HEADER TRANSFERASE, SIGNALING PROTEIN 29-JUL-13 2MBB TITLE SOLUTION STRUCTURE OF THE HUMAN POLYMERASE IOTA UBM1-UBIQUITIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G-BINDING PROTEIN G/DNA POLYMERASE IOTA COMPND 3 FUSION PROTEIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP P06654 RESIDUES 229-282, UNP Q9UNA4 RESIDUES 516-555; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: POLYUBIQUITIN-B; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP P0CG47 RESIDUES 1-76; COMPND 11 SYNONYM: UBIQUITIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP. 'GROUP G', HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 1320,9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET30; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 GENE: UBB; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS POLYMERASE IOTA, UBM, UBM1, UBIQUITIN, TRANSFERASE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.WANG,P.ZHOU REVDAT 3 15-MAY-24 2MBB 1 REMARK REVDAT 2 14-JUN-23 2MBB 1 REMARK SEQADV REVDAT 1 04-JUN-14 2MBB 0 JRNL AUTH S.WANG,P.ZHOU JRNL TITL SPARSELY-SAMPLED, HIGH-RESOLUTION 4-D OMIT SPECTRA FOR JRNL TITL 2 DETECTION AND ASSIGNMENT OF INTERMOLECULAR NOES OF PROTEIN JRNL TITL 3 COMPLEXES. JRNL REF J.BIOMOL.NMR V. 59 51 2014 JRNL REFN ISSN 0925-2738 JRNL PMID 24789524 JRNL DOI 10.1007/S10858-014-9834-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CYANA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103436. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 3 MM [U-100% 15N] GB1-UBM1, 3 MM REMARK 210 [U-100% 15N] UBIQUITIN, 100 MM REMARK 210 POTASSIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O; 3 MM REMARK 210 [U-100% 13C; U-100% 15N] GB1- REMARK 210 UBM1, 3 MM [U-100% 13C; U-100% REMARK 210 15N] UBIQUITIN, 100 MM POTASSIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 3 MM [U-100% REMARK 210 13C; U-100% 15N] GB1-UBM1, 3 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 UBIQUITIN, 100 MM POTASSIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 100% D2O; 3 MM [U-100% 13C; U- REMARK 210 100% 15N] GB1-UBM1, 3 MM REMARK 210 UBIQUITIN, 100 MM POTASSIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 100% D2O; 3 MM GB1-UBM1, 3 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 UBIQUITIN, 100 MM POTASSIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D SPARSE-SAMPLED HNCO; 3D REMARK 210 SPARSE-SAMPLED HNCA; 3D SPARSE- REMARK 210 SAMPLED HNCACB; 3D SPARSE- REMARK 210 SAMPLED HN(CO)CA; 3D 1H-15N REMARK 210 NOESY; 3D SPARSE-SAMPLED HN(COCA) REMARK 210 CB; 3D (HACA)CO(CA)NH; 3D SPARSE- REMARK 210 SAMPLED HA(CACO)NH; 3D SPARSE- REMARK 210 SAMPLED HA(CA)NH; 4D SPARSE- REMARK 210 SAMPLED HC(CO)NH-TOCSY; 4D REMARK 210 SPARSE-SAMPLED CHNH NOESY; 4D REMARK 210 SPARSE-SAMPLED CHCH NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TALOS, SCRUB, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1593 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6321 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 TYR A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 LYS A 10 REMARK 465 THR A 11 REMARK 465 LEU A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 THR A 18 REMARK 465 GLU A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 THR A 25 REMARK 465 ALA A 26 REMARK 465 GLU A 27 REMARK 465 LYS A 28 REMARK 465 VAL A 29 REMARK 465 PHE A 30 REMARK 465 LYS A 31 REMARK 465 GLN A 32 REMARK 465 TYR A 33 REMARK 465 ALA A 34 REMARK 465 ASN A 35 REMARK 465 ASP A 36 REMARK 465 ASN A 37 REMARK 465 GLY A 38 REMARK 465 VAL A 39 REMARK 465 ASP A 40 REMARK 465 GLY A 41 REMARK 465 GLU A 42 REMARK 465 TRP A 43 REMARK 465 THR A 44 REMARK 465 TYR A 45 REMARK 465 ASP A 46 REMARK 465 ASP A 47 REMARK 465 ALA A 48 REMARK 465 THR A 49 REMARK 465 LYS A 50 REMARK 465 THR A 51 REMARK 465 PHE A 52 REMARK 465 THR A 53 REMARK 465 VAL A 54 REMARK 465 THR A 55 REMARK 465 GLU A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 ASN A 59 