HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 09-MAY-13 2M89 TITLE SOLUTION STRUCTURE OF THE AHA1 DIMER FROM COLWELLIA PSYCHRERYTHRAEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AHA1 DOMAIN PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLWELLIA PSYCHRERYTHRAEA; SOURCE 3 ORGANISM_TAXID: 167879; SOURCE 4 STRAIN: 34H / ATCC BAA-681; SOURCE 5 GENE: CPS_1688; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21_NESG KEYWDS DOMAIN DIMER, HYBRID METHODS, ROSETTA, STRUCTURAL GENOMICS, UNKNOWN KEYWDS 2 FUNCTION, PSI-BIOLOGY, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 NESG EXPDTA SOLUTION NMR; SOLUTION SCATTERING NUMMDL 10 AUTHOR P.ROSSI,N.G.SGOURAKIS,L.SHI,G.LIU,C.M.BARBIERI,H.LEE,T.D.GRANT, AUTHOR 2 J.R.LUFT,R.XIAO,T.B.ACTON,G.T.MONTELIONE,E.H.SNELL,D.BAKER, AUTHOR 3 O.A.LANGE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 01-MAY-24 2M89 1 REMARK SEQADV REVDAT 4 27-APR-16 2M89 1 ATOM DBREF REMARK SEQADV REVDAT 3 04-FEB-15 2M89 1 JRNL REVDAT 2 10-DEC-14 2M89 1 JRNL REVDAT 1 04-SEP-13 2M89 0 JRNL AUTH P.ROSSI,L.SHI,G.LIU,C.M.BARBIERI,H.W.LEE,T.D.GRANT,J.R.LUFT, JRNL AUTH 2 R.XIAO,T.B.ACTON,E.H.SNELL,G.T.MONTELIONE,D.BAKER,O.F.LANGE, JRNL AUTH 3 N.G.SGOURAKIS JRNL TITL A HYBRID NMR/SAXS-BASED APPROACH FOR DISCRIMINATING JRNL TITL 2 OLIGOMERIC PROTEIN INTERFACES USING ROSETTA. JRNL REF PROTEINS V. 83 309 2015 JRNL REFN ISSN 0887-3585 JRNL PMID 25388768 JRNL DOI 10.1002/PROT.24719 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CS-ROSETTA REMARK 3 AUTHORS : BRUKER (TOPSPIN) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M89 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000103333. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 90% H2O/10% D2O; 0.7 MM REMARK 210 [U-2H,13C,15N]; ILE 1-[13CH3]; REMARK 210 LEU,VAL-[13CH3] PROTEIN, 90% H2O/ REMARK 210 10% D2O; 1.1 MM [U-5%-13C,100%- REMARK 210 15N] PROTEIN, 90% H2O/10% D2O; REMARK 210 1.1 MM [U-5%-13C,100%-15N] REMARK 210 PROTEIN, 12.5 MG/ML PF1 PHAGE, REMARK 210 90% H2O/10% D2O; 1.1 MM [U-5%- REMARK 210 13C,100%-15N] PROTEIN, 4.0 % REMARK 210 PEG(C5E12), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H NOESY; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE, SPARKY, REMARK 210 CYANA, CS-ROSETTA, PSVS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 4000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 265 REMARK 265 EXPERIMENTAL DETAILS REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 THR A 135 REMARK 465 PRO A 136 REMARK 465 PHE A 137 REMARK 465 PRO A 138 REMARK 465 ASN A 139 REMARK 465 ASP A 140 REMARK 465 ILE A 141 REMARK 465 GLN A 142 REMARK 465 ILE A 143 REMARK 465 ASP A 144 REMARK 465 HIS A 145 REMARK 465 SER A 146 REMARK 465 LEU A 147 REMARK 465 GLU A 148 REMARK 465 THR B 135 REMARK 465 PRO B 136 REMARK 465 PHE B 137 REMARK 465 PRO B 138 REMARK 465 ASN B 139 REMARK 465 ASP B 140 REMARK 465 ILE B 141 REMARK 465 GLN B 142 REMARK 465 ILE B 143 REMARK 465 ASP B 144 REMARK 465 HIS B 