HEADER PROTEIN BINDING 04-JUN-13 2M98 TITLE NMR STRUCTURE OF BEF3 ACTIVATED SMA0114 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-COMPONENT RESPONSE REGULATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SINORHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_TAXID: 266834; SOURCE 4 STRAIN: 1021; SOURCE 5 GENE: RA0058, SMA0114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-28+ KEYWDS PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 26 AUTHOR S.R.SHEFTIC,D.J.GAGE,A.T.ALEXANDRESCU REVDAT 3 01-MAY-24 2M98 1 REMARK SEQADV LINK REVDAT 2 05-FEB-14 2M98 1 JRNL REVDAT 1 29-JAN-14 2M98 0 JRNL AUTH S.R.SHEFTIC,E.WHITE,D.J.GAGE,A.T.ALEXANDRESCU JRNL TITL NMR STRUCTURE OF THE HWE KINASE ASSOCIATED RESPONSE JRNL TITL 2 REGULATOR SMA0114 IN ITS ACTIVATED STATE. JRNL REF BIOCHEMISTRY V. 53 311 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24364624 JRNL DOI 10.1021/BI401497H REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX, X-PLOR REMARK 3 AUTHORS : ACCELRYS SOFTWARE INC. (FELIX), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000103368. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 38 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM CALCIUM ION, 36 MM REMARK 210 BERYLLIUM TRIFLUORIDE ION, 0.5 REMARK 210 MM [U-100% 15N] PROTEIN, 1 MM REMARK 210 DTT, 0.02 % SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O; 1.5 MM CALCIUM ION, REMARK 210 36 MM BERYLLIUM TRIFLUORIDE ION, REMARK 210 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 1 MM DTT, 0.02 % SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D HNCACB; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D DQF-COSY; 2D 1H- REMARK 210 1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 26 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 21 H ILE A 24 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 94.66 -53.65 REMARK 500 1 MET A 4 -153.55 -121.74 REMARK 500 1 ASP A 16 -95.11 -34.10 REMARK 500 1 ALA A 21 -87.66 -50.56 REMARK 500 1 HIS A 33 163.34 -39.52 REMARK 500 1 ALA A 39 163.39 49.87 REMARK 500 1 ASP A 55 -64.06 76.87 REMARK 500 1 ASP A 60 -162.38 -57.59 REMARK 500 1 VAL A 61 107.71 45.59 REMARK 500 1 ASP A 64 17.39 54.16 REMARK 500 1 TYR A 69 172.66 44.63 REMARK 500 1 ASN A 79 109.78 58.37 REMARK 500 1 VAL A 80 -151.24 -107.61 REMARK 500 1 PHE A 82 -149.51 173.72 REMARK 500 1 ALA A 85 124.21 -172.75 REMARK 500 1 SER A 90 110.72 70.01 REMARK 500 1 SER A 98 10.08 164.22 REMARK 500 1 LEU A 103 -155.36 -177.53 REMARK 500 1 PHE A 107 91.61 61.41 REMARK 500 1 LEU A 108 -33.92 168.31 REMARK 500 1 ASP A 109 11.64 -157.97 REMARK 500 1 SER A 110 -109.41 -73.05 REMARK 500 1 ILE A 119 29.68 43.43 REMARK 500 1 SER A 120 -48.56 78.04 REMARK 500 1 LYS A 121 22.90 94.31 REMARK 500 2 HIS A 