HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-13 2MA8 TITLE SOLUTION NMR STRUCTURE OF SALMONELLA TYPHIMURIUM LT2 SECRETED PROTEIN TITLE 2 SRFN: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET STR109 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SECRETED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_COMMON: SALMONELLA TYPHIMURIUM; SOURCE 5 ORGANISM_TAXID: 99287; SOURCE 6 STRAIN: LT2; SOURCE 7 GENE: STM0082; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS HOMODIMER, PSI-BIOLOGY, ALPHA+BETA, SECRETED PROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, UNKNOWN FUNCTION, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,A.ELETSKY,J.N.ADKINS,M.C.BURNET,D.PARISH,K.LIU, AUTHOR 2 D.K.SUKUMARAN,M.JIANG,K.CUNNINGHAM,T.MA,R.XIAO,B.ROST, AUTHOR 3 G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG) REVDAT 3 14-JUN-23 2MA8 1 REMARK SEQADV REVDAT 2 30-JUL-14 2MA8 1 JRNL REVDAT 1 04-SEP-13 2MA8 0 JRNL AUTH A.ELETSKY,K.MICHALSKA,S.HOULISTON,Q.ZHANG,M.D.DAILY,X.XU, JRNL AUTH 2 H.CUI,A.YEE,A.LEMAK,B.WU,M.GARCIA,M.C.BURNET,K.M.MEYER, JRNL AUTH 3 U.K.ARYAL,O.SANCHEZ,C.ANSONG,R.XIAO,T.B.ACTON,J.N.ADKINS, JRNL AUTH 4 G.T.MONTELIONE,A.JOACHIMIAK,C.H.ARROWSMITH,A.SAVCHENKO, JRNL AUTH 5 T.SZYPERSKI,J.R.CORT JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF DUF1471 JRNL TITL 2 DOMAINS OF SALMONELLA PROTEINS SRFN, YDGH/SSSB, AND YAHO. JRNL REF PLOS ONE V. 9 01787 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25010333 JRNL DOI 10.1371/JOURNAL.PONE.0101787 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1, CNS 1.1, X-PLOR NIH REMARK 3 AUTHORS : P.GUNTERT ET AL. (CYANA), P.GUNTERT ET AL. REMARK 3 (CYANA), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000103404. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 115 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.38 MM [U-100% 13C; U-100% 15N] REMARK 210 STR109 SUBUNIT, 100 MM SODIUM REMARK 210 CHLORIDE, 100 MM DTT, 5 MM CACL2, REMARK 210 20 MM MES, 0.02 % SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 1.8 MM [U-5% 13C; REMARK 210 U-100% 15N] STR109 SUBUNIT, 100 REMARK 210 MM SODIUM CHLORIDE, 100 MM DTT, REMARK 210 5 MM CACL2, 20 MM MES, 0.02 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 STR109 SUBUNIT, 1.2 MM STR109 REMARK 210 SUBUNIT, 100 MM SODIUM CHLORIDE, REMARK 210 100 MM DTT, 5 MM CACL2, 20 MM REMARK 210 MES, 0.02 % SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALI; 2D 1H-13C CT-HSQC ALI; 2D REMARK 210 1H-13C HSQC ARO; 2D 1H-13C CT- REMARK 210 HSQC ARO; 3D HNCO; GFT (4,3)D REMARK 210 CABCA(CO)NHN; GFT (4,3)D REMARK 210 HNNCABCA; GFT (4,3)D HABCAB(CO) REMARK 210 NHN; GFT (4,3)D HCCH-COSY ALI; REMARK 210 GFT (4,3)D HCCH-COSY ARO; 3D 1H- REMARK 210 13C/15N SIMNOESY; 3D 1H-13C X- REMARK 210 FILTERED NOESY; 2D 1H-13C 28MS REMARK 210 CT-HSQC; 2D 1H-13C 56MS CT-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, XEASY 1.3.13, REMARK 210 AUTOASSIGN 1.15.1, CARA 1.5.5, REMARK 210 PROSA 6.0.2, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW ENERGY STRUCTURES WITH FEW REMARK 210 RESTRAINT VIOLATIONS AND REMARK 210 REASONABLE GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG LEU B 97 H GLU B 98 1.26 REMARK 500 HD1 HIS A 80 OE2 GLU A 85 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 34 86.44 63.87 REMARK 500 1 SER A 46 33.02 -90.09 REMARK 500 1 HIS A 103 -56.74 -166.47 REMARK 500 1 LYS B 34 89.92 65.51 REMARK 500 1 THR B 95 23.57 -142.69 REMARK 500 1 LEU B 97 -158.77 -147.07 REMARK 500 1 HIS B 101 -66.98 -133.42 REMARK 500 1 HIS B 102 -81.51 62.35 REMARK 500 2 LYS A 34 81.38 64.85 REMARK 500 2 HIS A 80 68.23 -102.30 REMARK 500 2 LYS B 34 83.97 58.73 REMARK 500 2 ALA B 76 83.72 -151.76 REMARK 500 2 HIS B 80 51.49 -119.89 REMARK 500 3 LYS A 34 85.91 65.48 REMARK 500 3 SER A 46 46.13 -82.53 REMARK 500 3 ALA A 76 115.19 -160.51 REMARK 