HEADER TRANSCRIPTION REGULATOR 28-JAN-13 2M41 TITLE SOLUTION STRUCTURE OF THE AXH DOMAIN OF ATAXIN-1 IN COMPLEX WITH TITLE 2 LIGAND PEPTIDE FROM CAPICUA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN CAPICUA HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ATAXIN-1-BINDING LINEAR MOTIF (UNP 34-48); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ATAXIN-1; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: AXH DOMAIN, NATIVE RESIDUES A567-K689; COMPND 10 SYNONYM: SPINOCEREBELLAR ATAXIA TYPE 1 PROTEIN; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: ATXN1, ATX1, SCA1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PET24D KEYWDS PROTEIN/PROTEIN, ATAXIN-1 AXH-CIC COMPLEX, TRANSCRIPTION REGULATOR EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR C.DE CHIARA,G.KELLY,A.PASTORE REVDAT 3 15-MAY-24 2M41 1 REMARK REVDAT 2 14-JUN-23 2M41 1 REMARK SEQADV REVDAT 1 11-DEC-13 2M41 0 JRNL AUTH C.DE CHIARA,R.P.MENON,G.KELLY,A.PASTORE JRNL TITL PROTEIN-PROTEIN INTERACTIONS AS A STRATEGY TOWARDS JRNL TITL 2 PROTEIN-SPECIFIC DRUG DESIGN: THE EXAMPLE OF ATAXIN-1. JRNL REF PLOS ONE V. 8 76456 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24155902 JRNL DOI 10.1371/JOURNAL.PONE.0076456 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DE CHIARA,G.KELLY,A.PASTORE REMARK 1 TITL 1H,13C, AND 15N RESONANCE ASSIGNMENT OF THE ATAXIN-1 AXH REMARK 1 TITL 2 DOMAIN IN COMPLEX WITH CIC LIGAND PEPTIDE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103181. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 ATAXIN-1 AXH DOMAIN, 0.6 MM CIC REMARK 210 POLYPEPTIDE, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-100% 15N] ATAXIN-1 AXH REMARK 210 DOMAIN, 0.6 MM CIC POLYPEPTIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D HCCH- REMARK 210 TOCSY; 3D CBCA(CO)NH; 3D HNCA; REMARK 210 3D HNCO; 3D 15N-13C-FILTERED, REMARK 210 15N-13C-EDITED NOESY; 2D 15N-13C- REMARK 210 REJECTED NOESY; 3D C(CO)NH; 3D REMARK 210 HNCACB REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, XEASY, NMRPIPE, REMARK 210 NMRDRAW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLY B 564 REMARK 465 ALA B 565 REMARK 465 MET B 566 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 44 40.99 -79.99 REMARK 500 1 ALA A 45 159.03 71.73 REMARK 500 1 PRO A 46 102.74 -51.03 REMARK 500 1 PHE B 575 -18.09 67.33 REMARK 500 1 HIS B 623 -40.48 72.18 REMARK 500 1 CYS B 662 83.83 -157.83 REMARK 500 2 HIS A 38 49.78 -73.69 REMARK 500 2 THR B 570 -5.13 71.51 REMARK 500 2 TYR B 574 -86.27 -62.40 REMARK 500 2 PRO B 625 108.57 -47.13 REMARK 500 2 PHE B 654 -100.50 -44.97 REMARK 500 2 GLN B 656 -57.25 -130.09 REMARK 500 2 ASP B 671 14.64 55.31 REMARK 500 3 PRO A 46 97.52 -23.25 REMARK 500 3 TYR B 574 -86.26 -61.91 REMARK 500 3 CYS B 662 82.28 -157.11 REMARK 500 4 LEU A 40 1.20 -153.05 REMARK 500 4 LEU A 44 -63.66 60.13 REMARK 500 4 PRO A 46 93.81 -58.62 REMARK 500 4 PHE B 575 -21.18 69.43 REMARK 500 5 ALA A 45 157.91 76.45 REMARK 500 5 PRO B 569 82.43 -65.94 REMARK 500 5 PRO B 572 151.21 -47.91 REMARK 500 5 TYR B 