HEADER HYDROLASE 29-JUL-13 2MBC TITLE SOLUTION STRUCTURE OF HUMAN HOLO-PRL-3 IN COMPLEX WITH VANADATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE TYPE IVA 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-162; COMPND 5 SYNONYM: PRL-R, PROTEIN-TYROSINE PHOSPHATASE 4A3, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE OF REGENERATING LIVER 3, PRL-3; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTP4A3, PRL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21B KEYWDS HOLO-PRL-3, VANADATE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.JEONG,D.KANG,J.KIM,S.SHIN,B.JIN,C.LEE,E.KIM,Y.H.JEON,Y.KIM REVDAT 3 14-JUN-23 2MBC 1 REMARK REVDAT 2 24-JAN-18 2MBC 1 JRNL REVDAT 1 09-OCT-13 2MBC 0 JRNL AUTH K.W.JEONG,D.I.KANG,E.LEE,A.SHIN,B.JIN,Y.G.PARK,C.K.LEE, JRNL AUTH 2 E.H.KIM,Y.H.JEON,E.E.KIM,Y.KIM JRNL TITL STRUCTURE AND BACKBONE DYNAMICS OF VANADATE-BOUND PRL-3: JRNL TITL 2 COMPARISON OF 15N NUCLEAR MAGNETIC RESONANCE RELAXATION JRNL TITL 3 PROFILES OF FREE AND VANADATE-BOUND PRL-3. JRNL REF BIOCHEMISTRY V. 53 4814 2014 JRNL REFN ISSN 1520-4995 JRNL PMID 24983822 JRNL DOI 10.1021/BI5003844 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CYANA, XPLOR_NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103437. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50MM HEPES-1, 100MM NACL-2, 10MM REMARK 210 DTT-3, 3MM SODIUM ORTHOVANADATE- REMARK 210 4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HN(CO)CA; 3D HNHA; 3D HCCH-TOCSY; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -40.23 -163.89 REMARK 500 1 ARG A 3 -170.61 61.15 REMARK 500 1 MET A 4 -169.24 63.49 REMARK 500 1 ASN A 5 157.64 64.22 REMARK 500 1 PRO A 9 -165.31 -69.82 REMARK 500 1 HIS A 16 35.74 -142.57 REMARK 500 1 PRO A 25 83.46 -69.80 REMARK 500 1 THR A 26 173.71 58.95 REMARK 500 1 LEU A 30 -51.44 76.87 REMARK 500 1 THR A 43 37.44 -89.87 REMARK 500 1 VAL A 46 35.83 -75.44 REMARK 500 1 ARG A 47 0.86 -65.55 REMARK 500 1 VAL A 48 77.40 -68.58 REMARK 500 1 CYS A 49 -164.76 179.16 REMARK 500 1 THR A 52 39.35 -150.97 REMARK 500 1 PRO A 57 -70.87 -69.76 REMARK 500 1 LEU A 58 -19.49 -49.31 REMARK 500 1 PRO A 69 41.21 -69.79 REMARK 500 1 ASP A 72 154.22 64.19 REMARK 500 1 ALA A 74 162.69 61.16 REMARK 500 1 PRO A 77 90.91 -69.74 REMARK 500 1 PRO A 96 86.88 -69.80 REMARK 500 1 SER A 98 -171.03 -59.51 REMARK 500 1 VAL A 105 -96.41 -81.24 REMARK 500 1 LEU A 108 -163.14 32.68 REMARK 500 1 ALA A 111 -75.03 -33.57 REMARK 