data_2M20 # _entry.id 2M20 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2M20 RCSB RCSB103108 BMRB 18888 WWPDB D_1000103108 # _pdbx_database_related.db_id 18888 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M20 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-12-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Endres, N.F.' 1 'Das, R.' 2 'Smith, A.' 3 'Arkhipov, A.' 4 'Kovacs, E.' 5 'Huang, Y.' 6 'Pelton, J.G.' 7 'Shan, Y.' 8 'Shaw, D.E.' 9 'Wemmer, D.E.' 10 'Groves, J.T.' 11 'Kuriyan, J.' 12 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Conformational Coupling across the Plasma Membrane in Activation of the EGF Receptor.' 'Cell(Cambridge,Mass.)' 152 543 556 2013 CELLB5 US 0092-8674 0998 ? 23374349 10.1016/j.cell.2012.12.032 1 'Architecture and Membrane Interactions of the EGF Receptor.' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Endres, N.F.' 1 primary 'Das, R.' 2 primary 'Smith, A.W.' 3 primary 'Arkhipov, A.' 4 primary 'Kovacs, E.' 5 primary 'Huang, Y.' 6 primary 'Pelton, J.G.' 7 primary 'Shan, Y.' 8 primary 'Shaw, D.E.' 9 primary 'Wemmer, D.E.' 10 primary 'Groves, J.T.' 11 primary 'Kuriyan, J.' 12 1 'Endres, N.F.' 13 1 'Das, R.' 14 1 'Smith, A.' 15 1 'Arkhipov, A.' 16 1 'Kovacs, E.' 17 1 'Huang, Y.' 18 1 'Pelton, J.G.' 19 1 'Shan, Y.' 20 1 'Shaw, D.E.' 21 1 'Wemmer, D.E.' 22 1 'Groves, J.T.' 23 1 'Kuriyan, J.' 24 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Epidermal growth factor receptor' _entity.formula_weight 6779.251 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation 'M9L (M650 in UNP P00533), M27I (M668 in UNP P00533)' _entity.pdbx_fragment 'EGFR Transmembrane-Juxtamembrane segment, UNP residues 642-697' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Proto-oncogene c-ErbB-1, Receptor tyrosine-protein kinase erbB-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code KIPSIATGLVGALLLLLVVALGIGLFIRRRHIVRKRTLRRLLQERELVEPLTPSGEKLWS _entity_poly.pdbx_seq_one_letter_code_can KIPSIATGLVGALLLLLVVALGIGLFIRRRHIVRKRTLRRLLQERELVEPLTPSGEKLWS _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ILE n 1 3 PRO n 1 4 SER n 1 5 ILE n 1 6 ALA n 1 7 THR n 1 8 GLY n 1 9 LEU n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 LEU n 1 14 LEU n 1 15 LEU n 1 16 LEU n 1 17 LEU n 1 18 VAL n 1 19 VAL n 1 20 ALA n 1 21 LEU n 1 22 GLY n 1 23 ILE n 1 24 GLY n 1 25 LEU n 1 26 PHE n 1 27 ILE n 1 28 ARG n 1 29 ARG n 1 30 ARG n 1 31 HIS n 1 32 ILE n 1 33 VAL n 1 34 ARG n 1 35 LYS n 1 36 ARG n 1 37 THR n 1 38 LEU n 1 39 ARG n 1 40 ARG n 1 41 LEU n 1 42 LEU n 1 43 GLN n 1 44 GLU n 1 45 ARG n 1 46 GLU n 1 47 LEU n 1 48 VAL n 1 49 GLU n 1 50 PRO n 1 51 LEU n 1 52 THR n 1 53 PRO n 1 54 SER n 1 55 GLY n 1 56 GLU n 1 57 LYS