3 -162.34 -103.25 REMARK 500 2 GLU A 6 -1.99 -149.85 REMARK 500 2 ARG A 7 -29.85 176.79 REMARK 500 2 ASP A 16 68.56 -48.21 REMARK 500 2 GLU A 17 159.14 172.07 REMARK 500 2 ALA A 21 -80.89 -81.77 REMARK 500 2 HIS A 33 -159.40 -56.32 REMARK 500 2 GLU A 34 -79.70 -91.17 REMARK 500 2 ALA A 39 162.99 55.37 REMARK 500 2 GLN A 43 -72.03 -81.07 REMARK 500 2 ALA A 49 -69.24 -92.59 REMARK 500 2 PHE A 54 -84.66 -38.94 REMARK 500 2 ASP A 55 -62.97 163.47 REMARK 500 2 VAL A 61 76.57 128.89 REMARK 500 2 GLU A 66 65.93 64.01 REMARK 500 2 TYR A 69 178.33 46.72 REMARK 500 2 ASN A 79 136.07 48.23 REMARK 500 2 VAL A 80 -155.13 -120.31 REMARK 500 2 PHE A 82 -148.33 177.64 REMARK 500 2 ALA A 85 139.87 -176.62 REMARK 500 2 THR A 86 -112.22 -142.25 REMARK 500 2 SER A 90 179.74 53.57 REMARK 500 2 LYS A 91 17.83 -152.92 REMARK 500 2 THR A 95 176.96 178.99 REMARK 500 2 SER A 98 30.47 149.60 REMARK 500 REMARK 500 THIS ENTRY HAS 820 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.31 SIDE CHAIN REMARK 500 1 ARG A 8 0.28 SIDE CHAIN REMARK 500 1 ARG A 41 0.29 SIDE CHAIN REMARK 500 1 ARG A 50 0.30 SIDE CHAIN REMARK 500 1 ARG A 78 0.19 SIDE CHAIN REMARK 500 1 ARG A 96 0.30 SIDE CHAIN REMARK 500 2 ARG A 8 0.25 SIDE CHAIN REMARK 500 2 ARG A 10 0.17 SIDE CHAIN REMARK 500 2 ARG A 41 0.28 SIDE CHAIN REMARK 500 2 ARG A 50 0.26 SIDE CHAIN REMARK 500 2 ARG A 78 0.19 SIDE CHAIN REMARK 500 2 ARG A 96 0.30 SIDE CHAIN REMARK 500 3 ARG A 7 0.19 SIDE CHAIN REMARK 500 3 ARG A 8 0.27 SIDE CHAIN REMARK 500 3 ARG A 10 0.25 SIDE CHAIN REMARK 500 3 ARG A 41 0.27 SIDE CHAIN REMARK 500 3 ARG A 50 0.27 SIDE CHAIN REMARK 500 3 ARG A 78 0.10 SIDE CHAIN REMARK 500 3 ARG A 96 0.31 SIDE CHAIN REMARK 500 4 ARG A 7 0.20 SIDE CHAIN REMARK 500 4 ARG A 8 0.21 SIDE CHAIN REMARK 500 4 ARG A 10 0.25 SIDE CHAIN REMARK 500 4 ARG A 41 0.31 SIDE CHAIN REMARK 500 4 ARG A 50 0.31 SIDE CHAIN REMARK 500 4 ARG A 78 0.27 SIDE CHAIN REMARK 500 4 ARG A 96 0.27 SIDE CHAIN REMARK 500 5 ARG A 7 0.26 SIDE CHAIN REMARK 500 5 ARG A 41 0.30 SIDE CHAIN REMARK 500 5 ARG A 50 0.32 SIDE CHAIN REMARK 500 5 ARG A 78 0.26 SIDE CHAIN REMARK 500 5 ARG A 96 0.28 SIDE CHAIN REMARK 500 6 ARG A 7 0.18 SIDE CHAIN REMARK 500 6 ARG A 8 0.13 SIDE CHAIN REMARK 500 6 ARG A 41 0.18 SIDE CHAIN REMARK 500 6 ARG A 50 0.22 SIDE CHAIN REMARK 500 6 ARG A 78 0.13 SIDE CHAIN REMARK 500 6 ARG A 96 0.32 SIDE CHAIN REMARK 500 7 ARG A 7 0.29 SIDE CHAIN REMARK 500 7 ARG A 8 0.32 SIDE CHAIN REMARK 500 7 ARG A 10 0.11 SIDE CHAIN REMARK 500 7 ARG A 41 0.09 SIDE CHAIN REMARK 500 7 ARG A 50 0.26 SIDE CHAIN REMARK 500 7 ARG A 78 0.31 SIDE CHAIN REMARK 500 7 ARG A 96 0.25 SIDE CHAIN REMARK 500 8 ARG A 7 0.16 SIDE CHAIN REMARK 500 8 ARG A 8 0.18 SIDE CHAIN REMARK 500 8 ARG A 10 0.28 SIDE CHAIN REMARK 500 8 ARG A 41 0.26 SIDE CHAIN REMARK 500 8 ARG A 50 0.31 SIDE CHAIN REMARK 500 8 ARG A 78 0.32 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 168 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 15 OE1 REMARK 620 2 GLU A 15 OE2 41.9 REMARK 620 3 ASP A 16 OD1 120.1 108.0 REMARK 620 4 ASP A 16 OD2 148.3 149.5 42.6 REMARK 620 5 GLU A 17 OE1 88.6 55.3 56.5 94.5 REMARK 620 6 GLU A 17 OE2 124.6 82.8 66.3 77.3 46.