HEADER SIGNALING PROTEIN 26-FEB-13 2M5J TITLE SOLUTION STRUCTURE OF THE PERIPLASMIC SIGNALING DOMAIN OF HASR, A TITLE 2 TONB-DEPENDENT OUTER MEMBRANE HEME TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HASR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 42-146; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_COMMON: SERRATIA MARCESCENS; SOURCE 4 ORGANISM_TAXID: 615; SOURCE 5 GENE: HASR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET41 KEYWDS SIGNALING DOMAIN, TONB DEPENDENT TRANSPORTER, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR I.MALKI,G.CARDOSO DE AMORIM,A.PROCHNICKA-CHALUFOUR,C.SIMENEL, AUTHOR 2 M.DELEPIERRE,N.IZADI-PRUNEYRE REVDAT 4 15-MAY-24 2M5J 1 REMARK REVDAT 3 14-JUN-23 2M5J 1 REMARK SEQADV REVDAT 2 23-APR-14 2M5J 1 JRNL REVDAT 1 05-MAR-14 2M5J 0 JRNL AUTH I.MALKI,C.SIMENEL,H.WOJTOWICZ,G.CARDOSO DE AMORIM, JRNL AUTH 2 A.PROCHNICKA-CHALUFOUR,S.HOOS,B.RAYNAL,P.ENGLAND, JRNL AUTH 3 A.CHAFFOTTE,M.DELEPIERRE,P.DELEPELAIRE,N.IZADI-PRUNEYRE JRNL TITL INTERACTION OF A PARTIALLY DISORDERED ANTISIGMA FACTOR WITH JRNL TITL 2 ITS PARTNER, THE SIGNALING DOMAIN OF THE TONB-DEPENDENT JRNL TITL 3 TRANSPORTER HASR JRNL REF PLOS ONE V. 9 89502 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24727671 JRNL DOI 10.1371/JOURNAL.PONE.0089502 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CCPNMR ANALYSIS 2.15, ARIA 2.3, CNS REMARK 3 AUTHORS : CCPN (CCPNMR ANALYSIS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA), BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103235. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 HASR_N-TERMINAL_PERIPLASMIC_SIGNALING_DOMAIN-1, 50 MM SODIUM REMARK 210 PHOSPHATE-2, 50 MM NACL-3, 85% H2O/15% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 2D HBCBCGCDHD; 2D REMARK 210 HBCBCGCDCEHE; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, ARIA 2.3 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 41 -61.23 -121.42 REMARK 500 1 ASP A 46 136.63 -36.16 REMARK 500 1 ALA A 52 89.42 -69.52 REMARK 500 1 PRO A 71 98.15 -64.35 REMARK 500 1 LEU A 97 -169.90 -109.25 REMARK 500 1 ALA A 98 -53.91 73.63 REMARK 500 2 GLU A 42 89.19 -68.20 REMARK 500 2 PRO A 71 99.29 -58.44 REMARK 500 2 THR A 89 106.78 -58.57 REMARK 500 2 ASN A 91 -49.37 -130.20 REMARK 500 2 ALA A 98 -49.62 74.80 REMARK 500 2 LEU A 105 -70.06 -102.85 REMARK 500 3 ASP A 41 -85.72 -114.98 REMARK 500 3 ALA A 52 89.96 -66.80 REMARK 500 3 LEU A 105 -40.74 74.08 REMARK 500 4 ASP A 41 -69.11 -125.93 REMARK 500 4 THR A 89 97.85 -69.05 REMARK 500 4 