HEADER IMMUNE SYSTEM 25-FEB-13 2M5H TITLE NMR STRUCTURE NOTE: SOLUTION STRUCTURE OF MONOMERIC HUMAN FAM96A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIP18 FAMILY PROTEIN FAM96A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 28-160; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAM96A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS FAM96A, DUF59, 3D DOMAIN SWAPPING, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.OUYANG,B.XIA REVDAT 2 01-MAY-24 2M5H 1 REMARK SEQADV REVDAT 1 25-SEP-13 2M5H 0 JRNL AUTH B.OUYANG,L.WANG,S.WAN,Y.LUO,L.WANG,J.LIN,B.XIA JRNL TITL SOLUTION STRUCTURE OF MONOMERIC HUMAN FAM96A JRNL REF J.BIOMOL.NMR V. 56 387 2013 JRNL REFN ISSN 0925-2738 JRNL PMID 23793605 JRNL DOI 10.1007/S10858-013-9746-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9.0, DYANA 2.1 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN (AMBER), GUNTERT, BRAUN REMARK 3 AND WUTHRICH (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103233. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% 15N] REMARK 210 FAM96A-1, 50 MM SODIUM PHOSPHATE- REMARK 210 2, 50 MM SODIUM CHLORIDE-3, 1 MM REMARK 210 EDTA-4, 50 MM DTT-5, 50 MM ARG-6, REMARK 210 50 MM GLU-7, 5 % D2O-8, 95 % REMARK 210 H2O-9, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-COSY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, SANE REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 3 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 5 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 6 ARG A 48 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 9 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 9 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 9 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 10 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 10 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 11 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 149 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 149 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 14 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 14 ARG A 45 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 15 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 16 ARG A 82 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 33 48.81 -91.45 REMARK 500 1 PRO A 88 49.42 -81.55 REMARK 500 1 PHE A 110 -165.78 49.60 REMARK 500 1 THR A 122 -80.60 -80.09 REMARK 500 1 HIS A 123 28.61 -165.82 REMARK 500 1 SER A 124 -50.68 -175.17 REMARK 500 1 GLN A 161 -70.16 -157.22 REMARK 500 1 GLU A 163 39.98 -73.01 REMARK 500 2 MET A 33 45.64 -78.47 REMARK 500 2 HIS A 123 66.10 -162.56 REMARK 500 2 ASP A 160 -178.23 -177.39 REMARK 500 2 LEU A 162 -40.60 70.54 REMARK 500 2 HIS A 164 -55.97 -159.66 REMARK 500 3 ILE A 32 142.09 70.21 REMARK 500 3 LEU A 108 58.95 -140.65 REMARK 500 3 LYS A 111 48.97 -74.14 REMARK 500 3 SER A 119 -169.20 -166.98 REMARK 500 3 GLU A 120 151.31 91.33 REMARK 500 3 SER A 124 -35.42 75.85 REMARK 500 3 GLU A 163 36.64 -80.88 REMARK 500 4 ILE A 32 -129.75 -155.71 REMARK 500 4 PRO A 109 -109.85 -79.90 REMARK 500 4 PHE A 110 -113.23 56.18 REMARK 500 4 THR A 122 -152.75 -140.21 REMARK 500 4 SER A 124 31.62 99.51 REMARK 500 4 ASP A 160 -53.96 -168.73 REMARK 500 4 GLN A 161 -73.77 -86.59 REMARK 500 5 MET A 33 35.04 -71.93 REMARK 500 5 LYS A 111 30.84 -72.60 REMARK 500 5 GLU A 120 -31.42 -132.52 REMARK 500 5 HIS A 123 -34.41 71.46 REMARK 500 5 GLN A 161 -84.50 -148.47 REMARK 500 5 LEU A 162 -38.55 72.00 REMARK 500 6 GLU A 60 -13.75 67.80 REMARK 500 6 CYS A 90 1.20 -69.16 REMARK 500 6 LEU A 92 -47.58 -139.18 REMARK 500 6 SER A 119 -19.83 65.66 REMARK 500 6 HIS A 123 41.66 -74.02 REMARK 500 6 SER A 124 -21.18 73.61 REMARK 500 6 PRO A 159 22.93 -76.18 REMARK 500 6 LEU A 162 40.87 -82.90 REMARK 500 7 MET A 33 46.80 -79.40 REMARK 500 7 GLU A 120 -23.63 -154.74 REMARK 500 7 GLN A 161 -78.79 -152.76 REMARK 500 7 LEU A 162 -42.58 74.38 REMARK 500 7 GLU A 163 -42.38 71.98 REMARK 500 8 CYS A 90 174.75 74.13 REMARK 500 8 HIS A 123 -144.37 -87.12 REMARK 500 8 PRO A 159 29.47 -76.18 REMARK 500 9 ILE A 32 112.39 78.17 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 5 ARG A 48 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18548 RELATED DB: BMRB REMARK 900 ASSIGNMENTS DBREF 2M5H A 28 160 UNP Q9H5X1 FA96A_HUMAN 28 160 SEQADV 2M5H MET A 27 UNP Q9H5X1 EXPRESSION TAG SEQADV 2M5H GLN A 161 UNP Q9H5X1 EXPRESSION TAG SEQADV 2M5H LEU A 162 UNP Q9H5X1 EXPRESSION TAG SEQADV 2M5H GLU A 163 UNP Q9H5X1 EXPRESSION TAG SEQADV 2M5H HIS A 164 UNP Q9H5X1 EXPRESSION TAG SEQADV 2M5H HIS A 165 UNP Q9H5X1 EXPRESSION TAG SEQRES 1 A 139 MET ARG GLN PRO ARG ILE MET GLU GLU LYS ALA LEU GLU SEQRES 2 A 139 VAL TYR ASP LEU ILE ARG THR ILE ARG ASP PRO GLU LYS SEQRES 3 A 139 PRO ASN THR LEU GLU GLU LEU GLU VAL VAL SER GLU SER SEQRES 4 A 139 CYS VAL GLU VAL GLN GLU ILE ASN GLU GLU GLU TYR LEU SEQRES 5 A 139 VAL ILE ILE ARG PHE THR PRO THR VAL PRO HIS CYS SER SEQRES 6 A 139 LEU ALA THR LEU ILE GLY LEU CYS LEU ARG VAL LYS LEU SEQRES 7 A 139 GLN ARG CYS LEU PRO PHE LYS HIS LYS LEU GLU ILE TYR SEQRES 8 A 139 ILE SER GLU GLY THR HIS SER THR GLU GLU ASP ILE ASN SEQRES 9 A 139 LYS GLN ILE ASN ASP LYS GLU ARG VAL ALA ALA ALA MET SEQRES 10 A 139 GLU ASN PRO ASN LEU ARG GLU ILE VAL GLU GLN CYS VAL SEQRES 11 A 139 LEU GLU PRO ASP GLN LEU GLU HIS HIS HELIX 1 1 MET A 33 THR A 46 1 14 HELIX 2 2 SER A 63 SER A 65 5 3 HELIX 3 3 HIS A 89 LEU A 108 1 20 HELIX 4 4 SER A 124 ASP A 135 1 12 HELIX 5 5 ASP A 135 ASN A 145 1 11 HELIX 6 6 ASN A 145 LEU A 157 1 13 SHEET 1 A 3 VAL A 67 ASN A 73 0 SHEET 2 A 3 GLU A 76 PHE A 83 -1 O ILE A 80 N GLU A 68 SHEET 3 A 3 LYS A 111 ILE A 118 1 O LYS A 113 N VAL A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1