n 1 58 LEU n 1 59 TRP n 1 60 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EGFR, ERBB, ERBB1, HER1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMMHb _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code EGFR_HUMAN _struct_ref.pdbx_db_accession P00533 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRKRTLRRLLQERELVEPLTPSGE _struct_ref.pdbx_align_begin 642 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M20 A 1 ? 56 ? P00533 642 ? 697 ? 1 56 2 1 2M20 B 1 ? 56 ? P00533 642 ? 697 ? 61 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2M20 LEU A 9 ? UNP P00533 MET 650 'ENGINEERED MUTATION' 9 1 1 2M20 ILE A 27 ? UNP P00533 MET 668 'ENGINEERED MUTATION' 27 2 1 2M20 LYS A 57 ? UNP P00533 ? ? 'EXPRESSION TAG' 57 3 1 2M20 LEU A 58 ? UNP P00533 ? ? 'EXPRESSION TAG' 58 4 1 2M20 TRP A 59 ? UNP P00533 ? ? 'EXPRESSION TAG' 59 5 1 2M20 SER A 60 ? UNP P00533 ? ? 'EXPRESSION TAG' 60 6 2 2M20 LEU B 9 ? UNP P00533 MET 650 'ENGINEERED MUTATION' 69 7 2 2M20 ILE B 27 ? UNP P00533 MET 668 'ENGINEERED MUTATION' 87 8 2 2M20 LYS B 57 ? UNP P00533 ? ? 'EXPRESSION TAG' 117 9 2 2M20 LEU B 58 ? UNP P00533 ? ? 'EXPRESSION TAG' 118 10 2 2M20 TRP B 59 ? UNP P00533 ? ? 'EXPRESSION TAG' 119 11 2 2M20 SER B 60 ? UNP P00533 ? ? 'EXPRESSION TAG' 120 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-15N HSQC' 1 2 2 '2D 1H-13C HSQC' 1 3 1 '3D HNCO' 1 4 1 '3D HNCA' 1 5 1 '3D HNCACB' 1 6 1 '3D HN(CO)CA' 1 7 2 '3D 1H-15N NOESY' 1 8 2 '3D 1H-13C NOESY' 1 9 2 '3D HCCH-COSY' 1 10 2 '3D HCCH-TOCSY' 1 11 3 '3D 15N-13C F1 filtered/F3 edited NOESY-HSQC' 1 12 1 '2D 1H-15N TROSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 312 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.300 mM [U-100% 13C; U-100% 15N; U-80% 2H] EGFR TM-JM, 50 mM MES, 5 mM TCEP, 1 mM EDTA, 0.05 mM AMESF, 10 % [U-2H] D2O, 0.02 % sodium azide, 9.4 mM [U-99% 2H] DMPC (D54), 37.98 mM [U-99% 2H] DHPC (D22), 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.300 mM [U-100% 13C; U-100% 15N] EGFR TM-JM, 50 mM MES, 5 mM TCEP, 1 mM EDTA, 0.05 mM AMESF, 10 % [U-2H] D2O, 0.02 % sodium azide, 9.4 mM [U-99% 2H] DMPC (D54), 37.98 mM [U-99% 2H] DHPC (D22), 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.300 mM EGFR TM-JM, 50 mM MES, 5 mM TCEP, 1 mM EDTA, 0.05 mM AMESF, 10 % [U-2H] D2O, 0.02 % sodium azide, 18.8 mM [U-99% 2H] DMPC (D54), 77.86 mM [U-99% 2H] DHPC (D22), 0.300 mM EGFR TM-JM, 90% H2O/10% D2O ; 3 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker Avance-II 1 'Bruker Avance-II' 800 Bruker Avance 2 'Bruker Avance' 600 Bruker Avance 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2M20 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;1. The TM-JM dimer structure was calculated