REMARK 465 GLU A 60 REMARK 465 PHE A 61 REMARK 465 GLU A 100 REMARK 465 HIS A 101 REMARK 465 HIS A 102 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 SER B 199 REMARK 465 HIS B 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 63 45.87 -108.17 REMARK 500 1 SER A 91 70.50 53.89 REMARK 500 1 LYS A 98 75.30 -103.75 REMARK 500 1 ILE B 261 95.58 -68.89 REMARK 500 2 SER A 91 70.14 51.09 REMARK 500 2 ILE B 261 95.87 -68.69 REMARK 500 3 LEU A 63 48.08 -106.15 REMARK 500 4 ILE B 261 95.78 -68.77 REMARK 500 5 LEU A 63 45.36 -108.46 REMARK 500 5 LYS A 90 -176.52 -69.88 REMARK 500 5 SER A 91 70.21 54.25 REMARK 500 5 LYS A 98 76.85 -106.19 REMARK 500 6 LEU A 63 47.32 -92.67 REMARK 500 6 SER A 91 70.23 53.31 REMARK 500 7 SER A 91 70.75 46.99 REMARK 500 7 ILE B 261 95.91 -68.60 REMARK 500 8 SER A 91 70.76 47.64 REMARK 500 9 ILE B 261 95.80 -68.69 REMARK 500 10 SER A 91 70.47 47.09 REMARK 500 10 ILE B 261 97.31 -68.75 REMARK 500 11 SER A 91 70.17 46.83 REMARK 500 11 LYS A 94 -66.51 72.25 REMARK 500 11 LYS A 98 75.36 -110.03 REMARK 500 11 ILE B 261 95.81 -68.55 REMARK 500 12 ILE B 261 96.50 -68.73 REMARK 500 13 ILE B 261 96.32 -68.58 REMARK 500 14 ILE B 261 96.45 -68.54 REMARK 500 15 LEU A 63 47.90 -104.48 REMARK 500 15 SER A 91 70.72 46.20 REMARK 500 16 LEU A 63 48.33 -89.81 REMARK 500 16 LYS A 98 94.17 -62.83 REMARK 500 16 ILE B 261 95.65 -68.15 REMARK 500 17 LEU A 63 49.64 -89.09 REMARK 500 17 ASP B 221 174.83 -59.77 REMARK 500 20 LEU A 63 50.76 -99.89 REMARK 500 20 ILE B 261 95.56 -68.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19394 RELATED DB: BMRB DBREF 2MBB A 3 56 UNP P06654 SPG1_STRSG 229 282 DBREF 2MBB A 59 98 UNP Q9UNA4 POLI_HUMAN 516 555 DBREF 2MBB B 201 276 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 2MBB MET A 1 UNP P06654 EXPRESSION TAG SEQADV 2MBB GLN A 2 UNP P06654 EXPRESSION TAG SEQADV 2MBB GLY A 57 UNP P06654 LINKER SEQADV 2MBB SER A 58 UNP P06654 LINKER SEQADV 2MBB LEU A 99 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB GLU A 100 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 101 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 102 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 103 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 104 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 105 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB HIS A 106 UNP Q9UNA4 EXPRESSION TAG SEQADV 2MBB SER B 199 UNP P0CG47 EXPRESSION TAG SEQADV 2MBB HIS B 200 UNP P0CG47 EXPRESSION TAG SEQRES 1 A 106 MET GLN TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS SEQRES 2 A 106 GLY GLU THR THR THR GLU ALA VAL ASP ALA ALA THR ALA SEQRES 3 A 106 GLU LYS VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL SEQRES 4 A 106 ASP GLY GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE SEQRES 5 A 106 THR VAL THR GLU GLY SER ASN GLU PHE PRO LEU CYS SER SEQRES 6 A 106 LEU PRO GLU GLY VAL ASP GLN GLU VAL PHE LYS GLN LEU SEQRES 7 A 106 PRO VAL ASP ILE GLN GLU GLU ILE LEU SER GLY LYS SER SEQRES 8 A 106 ARG GLU LYS PHE GLN GLY LYS LEU GLU HIS HIS HIS HIS SEQRES 9 A 106 HIS HIS SEQRES 1 B 78 SER HIS MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS SEQRES 2 B 78 THR ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 B 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO SEQRES 4 B 78 PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU SEQRES 5 B 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 B 78 GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HELIX 1 1 ASP A 71 LEU A 78 1 8 HELIX 2 2 PRO A 79 SER A 88 1 10 HELIX 3 3 THR B 222 GLU B 234 1 13 HELIX 4 4 THR B 255 ASN B 260 5 6 SHEET 1 A 5 THR B 212 GLU B 216 0 SHEET 2 A 5 GLN B 202 LYS B 206 -1 N ILE B 203 O LEU B 215 SHEET 3 A 5 THR B 266 LEU B 271 1 O LEU B 267 N LYS B 206 SHEET 4 A 5 GLN B 241 PHE B 245 -1 N ARG B 242 O VAL B 270 SHEET 5 A 5 LYS B 248 GLN B 249 -1 O LYS B 248 N PHE B 245 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1