500 3 ALA A 94 -44.40 -173.77 REMARK 500 3 LYS A 96 35.89 -92.56 REMARK 500 3 LEU A 97 -79.19 67.79 REMARK 500 3 LYS B 34 81.15 64.08 REMARK 500 3 ASP B 93 45.27 -81.37 REMARK 500 3 ALA B 94 -18.87 70.51 REMARK 500 3 LEU B 97 -48.82 179.63 REMARK 500 4 HIS A 80 75.97 -104.25 REMARK 500 4 GLU A 98 -80.36 -79.78 REMARK 500 4 HIS A 102 73.91 60.68 REMARK 500 4 LYS B 34 70.75 55.81 REMARK 500 4 HIS B 80 70.38 -108.47 REMARK 500 4 HIS B 99 -72.49 68.12 REMARK 500 4 HIS B 101 113.46 66.82 REMARK 500 5 LYS A 34 76.78 63.53 REMARK 500 5 SER A 51 -35.21 -133.02 REMARK 500 5 ALA A 77 70.86 -119.47 REMARK 500 5 HIS A 80 77.60 -114.26 REMARK 500 5 ALA A 94 24.70 -79.11 REMARK 500 5 LEU A 97 100.20 65.30 REMARK 500 5 LYS B 34 83.15 63.89 REMARK 500 5 ALA B 94 21.79 -77.69 REMARK 500 5 LYS B 96 -51.65 -136.92 REMARK 500 5 HIS B 103 122.32 -176.82 REMARK 500 6 LYS A 34 85.42 62.96 REMARK 500 6 THR A 95 -60.12 -122.34 REMARK 500 6 LYS B 34 88.88 64.52 REMARK 500 7 LYS A 34 80.85 64.24 REMARK 500 7 THR A 95 -79.06 -100.30 REMARK 500 7 LYS B 34 74.61 66.78 REMARK 500 7 HIS B 99 -27.69 71.27 REMARK 500 7 HIS B 100 92.39 -66.73 REMARK 500 7 HIS B 101 -84.51 -154.77 REMARK 500 8 LYS A 34 90.23 68.23 REMARK 500 REMARK 500 THIS ENTRY HAS 131 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15090 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-STR109 RELATED DB: TARGETTRACK DBREF 2MA8 A 22 96 UNP Q7CR88 Q7CR88_SALTY 22 96 DBREF 2MA8 B 22 96 UNP Q7CR88 Q7CR88_SALTY 22 96 SEQADV 2MA8 LEU A 97 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 GLU A 98 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 99 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 100 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 101 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 102 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 103 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS A 104 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 LEU B 97 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 GLU B 98 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 99 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 100 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 101 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 102 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 103 UNP Q7CR88 EXPRESSION TAG SEQADV 2MA8 HIS B 104 UNP Q7CR88 EXPRESSION TAG SEQRES 1 A 83 ALA GLU GLN VAL SER LYS GLN GLU ILE SER HIS PHE LYS SEQRES 2 A 83 LEU VAL LYS VAL GLY THR ILE ASN VAL SER GLN SER GLY SEQRES 3 A 83 GLY GLN ILE SER SER PRO SER ASP LEU ARG GLU LYS LEU SEQRES 4 A 83 SER GLU LEU ALA ASP ALA LYS GLY GLY LYS TYR TYR HIS SEQRES 5 A 83 ILE ILE ALA ALA ARG GLU HIS GLY PRO ASN PHE GLU ALA SEQRES 6 A 83 VAL ALA GLU VAL TYR ASN ASP ALA THR LYS LEU GLU HIS SEQRES 7 A 83 HIS HIS HIS HIS HIS SEQRES 1 B 83 ALA GLU GLN VAL SER LYS GLN GLU ILE SER HIS PHE LYS SEQRES 2 B 83 LEU VAL LYS VAL GLY THR ILE ASN VAL SER GLN SER GLY SEQRES 3 B 83 GLY GLN ILE SER SER PRO SER ASP LEU ARG GLU LYS LEU SEQRES 4 B 83 SER GLU LEU ALA ASP ALA LYS GLY GLY LYS TYR TYR HIS SEQRES 5 B 83 ILE ILE ALA ALA ARG GLU HIS GLY PRO ASN PHE GLU ALA SEQRES 6 B 83 VAL ALA GLU VAL TYR ASN ASP ALA THR LYS LEU GLU HIS SEQRES 7 B 83 HIS HIS HIS HIS HIS HELIX 1 1 SER A 26 LYS A 34 1 9 HELIX 2 2 SER A 52 GLY A 68 1 17 HELIX 3 3 SER B 26 LYS B 34 1 9 HELIX 4 4 SER B 52 GLY B 68 1 17 SHEET 1 A 4 GLU A 23 GLN A 24 0 SHEET 2 A 4 TYR A 71 HIS A 80 1 O TYR A 72 N GLU A 23 SHEET 3 A 4 ASN A 83 ASN A 92 -1 O TYR A 91 N TYR A 71 SHEET 4 A 4 VAL A 36 GLN A 45 -1 N ILE A 41 O ALA A 88 SHEET 1 B 4 GLU B 23 GLN B 24 0 SHEET 2 B 4 TYR B 71 HIS B 80 1 O TYR B 72 N GLU B 23 SHEET 3 B 4 ASN B 83 ASN B 92 -1 O TYR B 91 N TYR B 71 SHEET 4 B 4 VAL B 36 SER B 46 -1 N VAL B 36 O ASN B 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1