with 38 interchain NOEs (19 interchain NOE restraint per monomer). There are too few interchain NOEs to determine the configuration of the TM-JM dimer unambiguously. Therefore, we used observations from molecular dynamics simulations of the TM-JM segment in DMPC lipid bilayers (see Arkhipov et al. 2013, Cell in press; companion paper to the paper describing the analysis of the TM-JM structure in an experimental context), and selected a initial structure of the TM-JM dimer with a dimeric conformation of right handed crossing angles that was stable during the MD simulations. It was then refined using NMR restraints. 2. The secondary structure analysis suggested that the juxtamembrane -A segment has a 30% probability of helix formation. In order to model the juxtamembrane dimer we assumed that the juxtamembrane-A segment only forms a dimer when both juxtamembrane segments are helical. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M20 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M20 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN v1.3 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRDraw v3.0 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe v3.0 3 Goddard 'chemical shift assignment' SPARKY v3.114 4 Goddard 'peak picking' SPARKY v3.114 5 'Yang Shen, Frank Delaglio, Gabriel Cornilescu, and Ad Bax,' 'data analysis' TALOS+ ? 6 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS v1.3 7 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS v1.3 8 'Laskowski and MacArthur' 'data analysis' ProcheckNMR ? 9 'Bhattacharya and Montelione' 'data analysis' PSVS ? 10 'Koradi, Billeter and Wuthrich' 'data analysis' Molmol ? 11 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M20 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M20 _struct.title 'EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure.' _struct.pdbx_descriptor 'Epidermal growth factor receptor (E.C.2.7.10.1)' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M20 _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'Transmembrane, Cell Signaling, Juxtamembrane, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 3 ? ARG A 29 ? PRO A 3 ARG A 29 1 ? 27 HELX_P HELX_P2 2 ARG A 29 ? ARG A 34 ? ARG A 29 ARG A 34 1 ? 6 HELX_P HELX_P3 3 GLN A 43 ? VAL A 48 ? GLN A 43 VAL A 48 1 ? 6 HELX_P HELX_P4 4 PRO B 3 ? ARG B 29 ? PRO B 63 ARG B 89 1 ? 27 HELX_P HELX_P5 5 ARG B 29 ? ARG B 34 ? ARG B 89 ARG B 94 1 ? 