HEADER PROTEIN BINDING 30-JUL-13 2MBE TITLE BACKBONE 1H AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR THE FIRST DOMAIN OF TITLE 2 FAT10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIUBIQUITIN, UBIQUITIN-LIKE PROTEIN FAT10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBD, FAT10; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET32A KEYWDS FAT10, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR W.WANG,L.LIM,H.QIN REVDAT 4 14-JUN-23 2MBE 1 REMARK SEQADV REVDAT 3 24-DEC-14 2MBE 1 JRNL REVDAT 2 19-NOV-14 2MBE 1 JRNL REVDAT 1 27-AUG-14 2MBE 0 JRNL AUTH S.S.THENG,W.WANG,W.C.MAH,C.CHAN,J.ZHUO,Y.GAO,H.QIN,L.LIM, JRNL AUTH 2 S.S.CHONG,J.SONG,C.G.LEE JRNL TITL DISRUPTION OF FAT10-MAD2 BINDING INHIBITS TUMOR PROGRESSION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E5282 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 25422469 JRNL DOI 10.1073/PNAS.1403383111 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, AMBER REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), CASE, REMARK 3 DARDEN, CHEATHAM, III, SIMMERLING, WANG, DUKE, LUO, REMARK 3 AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103439. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.01 MM SODIUM PHOSPHATE-1, 0.01 REMARK 210 MM DTT-2, 0.4 MM [U-100% 15N] REMARK 210 ENTITY-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TALOS, CYANA, TOPSPIN REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 21 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 1 SER A 57 N - CA - CB ANGL. DEV. = -10.3 DEGREES REMARK 500 2 SER A 57 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 3 SER A 7 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 3 ARG A 53 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 3 SER A 55 N - CA - CB ANGL. DEV. = -18.8 DEGREES REMARK 500 3 SER A 57 N - CA - CB ANGL. DEV. = -9.6 DEGREES REMARK 500 5 SER A 57 N - CA - CB ANGL. DEV. = -19.1 DEGREES REMARK 500 5 GLU A 64 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 7 SER A 57 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 8 SER A 57 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 7 -155.48 110.59 REMARK 500 1 TYR A 20 -94.49 -124.65 REMARK 500 1 VAL A 38 105.11 114.68 REMARK 500 1 ASP A 40 -34.49 66.35 REMARK 500 1 LEU A 45 102.75 -171.45 REMARK 500 1 SER A 47 15.95 59.82 REMARK 500 1 SER A 55 48.70 -164.85 REMARK 500 1 SER A 57 20.41 18.94 REMARK 500 1 ASP A 62 38.72 -144.20 REMARK 500 2 SER A 7 -161.42 165.90 REMARK 500 2 TYR A 20 -96.48 -124.36 REMARK 500 2 SER A 32 14.67 59.07 REMARK 500 2 VAL A 38 102.85 -171.12 REMARK 500 2 GLN A 39 -70.65 -88.07 REMARK 500 2 ASP A 40 -43.18 -178.76 REMARK 500 2 PRO A 52 -171.45 -61.08 REMARK 500 2 ARG A 53 88.67 26.55 REMARK 500 2 SER A 55 145.56 26.76 REMARK 500 2 LEU A 56 -62.01 -100.84 REMARK 500 2 SER A 58 17.16 52.63 REMARK 500 2 LYS A 63 -74.97 -159.35 REMARK 500 3 SER A 7 -172.19 102.81 REMARK 500 3 TYR A 20 -100.47 -112.24 REMARK 500 3 SER A 32 10.96 59.36 REMARK 500 3 VAL A 38 128.09 -174.94 REMARK 500 3 ASP A 40 -40.52 -162.45 REMARK 500 3 LEU A 45 108.08 -162.49 REMARK 500 3 SER A 47 14.77 59.90 REMARK 500 3 PRO A 52 -149.22 -71.91 REMARK 500 3 ARG A 53 38.07 25.27 REMARK 500 3 ARG A 54 -31.20 -155.11 REMARK 500 3 SER A 55 -163.04 -5.16 REMARK 500 3 SER A 57 29.50 26.00 REMARK 500 4 SER A 7 -155.93 113.03 REMARK 500 4 TYR A 20 -74.08 -124.40 REMARK 500 4 SER A 32 12.64 59.07 REMARK 500 4 VAL A 38 132.29 -176.72 REMARK 500 4 ASP A 40 -38.30 -160.27 REMARK 500 4 LEU A 45 111.26 -170.84 REMARK 500 4 SER A 47 14.56 59.32 REMARK 500 4 ARG A 54 92.13 111.72 REMARK 500 4 LEU A 56 -72.99 -81.89 REMARK 500 4 SER A 57 60.17 -150.21 REMARK 500 4 LYS A 63 138.81 -171.39 REMARK 500 5 SER A 7 -157.14 168.54 REMARK 500 5 TYR A 20 13.03 27.28 REMARK 500 5 ASP A 21 47.52 -75.43 REMARK 500 5 VAL A 38 115.84 116.24 REMARK 500 5 GLN A 39 -68.22 -103.29 REMARK 500 5 ASP A 40 -39.20 -173.87 REMARK 500 REMARK 500 THIS ENTRY HAS 85 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 54 SER A 55 3 -143.77 REMARK 500 LEU A 56 SER A 57 5 -140.80 REMARK 500 LYS A 63 GLU A 64 5 -148.83 REMARK 500 LEU A 56 SER A 57 7 -149.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 ARG A 6 10.86 REMARK 500 1 SER A 7 -12.48 REMARK 500 1 ASP A 21 -20.59 REMARK 500 1 PRO A 37 11.63 REMARK 500 2 ASP A 21 -19.50 REMARK 500 2 PRO A 52 -14.47 REMARK 500 2 ARG A 54 -16.30 REMARK 500 2 SER A 55 15.44 REMARK 500 2 SER A 57 -11.23 REMARK 500 3 ARG A 6 11.58 REMARK 500 3 SER A 7 -10.37 REMARK 500 3 ASP A 21 -20.47 REMARK 500 3 PRO A 52 -11.72 REMARK 500 3 ARG A 54 -14.07 REMARK 500 4 SER A 7 -10.65 REMARK 500 4 TYR A 20 10.35 REMARK 500 4 ASP A 21 12.93 REMARK 500 4 SER A 57 22.18 REMARK 500 5 PRO A 37 12.45 REMARK 500 5 LEU A 56 -10.23 REMARK 500 5 LYS A 63 -13.27 REMARK 500 5 GLU A 64 -10.60 REMARK 500 6 ARG A 6 11.41 REMARK 500 6 SER A 7 -12.70 REMARK 500 6 PRO A 37 12.62 REMARK 500 6 LEU A 56 -12.77 REMARK 500 6 ASP A 62 -13.48 REMARK 500 7 ARG A 6 11.74 REMARK 500 7 SER A 7 -12.17 REMARK 500 7 ASP A 21 -13.64 REMARK 500 7 PRO A 37 13.95 REMARK 500 7 ASP A 62 -13.16 REMARK 500 8 ARG A 6 11.78 REMARK 500 8 SER A 7 -11.36 REMARK 500 8 ASP A 21 -18.06 REMARK 500 8 PRO A 37 13.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19397 RELATED DB: BMRB DBREF 2MBE A 1 75 UNP O15205 UBD_HUMAN 8 82 SEQADV 2MBE LEU A 24 UNP O15205 LYS 31 CONFLICT SEQRES 1 A 75 LEU CYS VAL HIS VAL ARG SER GLU GLU TRP ASP LEU MET SEQRES 2 A 75 THR PHE ASP ALA ASN PRO TYR ASP SER VAL LEU LYS ILE SEQRES 3 A 75 LYS GLU HIS VAL ARG SER LYS THR LYS VAL PRO VAL GLN SEQRES 4 A 75 ASP GLN VAL LEU LEU LEU GLY SER LYS ILE LEU LYS PRO SEQRES 5 A 75 ARG ARG SER LEU SER SER TYR GLY ILE ASP LYS GLU LYS SEQRES 6 A 75 THR ILE HIS LEU THR LEU LYS VAL VAL LYS HELIX 1 1 SER A 22 HIS A 29 1 8 SHEET 1 A 5 MET A 13 THR A 14 0 SHEET 2 A 5 CYS A 2 ARG A 6 -1 N VAL A 3 O MET A 13 SHEET 3 A 5 ILE A 67 LYS A 72 1 O ILE A 67 N HIS A 4 SHEET 4 A 5 VAL A 42 LEU A 44 -1 N VAL A 42 O LYS A 72 SHEET 5 A 5 ILE A 49 LEU A 50 -1 O LEU A 50 N LEU A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1