500 1 ARG A 137 106.83 -177.38 REMARK 500 1 ASN A 142 153.22 -36.01 REMARK 500 1 SER A 143 -158.82 109.76 REMARK 500 1 ARG A 159 -169.44 77.42 REMARK 500 2 ARG A 3 106.02 -179.05 REMARK 500 2 MET A 4 79.27 56.64 REMARK 500 2 ARG A 6 73.86 -113.67 REMARK 500 2 PRO A 9 -165.43 -69.78 REMARK 500 2 HIS A 16 43.27 -141.28 REMARK 500 2 PRO A 25 97.62 -69.75 REMARK 500 2 THR A 26 -77.34 -153.03 REMARK 500 2 SER A 31 -70.17 -85.81 REMARK 500 2 THR A 43 42.11 -89.04 REMARK 500 2 VAL A 46 39.20 -75.40 REMARK 500 2 ARG A 47 1.39 -66.62 REMARK 500 2 CYS A 49 -166.94 179.13 REMARK 500 2 GLU A 50 76.62 -68.06 REMARK 500 2 THR A 52 32.94 -179.54 REMARK 500 2 PRO A 57 -70.30 -69.77 REMARK 500 2 LEU A 58 -19.69 -49.38 REMARK 500 2 PRO A 69 57.56 -69.75 REMARK 500 2 ASP A 72 -33.33 178.59 REMARK 500 2 PRO A 96 86.50 -69.73 REMARK 500 2 SER A 98 -170.61 -59.43 REMARK 500 REMARK 500 THIS ENTRY HAS 602 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V3A RELATED DB: PDB REMARK 900 RELATED ID: 1R6H RELATED DB: PDB REMARK 900 RELATED ID: 19395 RELATED DB: BMRB DBREF 2MBC A 1 162 UNP O75365 TP4A3_HUMAN 1 162 SEQRES 1 A 162 MET ALA ARG MET ASN ARG PRO ALA PRO VAL GLU VAL SER SEQRES 2 A 162 TYR LYS HIS MET ARG PHE LEU ILE THR HIS ASN PRO THR SEQRES 3 A 162 ASN ALA THR LEU SER THR PHE ILE GLU ASP LEU LYS LYS SEQRES 4 A 162 TYR GLY ALA THR THR VAL VAL ARG VAL CYS GLU VAL THR SEQRES 5 A 162 TYR ASP LYS THR PRO LEU GLU LYS ASP GLY ILE THR VAL SEQRES 6 A 162 VAL ASP TRP PRO PHE ASP ASP GLY ALA PRO PRO PRO GLY SEQRES 7 A 162 LYS VAL VAL GLU ASP TRP LEU SER LEU VAL LYS ALA LYS SEQRES 8 A 162 PHE CYS GLU ALA PRO GLY SER CYS VAL ALA VAL HIS CYS SEQRES 9 A 162 VAL ALA GLY LEU GLY ARG ALA PRO VAL LEU VAL ALA LEU SEQRES 10 A 162 ALA LEU ILE GLU SER GLY MET LYS TYR GLU ASP ALA ILE SEQRES 11 A 162 GLN PHE ILE ARG GLN LYS ARG ARG GLY ALA ILE ASN SER SEQRES 12 A 162 LYS GLN LEU THR TYR LEU GLU LYS TYR ARG PRO LYS GLN SEQRES 13 A 162 ARG LEU ARG PHE LYS ASP HELIX 1 1 LEU A 30 TYR A 40 1 11 HELIX 2 2 THR A 56 ASP A 61 1 6 HELIX 3 3 LYS A 79 ALA A 95 1 17 HELIX 4 4 GLY A 109 GLY A 123 1 15 HELIX 5 5 LYS A 125 LYS A 136 1 12 HELIX 6 6 SER A 143 TYR A 152 1 10 SHEET 1 A 3 VAL A 10 SER A 13 0 SHEET 2 A 3 ARG A 18 ILE A 21 -1 O PHE A 19 N VAL A 12 SHEET 3 A 3 VAL A 100 VAL A 102 1 O VAL A 100 N LEU A 20 SHEET 1 B 2 THR A 44 VAL A 45 0 SHEET 2 B 2 THR A 64 VAL A 65 1 O THR A 64 N VAL A 45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1