574 -97.87 -65.35 REMARK 500 5 PHE B 654 72.21 -67.37 REMARK 500 5 CYS B 662 87.73 -159.32 REMARK 500 5 ASP B 671 19.95 56.29 REMARK 500 6 SER A 39 -61.79 -139.63 REMARK 500 6 PRO A 46 103.96 -41.12 REMARK 500 6 SER A 47 -78.35 -80.32 REMARK 500 6 PRO B 569 35.98 -80.64 REMARK 500 6 THR B 570 -170.10 49.07 REMARK 500 6 TYR B 574 -76.46 -56.81 REMARK 500 6 PHE B 654 83.33 -57.51 REMARK 500 6 CYS B 662 84.69 -154.58 REMARK 500 6 ASP B 671 18.59 57.72 REMARK 500 7 LEU A 44 40.30 -77.46 REMARK 500 7 ALA A 45 159.48 75.51 REMARK 500 7 PRO A 46 99.21 -59.11 REMARK 500 7 THR B 570 150.63 71.17 REMARK 500 7 TYR B 574 -84.66 -73.83 REMARK 500 7 SER B 606 79.29 55.63 REMARK 500 7 ASN B 607 62.90 -106.07 REMARK 500 7 HIS B 623 -41.59 71.38 REMARK 500 7 PHE B 654 81.74 -57.83 REMARK 500 7 CYS B 662 87.79 -159.26 REMARK 500 8 LEU A 40 -27.21 -145.34 REMARK 500 8 ALA A 45 154.15 164.43 REMARK 500 8 PRO A 46 97.31 -57.13 REMARK 500 8 LEU B 571 165.14 58.56 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OA8 RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF FREE ATAXIN-1 AXH DOMAIN REMARK 900 RELATED ID: 1V06 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HOMOLOGOUS AXH DOMAIN FROM TRANSCRIPTION REMARK 900 FACTOR HBP1 REMARK 900 RELATED ID: 18982 RELATED DB: BMRB DBREF 2M41 A 34 48 UNP Q96RK0 CIC_HUMAN 34 48 DBREF 2M41 B 567 689 UNP P54253 ATX1_HUMAN 566 688 SEQADV 2M41 GLY B 564 UNP P54253 EXPRESSION TAG SEQADV 2M41 ALA B 565 UNP P54253 EXPRESSION TAG SEQADV 2M41 MET B 566 UNP P54253 EXPRESSION TAG SEQRES 1 A 15 VAL PHE PRO TRP HIS SER LEU VAL PRO PHE LEU ALA PRO SEQRES 2 A 15 SER GLN SEQRES 1 B 126 GLY ALA MET ALA PRO PRO THR LEU PRO PRO TYR PHE MET SEQRES 2 B 126 LYS GLY SER ILE ILE GLN LEU ALA ASN GLY GLU LEU LYS SEQRES 3 B 126 LYS VAL GLU ASP LEU LYS THR GLU ASP PHE ILE GLN SER SEQRES 4 B 126 ALA GLU ILE SER ASN ASP LEU LYS ILE ASP SER SER THR SEQRES 5 B 126 VAL GLU ARG ILE GLU ASP SER HIS SER PRO GLY VAL ALA SEQRES 6 B 126 VAL ILE GLN PHE ALA VAL GLY GLU HIS ARG ALA GLN VAL SEQRES 7 B 126 SER VAL GLU VAL LEU VAL GLU TYR PRO PHE PHE VAL PHE SEQRES 8 B 126 GLY GLN GLY TRP SER SER CYS CYS PRO GLU ARG THR SER SEQRES 9 B 126 GLN LEU PHE ASP LEU PRO CYS SER LYS LEU SER VAL GLY SEQRES 10 B 126 ASP VAL CYS ILE SER LEU THR LEU LYS HELIX 1 1 GLU B 592 LEU B 594 5 3 HELIX 2 2 LYS B 595 SER B 606 1 12 HELIX 3 3 CYS B 662 ASP B 671 1 10 SHEET 1 A 3 PHE A 35 PRO A 36 0 SHEET 2 A 3 ILE B 580 GLN B 582 1 O GLN B 582 N PHE A 35 SHEET 3 A 3 LEU B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 SHEET 1 B 2 LEU B 609 LYS B 610 0 SHEET 2 B 2 THR B 687 LEU B 688 -1 O THR B 687 N LYS B 610 SHEET 1 C 4 ALA B 639 LEU B 646 0 SHEET 2 C 4 VAL B 627 VAL B 634 -1 N ALA B 628 O VAL B 645 SHEET 3 C 4 SER B 613 ASP B 621 -1 N ARG B 618 O GLN B 631 SHEET 4 C 4 VAL B 682 ILE B 684 -1 O CYS B 683 N SER B 614 SHEET 1 D 3 PHE B 652 VAL B 653 0 SHEET 2 D 3 GLY B 657 SER B 660 -1 O GLY B 657 N VAL B 653 SHEET 3 D 3 SER B 675 LYS B 676 1 O SER B 675 N SER B 660 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1