HEADER OXIDOREDUCTASE 02-MAY-13 2M80 TITLE SOLUTION STRUCTURE OF YEAST DITHIOL GLUTAREDOXIN GRX8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAREDOXIN-8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTATHIONE-DEPENDENT OXIDOREDUCTASE 8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: GRX8; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: P28 KEYWDS BIOMOLECULAR, GLUTAREDOXINS, GLUTATHIONE, GLUTATHIONE DISULFIDE, KEYWDS 2 SACCHAROMYCES CEREVISIAE, OXIDATION-REDUCTION, TERTIARY, GSH- KEYWDS 3 DEPENDENET OXIDOREDUCTASE, ELECTRON TRANSPORT, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.TANG,J.ZHANG,J.YU,J.WU,C.Z.ZHOU,Y.SHI REVDAT 2 01-MAY-24 2M80 1 REMARK SEQADV REVDAT 1 07-MAY-14 2M80 0 JRNL AUTH Y.TANG,J.ZHANG,J.YU,L.XU,J.WU,C.Z.ZHOU,Y.SHI JRNL TITL STRUCTURE-GUIDED ACTIVITY ENHANCEMENT AND CATALYTIC JRNL TITL 2 MECHANISM OF YEAST GRX8 JRNL REF BIOCHEMISTRY V. 53 2185 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24611845 JRNL DOI 10.1021/BI401293S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, PROCHECKNMR REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), LASKOWSKI AND MACARTHUR (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M80 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103324. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM SODIUM PHOSPHATE-1, 50 MM REMARK 210 SODIUM CHLORIDE-2, 2 MM DTT-3, REMARK 210 90% H2O/10% D2O; 20 MM SODIUM REMARK 210 PHOSPHATE-4, 50 MM SODIUM REMARK 210 CHLORIDE-5, 2 MM DTT-6, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D HNCO; REMARK 210 3D H(CCO)NH; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, NMRDRAW, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 -61.54 72.90 REMARK 500 1 TRP A 32 72.37 -151.72 REMARK 500 1 PRO A 61 -174.73 -62.93 REMARK 500 1 VAL A 76 -44.65 -135.15 REMARK 500 1 ARG A 79 38.62 -94.63 REMARK 500 1 LYS A 89 138.63 -174.15 REMARK 500 2 ARG A 79 43.36 -94.04 REMARK 500 2 LYS A 89 134.01 -171.84 REMARK 500 3 HIS A 23 66.42 -118.46 REMARK 500 3 ILE A 57 -144.00 -122.49 REMARK 500 3 SER A 59 33.81 -149.10 REMARK 500 3 PRO A 61 -170.80 -62.19 REMARK 500 3 ARG A 79 40.21 -93.40 REMARK 500 3 LYS A 89 137.41 -175.44 REMARK 500 3 PHE A 90 102.21 -59.15 REMARK 500 4 SER A 10 -50.63 -173.97 REMARK 500 4 TRP A 32 -41.00 -159.36 REMARK 500 4 GLN A 49 31.34 -99.69 REMARK 500 4 PRO A 61 -172.94 -68.30 REMARK 500 4 VAL A 76 -37.27 -147.92 REMARK 500 4 SER A 78 -166.19 61.34 REMARK 500 4 ARG A 79 40.54 -95.33 REMARK 500 4 LYS A 89 137.76 -173.12 REMARK 500 4 PHE A 90 108.38 -57.56 REMARK 500 5 HIS A 23 66.17 -119.72 REMARK 500 5 SER A 59 37.36 -96.06 REMARK 500 5 PRO A 61 -176.85 -62.65 REMARK 500 5 ARG A 79 38.08 -95.88 REMARK 500 5 PHE A 90 102.37 -59.74 REMARK 500 6 HIS A 23 66.27 -119.78 REMARK 500 6 TRP A 32 32.16 -153.34 REMARK 500 6 SER A 59 57.49 -140.73 REMARK 500 6 PRO A 61 -169.80 -76.19 