6 HELX_P HELX_P6 6 GLN B 43 ? VAL B 48 ? GLN B 103 VAL B 108 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2M20 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 PHE 26 26 26 PHE PHE A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 HIS 31 31 31 HIS HIS A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 TRP 59 59 59 TRP TRP A . n A 1 60 SER 60 60 60 SER SER A . n B 1 1 LYS 1 61 61 LYS LYS B . n B 1 2 ILE 2 62 62 ILE ILE B . n B 1 3 PRO 3 63 63 PRO PRO B . n B 1 4 SER 4 64 64 SER SER B . n B 1 5 ILE 5 65 65 ILE ILE B . n B 1 6 ALA 6 66 66 ALA ALA B . n B 1 7 THR 7 67 67 THR THR B . n B 1 8 GLY 8 68 68 GLY GLY B . n B 1 9 LEU 9 69 69 LEU LEU B . n B 1 10 VAL 10 70 70 VAL VAL B . n B 1 11 GLY 11 71 71 GLY GLY B . n B 1 12 ALA 12 72 72 ALA ALA B . n B 1 13 LEU 13 73 73 LEU LEU B . n B 1 14 LEU 14 74 74 LEU LEU B . n B 1 15 LEU 15 75 75 LEU LEU B . n B 1 16 LEU 16 76 76 LEU LEU B . n B 1 17 LEU 17 77 77 LEU LEU B . n B 1 18 VAL 18 78 78 VAL VAL B . n B 1 19 VAL 19 79 79 VAL VAL B . n B 1 20 ALA 20 80 80 ALA ALA B . n B 1 21 LEU 21 81 81 LEU LEU B . n B 1 22 GLY 22 82 82 GLY GLY B . n B 1 23 ILE 23 83 83 ILE ILE B . n B 1 24 GLY 24 84 84 GLY GLY B . n B 1 25 LEU 25 85 85 LEU LEU B . n B 1 26 PHE 26 86 86 PHE PHE B . n B 1 27 ILE 27 87 87 ILE ILE B . n B 1 28 ARG 28 88 88 ARG ARG B . n B 1 29 ARG 29 89 89 ARG ARG B . n B 1 30 ARG 30 90 90 ARG ARG B . n B 1 31 HIS 31 91 91 HIS HIS B . n B 1 32 ILE 32 92 92 ILE ILE B . n B 1 33 VAL 33 93 93 VAL VAL B . n B 1 34 ARG 34 94 94 ARG ARG B . n B 1 35 LYS 35 95 95 LYS LYS B . n B 1 36 ARG 36 96 96 ARG ARG B . n B 1 37 THR 37 97 97 THR THR B . n B 1 38 LEU 38 98 98 LEU LEU B . n B 1 39 ARG 39 99 99 ARG ARG B . n B 1 40 ARG 40 100 100 ARG ARG B . n B 1 41 LEU 41 101 101 LEU LEU B . n B 1 42 LEU 42 102 102 LEU LEU B . n B 1 43 GLN 43 103 103 GLN GLN B . n B 1 44 GLU 44 104 104 GLU GLU B . n B 1 45 ARG 45 105 105 ARG ARG B . n B 1 46 GLU 46 106 106 GLU GLU B . n B 1 47 LEU 47 107 107 LEU LEU B . n B 1 48 VAL 48 108 108 VAL VAL B . n B 1 49 GLU 49 109 109 GLU GLU B . n B 1 50 PRO 50 110 110 PRO PRO B . n B 1 51 LEU 51 111 111 LEU LEU B . n B 1 52 THR 52 112 112 THR THR B . n B 1 53 PRO 53 113 113 PRO PRO B . n B 1 54 SER 54 114 114 SER SER B . n B 1 55 GLY 55 115 115 GLY GLY B . n B 1 56 GLU 56 116 116 GLU GLU B . n B 1 57 LYS 57 117 117 LYS LYS B . n B 1 58 LEU 58 118 118 LEU LEU B . n B 1 59 TRP 59 119 119 TRP TRP B . n B 1 60 SER 60 120 120 SER SER B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1476.1 ? 1 MORE -10.6 ? 1 'SSA (A^2)' 12144.7 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'EGFR TM-JM-1' 0.300 ? mM '[U-100% 13C; U-100% 15N; U-80% 2H]' 1 MES-2 50 ? mM ? 1 TCEP-3 5 ? mM ? 1 EDTA-4 1 ? mM ? 1 AMESF-5 0.05 ? mM ? 1 D2O-6 10 ? % '[U-2H]' 1 'sodium azide-7' 0.02 ? % ? 1 'DMPC (D54)-8' 9.4 ? mM '[U-99% 2H]' 1 'DHPC (D22)-9' 37.98 ? mM '[U-99% 2H]' 1 'EGFR TM-JM-10' 0.300 ? mM '[U-100% 13C; U-100% 15N]' 2 MES-11 50 ? mM ? 2 TCEP-12 5 ? mM ? 