HEADER DNA BINDING PROTEIN 15-JAN-13 2M3A TITLE NMR SOLUTION STRUCTURE OF A MYB-LIKE DNA BINDING DOMAIN OF KNL-2 FROM TITLE 2 C. ELEGANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KNL-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYB-LIKE DOMAIN, UNP RESIDUES 617-678; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: KNL-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1 KEYWDS MYB-LIKE DOMAIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.J.OSBORNE,L.B.BORDEN REVDAT 2 14-JUN-23 2M3A 1 SEQADV REVDAT 1 02-APR-14 2M3A 0 JRNL AUTH V.DE ROP,J.F.DORN,M.J.OSBORNE,J.BOISVERT,J.RYAN,A.PADEGANEH, JRNL AUTH 2 C.MOEVUS,L.B.BORDEN,A.S.MADDOX,P.S.MADDOX JRNL TITL CENTROMERE EPIGENOME STABILITY IS MEDIATED BY STRUCTURAL JRNL TITL 2 RECOGNITION BY THE CENTROMERE LICENSING COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3,0, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000103154. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.2 MM [U-99% 13C; U-99% 15N] REMARK 210 KNL2, 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 5 MM REMARK 210 MAGNESIUM SULPHATE, 90% H2O/10% REMARK 210 D2O; 0.2 MM [U-99% 13C; U-99% REMARK 210 15N] KNL2, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 5 MM MAGNESIUM REMARK 210 SULPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, NMRPIPE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 2 -176.53 -69.77 REMARK 500 1 SER A 5 102.80 -175.87 REMARK 500 1 ALA A 7 88.43 -171.81 REMARK 500 1 LYS A 8 -170.68 59.56 REMARK 500 1 LYS A 28 73.68 56.13 REMARK 500 1 ALA A 31 79.37 53.29 REMARK 500 1 GLU A 50 157.64 -49.49 REMARK 500 2 PRO A 2 -171.06 -69.78 REMARK 500 2 LEU A 3 97.58 62.05 REMARK 500 2 VAL A 6 82.69 52.81 REMARK 500 2 LYS A 28 73.79 56.75 REMARK 500 2 ALA A 31 80.58 58.51 REMARK 500 2 GLU A 50 157.55 -49.68 REMARK 500 3 LEU A 3 100.22 -162.98 REMARK 500 3 LYS A 8 175.67 -55.54 REMARK 500 3 ALA A 31 80.99 63.81 REMARK 500 3 GLU A 46 30.10 -98.08 REMARK 500 3 GLU A 50 159.17 -46.50 REMARK 500 4 LEU A 3 99.28 61.27 REMARK 500 4 LYS A 28 73.78 59.67 REMARK 500 4 ALA A 31 77.69 60.20 REMARK 500 4 GLU A 50 158.88 -46.24 REMARK 500 5 SER A 5 59.62 -112.61 REMARK 500 5 VAL A 6 71.42 62.30 REMARK 500 5 ALA A 7 -173.80 54.13 REMARK 500 5 LYS A 8 -74.89 -81.01 REMARK 500 5 LYS A 9 25.45 -143.23 REMARK 500 5 LYS A 28 71.21 55.00 REMARK 500 5 ALA A 31 74.59 58.57 REMARK 500 5 GLU A 50 158.79 -47.09 REMARK 500 6 PRO A 2 96.36 -69.75 REMARK 500 6 VAL A 6 -176.72 -67.74 REMARK 500 6 ALA A 7 33.58 -98.00 REMARK 500 6 LYS A 9 165.44 63.12 REMARK 500 6 LYS A 28 73.84 56.21 REMARK 500 6 ALA A 31 76.76 54.74 REMARK 500 6 SER A 32 134.90 -179.39 REMARK 500 6 GLU A 50 158.99 -46.44 REMARK 500 7 ALA A 7 -178.44 60.60 REMARK 500 7 LYS A 8 -174.41 54.77 REMARK 500 7 LYS A 28 74.12 49.65 REMARK 500 7 ALA A 31 87.74 175.85 REMARK 500 7 GLU A 50 158.59 -48.67 REMARK 500 8 LYS A 28 73.64 54.66 REMARK 500 8 ALA A 31 72.42 63.92 REMARK 500 8 GLU A 50 158.41 -47.58 REMARK 500 9 PRO A 2 -174.65 -69.74 REMARK 500 9 SER A 5 176.78 62.14 REMARK 500 9 LYS A 28 73.83 58.60 REMARK 500 9 ALA A 31 80.66 54.63 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18951 RELATED DB: BMRB DBREF 2M3A A 6 67 UNP O44548 O44548_CAEEL 617 678 SEQADV 2M3A GLY A 1 UNP O44548 EXPRESSION TAG SEQADV 2M3A PRO A 2 UNP O44548 EXPRESSION TAG SEQADV 2M3A LEU A 3 UNP O44548 EXPRESSION TAG SEQADV 2M3A GLY A 4 UNP O44548 EXPRESSION TAG SEQADV 2M3A SER A 5 UNP O44548 EXPRESSION TAG SEQRES 1 A 67 GLY PRO LEU GLY SER VAL ALA LYS LYS ILE THR TRP ARG SEQRES 2 A 67 LYS GLN ASP LEU ASP ARG LEU LYS ARG VAL ILE ALA LEU SEQRES 3 A 67 LYS LYS PRO SER ALA SER ASP ALA ASP TRP THR GLU VAL SEQRES 4 A 67 LEU ARG LEU LEU ALA LYS GLU GLY VAL VAL GLU PRO GLU SEQRES 5 A 67 VAL VAL ARG GLN ILE ALA ILE THR ARG LEU LYS TRP VAL SEQRES 6 A 67 GLU PRO HELIX 1 1 ARG A 13 LYS A 28 1 16 HELIX 2 2 SER A 32 ALA A 44 1 13 HELIX 3 3 LYS A 45 GLY A 47 5 3 HELIX 4 4 GLU A 50 LEU A 62 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1