REMARK 500 6 ARG A 79 38.86 -96.82 REMARK 500 6 LYS A 89 138.40 -173.40 REMARK 500 6 PHE A 90 94.99 -61.97 REMARK 500 7 HIS A 23 68.53 -119.39 REMARK 500 7 ILE A 57 78.30 -112.77 REMARK 500 7 SER A 59 37.83 -95.55 REMARK 500 7 LYS A 89 134.99 -174.16 REMARK 500 8 ALA A 30 -82.17 -92.68 REMARK 500 8 SER A 31 -62.91 -176.66 REMARK 500 8 VAL A 48 41.63 -141.23 REMARK 500 8 ARG A 79 39.43 -92.22 REMARK 500 8 LYS A 89 136.64 -175.24 REMARK 500 8 PHE A 90 109.20 -58.98 REMARK 500 9 SER A 10 -57.58 74.43 REMARK 500 9 SER A 31 36.73 -94.88 REMARK 500 9 TRP A 32 -48.55 -144.66 REMARK 500 9 PRO A 61 -173.54 -67.79 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19218 RELATED DB: BMRB DBREF 2M80 A 9 117 UNP Q05926 GLRX8_YEAST 1 109 SEQADV 2M80 MET A 1 UNP Q05926 EXPRESSION TAG SEQADV 2M80 GLY A 2 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 3 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 4 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 5 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 6 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 7 UNP Q05926 EXPRESSION TAG SEQADV 2M80 HIS A 8 UNP Q05926 EXPRESSION TAG SEQRES 1 A 117 MET GLY HIS HIS HIS HIS HIS HIS MET SER ALA PHE VAL SEQRES 2 A 117 THR LYS ALA GLU GLU MET ILE LYS SER HIS PRO TYR PHE SEQRES 3 A 117 GLN LEU SER ALA SER TRP CYS PRO ASP CYS VAL TYR ALA SEQRES 4 A 117 ASN SER ILE TRP ASN LYS LEU ASN VAL GLN ASP LYS VAL SEQRES 5 A 117 PHE VAL PHE ASP ILE GLY SER LEU PRO ARG ASN GLU GLN SEQRES 6 A 117 GLU LYS TRP ARG ILE ALA PHE GLN LYS VAL VAL GLY SER SEQRES 7 A 117 ARG ASN LEU PRO THR ILE VAL VAL ASN GLY LYS PHE TRP SEQRES 8 A 117 GLY THR GLU SER GLN LEU HIS ARG PHE GLU ALA LYS GLY SEQRES 9 A 117 THR LEU GLU GLU GLU LEU THR LYS ILE GLY LEU LEU PRO HELIX 1 1 PHE A 12 HIS A 23 1 12 HELIX 2 2 ASP A 35 ASN A 47 1 13 HELIX 3 3 PRO A 61 VAL A 76 1 16 HELIX 4 4 THR A 93 GLY A 104 1 12 HELIX 5 5 THR A 105 ILE A 113 1 9 SHEET 1 A 4 PHE A 53 ASP A 56 0 SHEET 2 A 4 PHE A 26 SER A 29 1 N GLN A 27 O PHE A 55 SHEET 3 A 4 THR A 83 VAL A 86 -1 O VAL A 85 N PHE A 26 SHEET 4 A 4 LYS A 89 GLY A 92 -1 O LYS A 89 N VAL A 86 CISPEP 1 LEU A 81 PRO A 82 1 0.19 CISPEP 2 LEU A 81 PRO A 82 2 0.21 CISPEP 3 LEU A 81 PRO A 82 3 0.04 CISPEP 4 LEU A 81 PRO A 82 4 0.30 CISPEP 5 LEU A 81 PRO A 82 5 0.17 CISPEP 6 LEU A 81 PRO A 82 6 -0.11 CISPEP 7 LEU A 81 PRO A 82 7 0.08 CISPEP 8 LEU A 81 PRO A 82 8 0.12 CISPEP 9 LEU A 81 PRO A 82 9 0.08 CISPEP 10 LEU A 81 PRO A 82 10 0.07 CISPEP 11 LEU A 81 PRO A 82 11 0.03 CISPEP 12 LEU A 81 PRO A 82 12 0.31 CISPEP 13 LEU A 81 PRO A 82 13 0.12 CISPEP 14 LEU A 81 PRO A 82 14 0.14 CISPEP 15 LEU A 81 PRO A 82 15 -0.12 CISPEP 16 LEU A 81 PRO A 82 16 0.32 CISPEP 17 LEU A 81 PRO A 82 17 0.26 CISPEP 18 LEU A 81 PRO A 82 18 -0.03 CISPEP 19 LEU A 81 PRO A 82 19 0.10 CISPEP 20 LEU A 81 PRO A 82 20 0.12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1