HEADER ANTIBIOTIC 29-MAY-13 2M8V TITLE SOLUTION STRUCTURE AND ACTIVITY STUDY OF BOVICIN HJ50, A PARTICULAR TITLE 2 TYPE AII LANTIBIOTIC COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOVA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 26-58; COMPND 5 SYNONYM: BOVICIN HJ50; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS EQUINUS; SOURCE 3 ORGANISM_TAXID: 1335; SOURCE 4 STRAIN: HJ50; SOURCE 5 GENE: BOVA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-BOVAM KEYWDS LANTIBIOTIC, ANTIBIOTIC EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.ZHANG,Y.FENG,J.WANG,J.ZHONG REVDAT 3 14-JUN-23 2M8V 1 REMARK REVDAT 2 24-AUG-22 2M8V 1 JRNL REMARK LINK REVDAT 1 21-MAY-14 2M8V 0 JRNL AUTH J.ZHANG,Y.FENG,K.TENG,Y.LIN,Y.GAO,J.WANG,J.ZHONG JRNL TITL TYPE AII LANTIBIOTIC BOVICIN HJ50 WITH A RARE DISULFIDE JRNL TITL 2 BOND: STRUCTURE, STRUCTURE-ACTIVITY RELATIONSHIPS AND MODE JRNL TITL 3 OF ACTION. JRNL REF BIOCHEM.J. V. 461 497 2014 JRNL REFN ESSN 1470-8728 JRNL PMID 24814218 JRNL DOI 10.1042/BJ20131524 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (XWINNMR), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103355. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM BOVA-1, 50 MM [U-2H] SODIUM REMARK 210 ACETATE-2, 0.01 % DSS-3, 90% H2O/ REMARK 210 10% D2O; 1 MM BOVA-4, 50 MM [U- REMARK 210 2H] SODIUM ACETATE-5, 0.01 % DSS- REMARK 210 6, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRVIEWJ, CNS REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 DBB A 8 45.06 148.17 REMARK 500 1 ASN A 15 -83.14 -88.15 REMARK 500 1 VAL A 16 158.83 59.79 REMARK 500 1 ILE A 17 -166.92 -123.40 REMARK 500 1 SER A 18 98.69 -67.42 REMARK 500 1 SER A 19 -41.04 -167.93 REMARK 500 1 ILE A 20 -69.29 -135.04 REMARK 500 1 ILE A 26 96.61 42.85 REMARK 500 1 THR A 27 -72.60 -116.34 REMARK 500 1 CYS A 29 67.91 -69.47 REMARK 500 1 ASN A 31 119.87 -160.67 REMARK 500 2 DBB A 8 44.03 160.55 REMARK 500 2 ASN A 15 -39.73 -166.89 REMARK 500 2 ILE A 17 156.96 68.74 REMARK 500 2 SER A 18 41.07 -102.06 REMARK 500 2 SER A 19 86.29 -175.99 REMARK 500 2 ILE A 20 154.13 63.16 REMARK 500 2 ALA A 22 109.35 -178.55 REMARK 500 2 THR A 24 30.81 -152.15 REMARK 500 2 ILE A 25 -71.40 -136.38 REMARK 500 2 ILE A 26 -55.60 -165.85 REMARK 500 2 CYS A 29 118.13 60.16 REMARK 500 2 LYS A 30 -66.46 -95.65 REMARK 500 2 CYS A 32 -63.31 -128.48 REMARK 500 3 CYS A 13 79.71 -118.25 REMARK 500 3 SER A 18 -47.01 167.59 REMARK 500 3 SER A 19 -45.27 -175.84 REMARK 500 3 ALA A 22 160.02 63.44 REMARK 500 3 THR A 24 17.19 -143.30 REMARK 500 3 ILE A 25 -52.25 -164.78 REMARK 500 3 LYS A 30 -60.83 -100.50 REMARK 500 3 ASN A 31 132.64 -178.72 REMARK 500 4 TRP A 5 -156.16 -100.34 REMARK 500 4 ILE A 6 78.55 67.02 REMARK 500 4 DBB A 10 -136.76 175.72 REMARK 500 4 PRO A 14 34.88 -92.01 REMARK 500 4 ASN A 15 -87.75 -178.29 REMARK 500 4 VAL A 16 84.63 47.01 REMARK 500 4 SER A 18 -39.73 178.33 REMARK 500 4 SER A 19 84.32 -177.31 REMARK 500 4 CYS A 21 19.99 53.71 REMARK 500 4 ALA A 22 162.03 57.18 REMARK 500 4 ILE A 26 -66.45 -138.95 REMARK 500 4 THR A 27 -68.07 -161.70 REMARK 500 4 CYS A 29 138.86 58.96 REMARK 500 4 ASN A 31 -170.00 58.19 REMARK 500 5 ASP A 2 -68.66 -94.75 REMARK 500 5 CYS A 13 77.85 -117.96 REMARK 500 5 VAL A 16 107.13 -179.68 REMARK 500 5 SER A 18 -48.18 83.07 REMARK 500 REMARK 500 THIS ENTRY HAS 196 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19275 RELATED DB: BMRB DBREF 2M8V A 1 33 UNP Q83ZN8 Q83ZN8_STREI 26 58 SEQRES 1 A 33 ALA ASP ARG GLY TRP ILE LYS DBB LEU DBB LYS ASP CYS SEQRES 2 A 33 PRO ASN VAL ILE SER SER ILE CYS ALA GLY THR ILE ILE SEQRES 3 A 33 THR ALA CYS LYS ASN CYS ALA HET DBB A 8 12 HET DBB A 10 12 HETNAM DBB D-ALPHA-AMINOBUTYRIC ACID FORMUL 1 DBB 2(C4 H9 N O2) SSBOND 1 CYS A 21 CYS A 29 1555 1555 2.03 LINK C LYS A 7 N DBB A 8 1555 1555 1.33 LINK C DBB A 8 N LEU A 9 1555 1555 1.33 LINK CB DBB A 8 SG CYS A 13 1555 1555 1.82 LINK C LEU A 9 N DBB A 10 1555 1555 1.33 LINK C DBB A 10 N LYS A 11 1555 1555 1.33 LINK CB DBB A 10 SG CYS A 32 1555 1555 1.82 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1