 55.80 160.36 85 12 PRO B 338 ? ? -79.09 -158.17 86 12 ARG B 340 ? ? 42.08 103.97 87 13 ARG A 6 ? ? 71.01 -47.00 88 13 LEU A 7 ? ? 63.95 163.28 89 13 LEU A 15 ? ? -141.61 -55.19 90 13 SER A 20 ? ? 63.05 117.88 91 13 ALA A 22 ? ? 64.46 136.86 92 13 ASP A 67 ? ? -88.84 34.66 93 13 THR B 332 ? ? 61.47 114.40 94 13 M3L B 336 ? ? 56.75 136.60 95 13 PRO B 338 ? ? -76.40 -163.44 96 13 ARG B 340 ? ? 56.21 -69.16 97 14 SER A 8 ? ? 64.27 157.79 98 14 SER A 10 ? ? -136.96 -42.79 99 14 SER A 13 ? ? 56.02 104.14 100 14 SER A 14 ? ? -142.27 -9.27 101 14 SER A 20 ? ? 61.71 101.59 102 14 ARG A 30 ? ? -146.18 -44.14 103 14 ASP A 67 ? ? -88.87 34.73 104 14 VAL B 335 ? ? -101.44 -79.00 105 14 ARG B 340 ? ? 56.70 78.72 106 15 SER A 8 ? ? 69.37 -53.27 107 15 LEU A 15 ? ? -138.39 -45.83 108 15 SER A 20 ? ? 62.26 158.95 109 15 ASP A 67 ? ? -90.60 34.08 110 15 M3L B 336 ? ? 57.74 129.68 111 15 PRO B 338 ? ? -78.30 -162.69 112 15 ARG B 340 ? ? 67.05 -61.65 113 16 SER A 8 ? ? -135.12 -44.92 114 16 ARG A 9 ? ? -132.69 -47.94 115 16 SER A 10 ? ? -134.72 -43.64 116 16 SER A 13 ? ? -131.25 -44.47 117 16 SER A 25 ? ? 61.38 126.75 118 16 ARG A 30 ? ? -122.41 -63.00 119 16 ASP A 67 ? ? -85.21 33.07 120 16 ALA A 82 ? ? 68.71 -32.42 121 16 M3L B 336 ? ? 55.18 165.53 122 17 SER A 10 ? ? 55.90 103.16 123 17 ALA A 12 ? ? -135.23 -45.14 124 17 ALA A 22 ? ? -136.56 -51.17 125 17 ASP A 67 ? ? -91.60 36.50 126 17 M3L B 336 ? ? 53.71 156.19 127 17 ARG B 340 ? ? 68.66 -56.10 128 18 SER A 14 ? ? 60.16 114.28 129 18 PRO A 18 ? ? -71.59 -93.78 130 18 PRO A 23 ? ? -78.11 40.58 131 18 THR A 24 ? ? 63.20 176.83 132 18 SER A 25 ? ? 67.35 146.48 133 18 ARG A 30 ? ? -172.52 -166.64 134 18 ASP A 67 ? ? -87.31 32.32 135 18 THR B 332 ? ? -136.54 -42.50 136 18 VAL B 335 ? ? -138.38 -33.96 137 18 M3L B 336 ? ? 54.71 -175.22 138 18 PRO B 338 ? ? -76.67 -157.33 139 18 ARG B 340 ? ? 48.64 112.10 140 19 SER A 8 ? ? -93.49 57.68 141 19 SER A 14 ? ? 58.71 107.47 142 19 LEU A 15 ? ? -133.02 -48.28 143 19 ARG A 28 ? ? -132.62 -48.48 144 19 ARG A 30 ? ? 76.78 -19.27 145 19 ASP A 67 ? ? -90.34 32.30 146 19 ALA A 82 ? ? 64.74 128.98 147 19 VAL B 335 ? ? 46.78 -87.69 148 19 M3L B 336 ? ? 57.01 157.27 149 19 LYS B 337 ? ? -145.26 49.89 150 19 PRO B 338 ? ? -77.39 -162.58 151 19 ARG B 340 ? ? 38.40 102.85 152 20 ARG A 6 ? ? 63.32 132.41 153 20 ALA A 22 ? ? 58.93 111.50 154 20 THR A 42 ? ? -79.46 20.12 155 20 ASP A 67 ? ? -87.79 32.68 156 20 M3L B 336 ? ? 53.77 161.66 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 83 ? O ? A LEU 79 O 2 1 Y 1 B TYR 341 ? O ? B TYR 11 O 3 2 Y 1 A LEU 83 ? O ? A LEU 79 O 4 2 Y 1 B TYR 341 ? O ? B TYR 11 O 5 3 Y 1 A LEU 83 ? O ? A LEU 79 O 6 3 Y 1 B TYR 341 ? O ? B TYR 11 O 7 4 Y 1 A LEU 83 ? O ? A LEU 79 O 8 4 Y 1 B TYR 341 ? O ? B TYR 11 O 9 5 Y 1 A LEU 83 ? O ? A LEU 79 O 10 5 Y 1 B TYR 341 ? O ? B TYR 11 O 11 6 Y 1 A LEU 83 ? O ? A LEU 79 O 12 6 Y 1 B TYR 341 ? O ? B TYR 11 O 13 7 Y 1 A LEU 83 ? O ? A LEU 79 O 14 7 Y 1 B TYR 341 ? O ? B TYR 11 O 15 8 Y 1 A LEU 83 ? O ? A LEU 79 O 16 8 Y 1 B TYR 341 ? O ? B TYR 11 O 17 9 Y 1 A LEU 83 ? O ? A LEU 79 O 18 9 Y 1 B TYR 341 ? O ? B TYR 11 O 19 10 Y 1 A LEU 83 ? O ? A LEU 79 O 20 10 Y 1 B TYR 341 ? O ? B TYR 11 O 21 11 Y 1 A LEU 83 ? O ? A LEU 79 O 22 11 Y 1 B TYR 341 ? O ? B TYR 11 O 23 12 Y 1 A LEU 83 ? O ? A LEU 79 O 24 12 Y 1 B TYR 341 ? O ? B TYR 11 O 25 13 Y 1 A LEU 83 ? O ? A LEU 79 O 26 13 Y 1 B TYR 341 ? O ? B TYR 11 O 27 14 Y 1 A LEU 83 ? O ? A LEU 79 O 28 14 Y 1 B TYR 341 ? O ? B TYR 11 O 29 15 Y 1 A LEU 83 ? O ? A LEU 79 O 30 15 Y 1 B TYR 341 ? O ? B TYR 11 O 31 16 Y 1 A LEU 83 ? O ? A LEU 79 O 32 16 Y 1 B TYR 341 ? O ? B TYR 11 O 33 17 Y 1 A LEU 83 ? O ? A LEU 79 O 34 17 Y 1 B TYR 341 ? O ? B TYR 11 O 35 18 Y 1 A LEU 83 ? O ? A LEU 79 O 36 18 Y 1 B TYR 341 ? O ? B TYR 11 O 37 19 Y 1 A LEU 83 ? O ? A LEU 79 O 38 19 Y 1 B TYR 341 ? O ? B TYR 11 O 39 20 Y 1 A LEU 83 ? O ? A LEU 79 O 40 20 Y 1 B TYR 341 ? O ? B TYR 11 O #