145 REMARK 465 SER B 146 REMARK 465 LEU B 147 REMARK 465 GLU B 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLY A 134 C GLY A 134 O -0.232 REMARK 500 1 GLY B 134 C GLY B 134 O -0.232 REMARK 500 2 GLY A 134 C GLY A 134 O -0.232 REMARK 500 2 GLY B 134 C GLY B 134 O -0.233 REMARK 500 3 GLY A 134 C GLY A 134 O -0.232 REMARK 500 3 GLY B 134 C GLY B 134 O -0.233 REMARK 500 4 GLY A 134 C GLY A 134 O -0.233 REMARK 500 4 GLY B 134 C GLY B 134 O -0.232 REMARK 500 5 GLY A 134 C GLY A 134 O -0.231 REMARK 500 5 GLY B 134 C GLY B 134 O -0.232 REMARK 500 6 GLY A 134 C GLY A 134 O -0.232 REMARK 500 6 GLY B 134 C GLY B 134 O -0.232 REMARK 500 7 GLY A 134 C GLY A 134 O -0.233 REMARK 500 7 GLY B 134 C GLY B 134 O -0.234 REMARK 500 8 GLY A 134 C GLY A 134 O -0.233 REMARK 500 8 GLY B 134 C GLY B 134 O -0.234 REMARK 500 9 GLY A 134 C GLY A 134 O -0.233 REMARK 500 9 GLY B 134 C GLY B 134 O -0.233 REMARK 500 10 GLY A 134 C GLY A 134 O -0.233 REMARK 500 10 GLY B 134 C GLY B 134 O -0.232 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 65 -104.96 -156.09 REMARK 500 1 GLU A 92 -108.35 63.99 REMARK 500 1 LYS B 65 -105.01 -156.09 REMARK 500 1 GLU B 92 -108.36 64.07 REMARK 500 2 TRP A 31 -104.99 -110.88 REMARK 500 2 PRO A 63 109.81 -51.64 REMARK 500 2 LYS A 65 -55.60 -139.01 REMARK 500 2 SER A 102 -169.98 -116.85 REMARK 500 2 ASN A 103 39.85 70.03 REMARK 500 2 TRP B 31 -104.94 -110.97 REMARK 500 2 PRO B 63 109.75 -51.54 REMARK 500 2 LYS B 65 -55.58 -138.96 REMARK 500 2 ASN B 103 39.80 70.03 REMARK 500 3 TRP A 31 -105.06 -111.33 REMARK 500 3 LYS A 65 -75.01 -165.01 REMARK 500 3 ASN A 103 44.53 71.50 REMARK 500 3 TRP B 31 -104.94 -111.31 REMARK 500 3 LYS B 65 -74.99 -165.01 REMARK 500 3 ASN B 103 44.54 71.43 REMARK 500 4 TRP A 31 -65.00 -90.88 REMARK 500 4 LYS A 65 -75.58 -164.96 REMARK 500 4 ASN A 103 37.66 71.51 REMARK 500 4 TRP B 31 -65.04 -90.90 REMARK 500 4 LYS B 65 -75.48 -165.01 REMARK 500 4 ASN B 103 37.66 71.42 REMARK 500 5 TRP A 31 -104.96 -110.67 REMARK 500 5 LYS A 65 -59.74 -138.22 REMARK 500 5 ASN A 103 40.29 70.49 REMARK 500 5 TRP B 31 -104.99 -110.60 REMARK 500 5 LYS B 65 -59.86 -138.26 REMARK 500 5 ASN B 103 40.33 70.48 REMARK 500 6 TRP A 31 -104.94 -110.99 REMARK 500 6 LYS A 65 -56.48 -138.73 REMARK 500 6 ASN A 103 40.11 70.33 REMARK 500 6 TRP B 31 -104.97 -110.96 REMARK 500 6 LYS B 65 -56.52 -138.71 REMARK 500 6 SER B 102 -169.96 -116.43 REMARK 500 6 ASN B 103 40.13 70.28 REMARK 500 7 TRP A 31 -105.03 -111.37 REMARK 500 7 PRO A 63 108.87 -51.98 REMARK 500 7 LYS A 65 -52.13 -137.20 REMARK 500 7 ASN A 103 39.73 71.59 REMARK 500 7 TRP B 31 -105.03 -111.45 REMARK 500 7 PRO B 63 109.04 -52.01 REMARK 500 7 LYS B 65 -52.19 -137.22 REMARK 500 7 ASN B 103 39.85 71.62 REMARK 500 8 TRP A 31 -104.99 -110.86 REMARK 500 8 PRO A 63 109.50 -51.61 REMARK 500 8 LYS A 65 -54.71 -138.91 REMARK 500 8 SER A 102 -169.99 -116.35 REMARK 500 REMARK 500 THIS ENTRY HAS 72 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19235 