HEADER TRANSCRIPTION 19-MAY-13 2M8G TITLE STRUCTURE, FUNCTION, AND TETHERING OF DNA-BINDING DOMAINS IN 54 TITLE 2 TRANSCRIPTIONAL ACTIVATORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: NTRC2, AQ_1792; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: ROSETTA.PLYSS KEYWDS DNA-BINDING DOMAINS, 54 TRANSCRIPTIONAL ACTIVATORS, NIFA LIKE HOMOLOG KEYWDS 2 - 2(NIH-2), TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR E.HONG,D.WEMMER REVDAT 3 14-JUN-23 2M8G 1 REMARK REVDAT 2 16-OCT-13 2M8G 1 JRNL REVDAT 1 28-AUG-13 2M8G 0 JRNL AUTH N.VIDANGOS,A.E.MARIS,A.YOUNG,E.HONG,J.G.PELTON, JRNL AUTH 2 J.D.BATCHELOR,D.E.WEMMER JRNL TITL STRUCTURE, FUNCTION, AND TETHERING OF DNA-BINDING DOMAINS IN JRNL TITL 2 SIGMA (54) TRANSCRIPTIONAL ACTIVATORS. JRNL REF BIOPOLYMERS V. 99 1082 2013 JRNL REFN ISSN 0006-3525 JRNL PMID 23818155 JRNL DOI 10.1002/BIP.22333 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, MOLMOL, CYANA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), KORADI, BILLETER AND WUTHRICH (MOLMOL), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103340. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 SODIUM PHOSPHATE, 1 MM [U-100% REMARK 210 15N] SODIUM PHOSPHATE, 95% H2O/5% REMARK 210 D2O; 1 MM [U-100% 13C; U-100% REMARK 210 15N] SODIUM PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG X 441 76.53 -119.21 REMARK 500 1 LEU X 494 134.06 -173.53 REMARK 500 2 PRO X 447 78.93 -69.85 REMARK 500 2 LEU X 494 133.86 -173.60 REMARK 500 3 PRO X 447 -169.75 -69.78 REMARK 500 3 LEU X 494 135.13 -173.48 REMARK 500 4 GLU X 434 134.48 -172.51 REMARK 500 4 LYS X 438 62.76 -115.79 REMARK 500 5 THR X 443 146.68 -174.32 REMARK 500 5 ASP X 445 48.83 -105.57 REMARK 500 6 SER X 430 68.28 -101.12 REMARK 500 6 GLU X 440 -70.83 -76.68 REMARK 500 6 LYS X 496 175.72 -54.12 REMARK 500 7 LYS X 438 73.00 -104.35 REMARK 500 7 PRO X 447 -168.82 -69.73 REMARK 500 7 LEU X 494 141.03 -173.53 REMARK 500 8 PRO X 447 -169.80 -69.81 REMARK 500 8 LEU X 494 134.83 -173.70 REMARK 500 9 GLU X 431 117.62 -170.10 REMARK 500 9 PRO X 433 -165.57 -69.88 REMARK 500 9 GLU X 434 114.61 -170.17 REMARK 500 9 ASP X 445 176.00 -56.78 REMARK 500 9 PRO X 447 -173.87 -69.75 REMARK 500 9 LEU X 494 134.29 -173.47 REMARK 500 10 SER X 430 -169.04 -74.27 REMARK 500 10 LEU X 494 134.20 -173.70 REMARK 500 11 PRO X 433 -165.60 -69.82 REMARK 500 11 GLU X 434 -53.21 -131.77 REMARK 500 11 THR X 443 40.62 -101.49 REMARK 500 11 LEU X 494 138.65 -173.55 REMARK 500 11 LYS X 496 178.81 -56.77 REMARK 500 12 LYS X 438 56.16 -117.22 REMARK 500 12 LYS X 442 69.42 -114.73 REMARK 500 12 ASP X 445 25.76 -156.22 REMARK 500 12 PRO X 447 78.77 -69.85 REMARK 500 12 LYS X 496 35.18 -96.07 REMARK 500 13 LYS X 438 49.65 -101.21 REMARK 500 13 PRO X 447 83.40 -69.71 REMARK 500 13 LEU X 494 133.49 -173.20 REMARK 500 14 GLU X 434 142.87 -172.66 REMARK 500 14 LYS X 438 106.17 -58.06 REMARK 500 14 PRO X 447 -169.49 -69.73 REMARK 500 14 LEU X 494 136.35 -173.68 REMARK 500 15 PRO X 433 -165.56 -69.80 REMARK 500 15 ARG X 439 134.24 -173.52 REMARK 500 15 LEU X 446 73.76 -174.85 REMARK 500 15 PRO X 447 -173.53 -69.72 REMARK 500 15 LEU X 494 134.33 -173.57 REMARK 500 16 PRO X 433 -165.62 -69.85 REMARK 500 16 GLU X 434 40.08 -108.44 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19251 RELATED DB: BMRB DBREF 2M8G X 428 497 UNP O67661 O67661_AQUAE 428 497 SEQRES 1 X 70 THR SER SER GLU LEU PRO GLU LEU LEU ARG LYS ARG GLU SEQRES 2 X 70 ARG LYS THR GLY ASP LEU PRO LYS PHE ILE GLU GLU THR SEQRES 3 X 70 GLU LYS LYS ARG ILE ILE GLU ALA LEU GLU LYS THR GLY SEQRES 4 X 70 TYR VAL LYS SER ARG ALA ALA LYS LEU LEU GLY TYR THR SEQRES 5 X 70 LEU ARG GLN LEU ASP TYR ARG ILE LYS LYS TYR GLY ILE SEQRES 6 X 70 GLU LEU LYS LYS PHE HELIX 1 1 LEU X 446 GLY X 466 1 21 HELIX 2 2 VAL X 468 GLY X 477 1 10 HELIX 3 3 THR X 479 TYR X 490 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1