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 202 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 60 OD1 REMARK 620 2 BEF A 202 F1 138.3 REMARK 620 3 BEF A 202 F2 141.0 70.2 REMARK 620 4 BEF A 202 F3 101.5 77.7 112.3 REMARK 620 5 ASP A 60 OD2 59.2 162.4 94.1 102.3 REMARK 620 N 1 2 3 4 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16905 RELATED DB: BMRB REMARK 900 RELATED ID: 19286 RELATED DB: BMRB DBREF 2M98 A 4 123 UNP Q930Y6 Q930Y6_RHIME 1 120 SEQADV 2M98 GLY A 1 UNP Q930Y6 EXPRESSION TAG SEQADV 2M98 SER A 2 UNP Q930Y6 EXPRESSION TAG SEQADV 2M98 HIS A 3 UNP Q930Y6 EXPRESSION TAG SEQRES 1 A 123 GLY SER HIS MET THR GLU ARG ARG LEU ARG VAL LEU VAL SEQRES 2 A 123 VAL GLU ASP GLU SER MET ILE ALA MET LEU ILE GLU ASP SEQRES 3 A 123 THR LEU CYS GLU LEU GLY HIS GLU VAL ALA ALA THR ALA SEQRES 4 A 123 SER ARG MET GLN GLU ALA LEU ASP ILE ALA ARG LYS GLY SEQRES 5 A 123 GLN PHE ASP ILE ALA ILE ILE ASP VAL ASN LEU ASP GLY SEQRES 6 A 123 GLU PRO SER TYR PRO VAL ALA ASP ILE LEU ALA GLU ARG SEQRES 7 A 123 ASN VAL PRO PHE ILE PHE ALA THR GLY TYR GLY SER LYS SEQRES 8 A 123 GLY LEU ASP THR ARG TYR SER ASN ILE PRO LEU LEU THR SEQRES 9 A 123 LYS PRO PHE LEU ASP SER GLU LEU GLU ALA VAL LEU VAL SEQRES 10 A 123 GLN ILE SER LYS GLU VAL HET CA A 201 1 HET BEF A 202 4 HETNAM CA CALCIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION FORMUL 2 CA CA 2+ FORMUL 3 BEF BE F3 1- HELIX 1 1 SER A 18 LEU A 31 1 14 HELIX 2 2 MET A 42 LYS A 51 1 10 HELIX 3 3 PRO A 70 ARG A 78 1 9 HELIX 4 4 SER A 110 VAL A 117 1 8 SHEET 1 A 5 GLU A 34 ALA A 39 0 SHEET 2 A 5 ARG A 10 GLU A 15 1 N VAL A 13 O ALA A 37 SHEET 3 A 5 ASP A 55 ASP A 60 1 O ILE A 56 N ARG A 10 SHEET 4 A 5 PHE A 82 THR A 86 1 O THR A 86 N LEU A 103 SHEET 5 A 5 LEU A 102 THR A 104 1 N LEU A 103 O PHE A 84 LINK OE1 GLU A 15 CA CA A 201 1555 1555 3.19 LINK OE2 GLU A 15 CA CA A 201 1555 1555 2.06 LINK OD1 ASP A 16 CA CA A 201 1555 1555 2.09 LINK OD2 ASP A 16 CA CA A 201 1555 1555 3.16 LINK OE1 GLU A 17 CA CA A 201 1555 1555 2.92 LINK OE2 GLU A 17 CA CA A 201 1555 1555 2.39 LINK OD1 ASP A 60 BE BEF A 202 1555 1555 2.33 LINK OD2 ASP A 60 BE BEF A 202 1555 1555 2.00 SITE 1 AC1 5 GLU A 15 ASP A 16 GLU A 17 LYS A 105 SITE 2 AC1 5 BEF A 202 SITE 1 AC2 6 GLU A 15 ASP A 16 ASP A 60 VAL A 61 SITE 2 AC2 6 LYS A 105 CA A 201 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1