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-CSR251 RELATED DB: TARGETTRACK DBREF 2M89 A 1 146 UNP Q484T9 Q484T9_COLP3 1 146 DBREF 2M89 B 1 146 UNP Q484T9 Q484T9_COLP3 1 146 SEQADV 2M89 LEU A 147 UNP Q484T9 EXPRESSION TAG SEQADV 2M89 GLU A 148 UNP Q484T9 EXPRESSION TAG SEQADV 2M89 LEU B 147 UNP Q484T9 EXPRESSION TAG SEQADV 2M89 GLU B 148 UNP Q484T9 EXPRESSION TAG SEQRES 1 A 148 MET VAL ASN ILE ASN HIS ARG ILE GLY ILE LYS ALA SER SEQRES 2 A 148 PRO GLU LYS ILE TYR GLN ALA LEU THR THR ASP ASP GLY SEQRES 3 A 148 LEU LYS LYS TRP TRP THR ASN ASP ILE SER GLY ALA GLY SEQRES 4 A 148 VAL VAL GLY SER THR ILE LYS PHE ARG PHE ASN GLY GLY SEQRES 5 A 148 GLY PRO ASP PHE LYS VAL THR LYS LEU ILE PRO ASN LYS SEQRES 6 A 148 THR VAL CYS TRP GLN HIS ALA GLY ASN MET PRO GLU SER SEQRES 7 A 148 TRP MET GLY THR GLU ILE SER PHE GLN LEU GLU THR VAL SEQRES 8 A 148 GLU ASN GLN THR PHE VAL ARG PHE THR HIS SER ASN TRP SEQRES 9 A 148 HIS GLU THR THR ASP PHE MET ALA HIS CYS ASN THR LYS SEQRES 10 A 148 TRP ALA VAL PHE LEU LEU SER LEU LYS ASP ALA LEU GLU SEQRES 11 A 148 ILE GLY LYS GLY THR PRO PHE PRO ASN ASP ILE GLN ILE SEQRES 12 A 148 ASP HIS SER LEU GLU SEQRES 1 B 148 MET VAL ASN ILE ASN HIS ARG ILE GLY ILE LYS ALA SER SEQRES 2 B 148 PRO GLU LYS ILE TYR GLN ALA LEU THR THR ASP ASP GLY SEQRES 3 B 148 LEU LYS LYS TRP TRP THR ASN ASP ILE SER GLY ALA GLY SEQRES 4 B 148 VAL VAL GLY SER THR ILE LYS PHE ARG PHE ASN GLY GLY SEQRES 5 B 148 GLY PRO ASP PHE LYS VAL THR LYS LEU ILE PRO ASN LYS SEQRES 6 B 148 THR VAL CYS TRP GLN HIS ALA GLY ASN MET PRO GLU SER SEQRES 7 B 148 TRP MET GLY THR GLU ILE SER PHE GLN LEU GLU THR VAL SEQRES 8 B 148 GLU ASN GLN THR PHE VAL ARG PHE THR HIS SER ASN TRP SEQRES 9 B 148 HIS GLU THR THR ASP PHE MET ALA HIS CYS ASN THR LYS SEQRES 10 B 148 TRP ALA VAL PHE LEU LEU SER LEU LYS ASP ALA LEU GLU SEQRES 11 B 148 ILE GLY LYS GLY THR PRO PHE PRO ASN ASP ILE GLN ILE SEQRES 12 B 148 ASP HIS SER LEU GLU HELIX 1 1 SER A 13 LEU A 21 1 9 HELIX 2 2 THR A 23 TRP A 31 1 9 HELIX 3 3 PRO A 76 GLY A 81 1 6 HELIX 4 4 THR A 108 ILE A 131 1 24 HELIX 5 5 SER B 13 LEU B 21 1 9 HELIX 6 6 THR B 23 TRP B 31 1 9 HELIX 7 7 PRO B 76 GLY B 81 1 6 HELIX 8 8 THR B 108 ILE B 131 1 24 SHEET 1 A 7 VAL A 2 ILE A 10 0 SHEET 2 A 7 GLN A 94 TRP A 104 -1 O HIS A 101 N ILE A 4 SHEET 3 A 7 GLU A 83 VAL A 91 -1 N GLU A 89 O PHE A 96 SHEET 4 A 7 VAL A 67 ALA A 72 -1 N VAL A 67 O PHE A 86 SHEET 5 A 7 ASP A 55 LEU A 61 -1 N LYS A 57 O GLN A 70 SHEET 6 A 7 THR A 44 ARG A 48 -1 N ILE A 45 O PHE A 56 SHEET 7 A 7 ASP A 34 SER A 36 -1 N SER A 36 O LYS A 46 SHEET 1 B 7 VAL B 2 ILE B 10 0 SHEET 2 B 7 GLN B 94 TRP B 104 -1 O HIS B 101 N ILE B 4 SHEET 3 B 7 GLU B 83 VAL B 91 -1 N GLU B 89 O PHE B 96 SHEET 4 B 7 VAL B 67 ALA B 72 -1 N VAL B 67 O PHE B 86 SHEET 5 B 7 ASP B 55 LEU B 61 -1 N LYS B 57 O GLN B 70 SHEET 6 B 7 THR B 44 ARG B 48 -1 N ILE B 45 O PHE B 56 SHEET 7 B 7 ASP B 34 SER B 36 -1 N SER B 36 O LYS B 46 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1