HEADER VIRAL PROTEIN 05-FEB-13 2M4G TITLE SOLUTION STRUCTURE OF THE CORE DOMAIN (11-85) OF THE MURINE NOROVIRUS TITLE 2 VPG PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURINE NOROVIRUS VPG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE NOROVIRUS 1; SOURCE 3 ORGANISM_TAXID: 223997; SOURCE 4 GENE: VPG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS VPG, VIRAL PROTEIN, NS5 EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.N.LEEN,R.KWOK,J.R.BIRTLEY,S.N.PRATER,P.J.SIMPSON,S.MATTHEWS, AUTHOR 2 J.MARCHANT,S.CURRY REVDAT 2 08-MAY-13 2M4G 1 JRNL REVDAT 1 27-MAR-13 2M4G 0 JRNL AUTH E.N.LEEN,K.Y.KWOK,J.R.BIRTLEY,P.J.SIMPSON,C.V.SUBBA-REDDY, JRNL AUTH 2 Y.CHAUDHRY,S.V.SOSNOVTSEV,K.Y.GREEN,S.N.PRATER,M.TONG, JRNL AUTH 3 J.C.YOUNG,L.M.CHUNG,J.MARCHANT,L.O.ROBERTS,C.C.KAO, JRNL AUTH 4 S.MATTHEWS,I.G.GOODFELLOW,S.CURRY JRNL TITL STRUCTURES OF THE COMPACT HELICAL CORE DOMAINS OF FELINE JRNL TITL 2 CALICIVIRUS AND MURINE NOROVIRUS VPG PROTEINS. JRNL REF J.VIROL. V. 87 5318 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23487472 JRNL DOI 10.1128/JVI.03151-12 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB103196. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 300; 360 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 590 UM [U-98% 13C; U-98% 15N] REMARK 210 MNV VPG 11-85, 50 MM SODIUM REMARK 210 PHOSPHATE, 300 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 710 UM [U-98% 13C; U-98% REMARK 210 15N] MNV VPG 11-85, 360 MM SODIUM REMARK 210 CHLORIDE, 0.001 W/V SODIUM AZIDE, REMARK 210 1 MM DTT, 60 MM SODIUM PHOSPHATE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D H(C)CH-TOCSY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D (H) REMARK 210 CCH-TOCSY; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HN(CA)CO; 3D REMARK 210 H(CC)(CO)NH; 3D (H)C(CCO)NH; 3D REMARK 210 (HB)CB(CGCD)HD; 3D (HB)CB(CGCDCE) REMARK 210 HE; 3D HBHA(CBCACO)NH; 3D 1H-13C REMARK 210 NOESY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TALOS, ARIA, NMRPIPE, NMRVIEW, REMARK 210 MARS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 42 H LEU A 46 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 18 -33.99 -140.68 REMARK 500 1 ARG A 19 -56.03 70.03 REMARK 500 1 ARG A 58 165.66 68.04 REMARK 500 1 ASP A 59 -66.48 71.24 REMARK 500 1 GLU A 62 122.98 74.62 REMARK 500 1 ALA A 63 44.36 71.73 REMARK 500 1 PHE A 69 29.87 -147.14 REMARK 500 2 ARG A 12 147.58 70.05 REMARK 500 2 PRO A 13 46.71 -77.74 REMARK 500 2 GLU A 62 -151.06 -148.65 REMARK 500 2 ARG A 82 59.53 -93.36 REMARK 500 3 PRO A 13 79.70 -69.97 REMARK 500 3 THR A 18 -63.76 -136.37 REMARK 500 3 GLU A 61 -71.16 -74.27 REMARK 500 3 GLU A 62 -95.63 -155.07 REMARK 500 3 ALA A 63 60.54 -113.23 REMARK 500 3 LEU A 71 -75.91 -90.57 REMARK 500 3 THR A 74 -72.08 -73.89 REMARK 500 3 ARG A 75 65.93 -150.29 REMARK 500 3 GLU A 81 68.61 60.61 REMARK 500 4 ARG A 58 -60.93 -124.87 REMARK 500 4 ASP A 59 -38.05 174.65 REMARK 500 4 GLU A 62 -168.27 -163.67 REMARK 500 4 ALA A 80 -63.30 -108.37 REMARK 500 4 GLU A 81 18.51 -148.78 REMARK 500 5 ARG A 12 147.47 70.87 REMARK 500 5 ARG A 17 93.74 68.54 REMARK 500 5 LEU A 55 -81.16 -83.03 REMARK 500 5 LEU A 56 -85.45 56.47 REMARK 500 5 ASP A 59 -92.29 55.22 REMARK 500 5 GLU A 62 -81.11 -152.12 REMARK 500 5 ALA A 63 82.25 -156.80 REMARK 500 5 ASP A 67 84.83 64.15 REMARK 500 6 PHE A 16 -71.72 -133.03 REMARK 500 6 THR A 18 -17.53 -151.99 REMARK 500 6 ARG A 19 -69.81 67.31 REMARK 500 6 ASP A 59 -81.61 69.14 REMARK 500 6 GLU A 62 116.82 72.54 REMARK 500 6 THR A 74 125.21 70.92 REMARK 500 6 ARG A 75 49.75 -77.44 REMARK 500 6 ARG A 82 58.43 -91.63 REMARK 500 7 PRO A 13 39.03 -79.38 REMARK 500 7 PHE A 16 82.49 -169.38 REMARK 500 7 THR A 22 -179.15 -68.19 REMARK 500 7 LEU A 56 -78.13 -70.31 REMARK 500 7 GLU A 57 46.67 -165.80 REMARK 500 7 GLU A 61 -71.77 -85.40 REMARK 500 7 GLU A 62 -154.24 -155.99 REMARK 500 7 ASP A 67 -56.59 70.62 REMARK 500 7 SER A 77 34.60 -78.72 REMARK 500 REMARK 500 THIS ENTRY HAS 149 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19002 RELATED DB: BMRB DBREF 2M4G A 11 85 UNP Q80J95 Q80J95_9CALI 881 955 SEQRES 1 A 75 GLY ARG PRO GLY VAL PHE ARG THR ARG GLY LEU THR ASP SEQRES 2 A 75 GLU GLU TYR ASP GLU PHE LYS LYS ARG ARG GLU SER ARG SEQRES 3 A 75 GLY GLY LYS TYR SER ILE ASP ASP TYR LEU ALA ASP ARG SEQRES 4 A 75 GLU ARG GLU GLU GLU LEU LEU GLU ARG ASP GLU GLU GLU SEQRES 5 A 75 ALA ILE PHE GLY ASP GLY PHE GLY LEU LYS ALA THR ARG SEQRES 6 A 75 ARG SER ARG LYS ALA GLU ARG ALA LYS LEU HELIX 1 1 THR A 22 ARG A 36 1 15 HELIX 2 2 SER A 41 GLU A 53 1 13 HELIX 3 3 PHE A 69 ALA A 73 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1