LEU A 97 -33.12 157.02 REMARK 500 4 ASN A 110 -73.95 -97.09 REMARK 500 5 ALA A 11 -79.23 69.11 REMARK 500 5 PRO A 71 97.87 -63.35 REMARK 500 5 PRO A 88 -146.31 -69.30 REMARK 500 5 ASP A 100 -70.17 -98.24 REMARK 500 5 ASN A 111 49.06 -85.83 REMARK 500 6 ASP A 41 -147.60 -94.36 REMARK 500 6 VAL A 43 -165.23 -129.40 REMARK 500 6 MET A 57 -165.53 -167.15 REMARK 500 6 ILE A 67 -65.65 -90.21 REMARK 500 6 LEU A 105 -32.67 178.70 REMARK 500 7 ALA A 11 84.17 66.84 REMARK 500 7 ASP A 41 -70.60 -82.36 REMARK 500 7 PRO A 78 9.40 -68.11 REMARK 500 8 MET A 7 -62.19 -128.06 REMARK 500 8 ILE A 67 -64.80 -90.46 REMARK 500 8 PRO A 71 97.37 -64.01 REMARK 500 8 ALA A 98 -42.15 74.68 REMARK 500 9 LEU A 97 38.47 -74.18 REMARK 500 10 ASP A 41 -68.06 -130.88 REMARK 500 10 ALA A 52 89.99 -68.85 REMARK 500 10 ASN A 54 100.00 -160.34 REMARK 500 10 PRO A 71 99.95 -66.53 REMARK 500 10 PRO A 88 -160.95 -68.91 REMARK 500 10 LEU A 97 -147.30 57.81 REMARK 500 10 ALA A 98 -67.27 71.65 REMARK 500 10 ASN A 110 119.24 -165.12 REMARK 500 11 ALA A 11 106.12 67.85 REMARK 500 11 ASP A 41 -61.50 -125.88 REMARK 500 11 LYS A 44 89.81 -150.57 REMARK 500 11 GLU A 60 -70.22 -50.31 REMARK 500 11 PRO A 71 97.72 -59.25 REMARK 500 REMARK 500 THIS ENTRY HAS 115 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18201 RELATED DB: BMRB REMARK 900 RELATED ID: 3CSL RELATED DB: PDB REMARK 900 RELATED ID: 3CSN RELATED DB: PDB REMARK 900 RELATED ID: 3DDR RELATED DB: PDB DBREF 2M5J A 8 112 UNP Q79AD2 Q79AD2_SERMA 42 146 SEQADV 2M5J SER A 6 UNP Q79AD2 EXPRESSION TAG SEQADV 2M5J MET A 7 UNP Q79AD2 EXPRESSION TAG SEQRES 1 A 107 SER MET ALA GLN ALA ALA GLN GLN LYS ASN PHE ASN ILE SEQRES 2 A 107 ALA ALA GLN PRO LEU GLN SER ALA MET LEU ARG PHE ALA SEQRES 3 A 107 GLU GLN ALA GLY MET GLN VAL PHE PHE ASP GLU VAL LYS SEQRES 4 A 107 LEU ASP GLY MET GLN ALA ALA ALA LEU ASN GLY SER MET SEQRES 5 A 107 SER VAL GLU GLN GLY LEU ARG ARG LEU ILE GLY GLY ASN SEQRES 6 A 107 PRO VAL ALA PHE ARG LEU GLN PRO GLN GLY GLN ILE VAL SEQRES 7 A 107 LEU SER ARG LEU PRO THR ALA ASN GLY ASP GLY GLY ALA SEQRES 8 A 107 LEU ALA LEU ASP SER LEU THR VAL LEU GLY ALA GLY GLY SEQRES 9 A 107 ASN ASN ALA HELIX 1 1 PRO A 22 GLY A 35 1 14 HELIX 2 2 SER A 58 GLY A 68 1 11 HELIX 3 3 LEU A 99 VAL A 104 1 6 SHEET 1 A 2 LYS A 14 ILE A 18 0 SHEET 2 A 2 LEU A 53 MET A 57 -1 O GLY A 55 N PHE A 16 SHEET 1 B 3 GLN A 37 PHE A 39 0 SHEET 2 B 3 GLN A 81 SER A 85 1 O ILE A 82 N GLN A 37 SHEET 3 B 3 ALA A 73 ARG A 75 -1 N ALA A 73 O SER A 85 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1