2 EDTA-13 1 ? mM ? 2 AMESF-14 0.05 ? mM ? 2 D2O-15 10 ? % '[U-2H]' 2 'sodium azide-16' 0.02 ? % ? 2 'DMPC (D54)-17' 9.4 ? mM '[U-99% 2H]' 2 'DHPC (D22)-18' 37.98 ? mM '[U-99% 2H]' 2 'EGFR TM-JM-19' 0.300 ? mM ? 3 MES-20 50 ? mM ? 3 TCEP-21 5 ? mM ? 3 EDTA-22 1 ? mM ? 3 AMESF-23 0.05 ? mM ? 3 D2O-24 10 ? % '[U-2H]' 3 'sodium azide-25' 0.02 ? % ? 3 'DMPC (D54)-26' 18.8 ? mM '[U-99% 2H]' 3 'DHPC (D22)-27' 77.86 ? mM '[U-99% 2H]' 3 'EGFR TM-JM-28' 0.300 ? mM ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M20 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 36 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 580 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count 38 _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 22 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 92 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 92 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B LEU 98 ? ? HB2 B LEU 102 ? ? 1.54 2 1 O A LEU 38 ? ? HB2 A LEU 42 ? ? 1.54 3 2 O A LEU 38 ? ? H A LEU 42 ? ? 1.27 4 2 O B LEU 98 ? ? H B LEU 102 ? ? 1.27 5 2 O A LEU 38 ? ? N A LEU 42 ? ? 2.00 6 2 O B LEU 98 ? ? N B LEU 102 ? ? 2.00 7 3 O B LEU 98 ? ? HB2 B LEU 102 ? ? 1.50 8 3 O A LEU 38 ? ? HB2 A LEU 42 ? ? 1.50 9 4 O A LEU 38 ? ? HB2 A LEU 42 ? ? 1.56 10 4 O B LEU 98 ? ? HB2 B LEU 102 ? ? 1.56 11 5 O A LEU 38 ? ? HB2 A LEU 42 ? ? 1.51 12 5 O B LEU 98 ? ? HB2 B LEU 102 ? ? 1.51 13 6 O A LEU 38 ? ? H A LEU 42 ? ? 1.35 14 6 O B LEU 98 ? ? H B LEU 102 ? ? 1.35 15 6 O A LEU 38 ? ? N A LEU 42 ? ? 2.04 16 6 O B LEU 98 ? ? N B LEU 102 ? ? 2.04 17 7 O A LEU 38 ? ? H A LEU 42 ? ? 1.31 18 7 O B LEU 98 ? ? H B LEU 102 ? ? 1.31 19 7 O A LEU 38 ? ? N A LEU 42 ? ? 2.01 20 7 O B LEU 98 ? ? N B LEU 102 ? ? 2.01 21 8 O B LEU 98 ? ? H B LEU 102 ? ? 1.32 22 8 O A LEU 38 ? ? H A LEU 42 ? ? 1.32 23 8 O B LEU 98 ? ? N B LEU 102 ? ? 2.02 24 8 O A LEU 38 ? ? N A LEU 42 ? ? 2.02 25 9 O B LEU 98 ? ? H B LEU 102 ? ? 1.29 26 9 O A LEU 38 ? ? H A LEU 42 ? ? 1.29 27 9 O B LEU 98 ? ? N B LEU 102 ? ? 1.98 28 9 O A LEU 38 ? ? N A LEU 42 ? ? 1.98 29 10 O A LEU 38 ? ? H A LEU 42 ? ? 1.30 30 10 O B LEU 98 ? ? H B LEU 102 ? ? 1.30 31 10 O A LEU 38 ? ? N A LEU 42 ? ? 1.99 32 10 O B LEU 98 ? ? N B LEU 102 ? ? 1.99 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 47 ? ? -146.50 27.38 2 1 LEU B 107 ? ? -146.43 27.34 3 2 LYS A 35 ? ? -132.05 -43.85 4 2 LYS B 95 ? ? -132.01 -43.90 5 3 LEU A 47 ? ? -150.13 27.17 6 3 LEU B 107 ? ? -150.06 27.22 7 5 ARG A 36 ? ? -88.55 34.89 8 5 ARG B 96 ? ? -88.58 35.05 9 6 TRP A 59 ? ? 62.23 121.89 10 6 TRP B 119 ? ? 62.35 121.79 11 7 LYS A 35 ? ? -130.78 -45.27 12 7 LYS B 95 ? ? -130.73 -45.10 13 10 GLU A 56 ? ? 63.37 127.66 14 10 GLU B 116 ? ? 63.51 127.57 #