HEADER CONTRACTILE PROTEIN 07-AUG-13 2MBX TITLE STRUCTURE, DYNAMICS AND STABILITY OF ALLERGEN COD PARVALBUMIN GAD M 1 TITLE 2 BY SOLUTION AND HIGH-PRESSURE NMR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARVALBUMIN BETA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GADUS MORHUA; SOURCE 3 ORGANISM_COMMON: ATLANTIC COD; SOURCE 4 ORGANISM_TAXID: 8049; SOURCE 5 EXPRESSION_SYSTEM: GADUS MORHUA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 8049; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET17B KEYWDS ALLERGEN, PARVALBUMIN, EF-HAND, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.H.MORAES,D.ACKERBAUER,M.BUBLIN,F.FERREIRA,F.C.L.ALMEIDA, AUTHOR 2 H.BREITENEDER,A.VALENTE REVDAT 4 15-MAY-24 2MBX 1 REMARK REVDAT 3 14-JUN-23 2MBX 1 REMARK LINK REVDAT 2 19-NOV-14 2MBX 1 JRNL REVDAT 1 20-AUG-14 2MBX 0 JRNL AUTH A.H.MORAES,D.ACKERBAUER,M.KOSTADINOVA,M.BUBLIN, JRNL AUTH 2 G.A.DE OLIVEIRA,F.FERREIRA,F.C.ALMEIDA,H.BREITENEDER, JRNL AUTH 3 A.P.VALENTE JRNL TITL SOLUTION AND HIGH-PRESSURE NMR STUDIES OF THE STRUCTURE, JRNL TITL 2 DYNAMICS, AND STABILITY OF THE CROSS-REACTIVE ALLERGENIC COD JRNL TITL 3 PARVALBUMIN GAD M 1. JRNL REF PROTEINS V. 82 3032 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 25116395 JRNL DOI 10.1002/PROT.24664 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.H.MORAES,D.ACKERBAUER,M.KOSTADINOVA,M.BUBLIN,F.FERREIRA, REMARK 1 AUTH 2 F.C.ALMEIDA,H.BREITENEDER,A.P.VALENTE REMARK 1 TITL (1)H, (13)C AND (15)N RESONANCE ASSIGNMENTS AND SECOND REMARK 1 TITL 2 STRUCTURE INFORMATION OF GAD M 1: A BETA-PARVALBUMIN REMARK 1 TITL 3 ALLERGEN FROM ATLANTIC COD (GADUS MORHUA). REMARK 1 REF BIOMOL.NMR ASSIGN. V. 7 133 2013 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 22585088 REMARK 1 DOI 10.1007/S12104-012-9393-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TALOS +, CNS REMARK 3 AUTHORS : YANG SHEN (TALOS), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103454. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6-1.0 UM [U-100% 13C; U-100% REMARK 210 15N] GAD M 1, 10 MM SODIUM REMARK 210 PHOSPHATE, 0.5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC NH2 ONLY; 2D 1H REMARK 210 -13C HSQC ALIPHATIC; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HN(CO)CA; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS A 27 OE2 GLU A 82 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 19 45.37 -81.95 REMARK 500 1 SER A 24 51.02 -108.70 REMARK 500 1 PHE A 25 58.00 -102.26 REMARK 500 1 LYS A 55 63.83 60.74 REMARK 500 1 ASP A 57 -3.26 70.82 REMARK 500 1 ASP A 91 94.12 -60.06 REMARK 500 2 PHE A 3 -79.47 64.63 REMARK 500 2 CYS A 19 47.06 -87.06 REMARK 500 2 ALA A 21 -157.29 -166.56 REMARK 500 2 LYS A 55 65.01 62.53 REMARK 500 2 ASP A 57 -1.12 71.63 REMARK 500 2 ASP A 80 -108.42 57.92 REMARK 500 2 ASP A 91 99.21 -65.96 REMARK 500 3 ASP A 80 -98.20 54.38 REMARK 500 4 PHE A 3 49.87 -86.60 REMARK 500 4 ALA A 4 142.58 70.00 REMARK 500 4 ASP A 57 17.81 52.13 REMARK 500 4 SER A 79 75.68 -177.56 REMARK 500 4 ASP A 80 -145.98 176.69 REMARK 500 4 ASP A 91 97.74 -59.46 REMARK 500 5 ASP A 80 -131.09 63.73 REMARK 500 5 ASP A 91 98.74 -60.32 REMARK 500 6 ASP A 52 61.47 -100.27 REMARK 500 6 LYS A 55 64.80 64.76 REMARK 500 6 ASP A 57 -1.41 74.41 REMARK 500 6 ASP A 80 -130.85 59.93 REMARK 500 7 PHE A 3 76.52 46.93 REMARK 500 7 SER A 24 79.61 -113.36 REMARK 500 7 ASP A 52 76.80 -104.16 REMARK 500 7 ASP A 80 -126.84 72.12 REMARK 500 7 ASP A 91 101.98 -59.92 REMARK 500 8 ALA A 2 9.24 -155.90 REMARK 500 8 PHE A 3 -77.82 -110.41 REMARK 500 8 ASP A 57 -2.96 74.28 REMARK 500 8 ASP A 80 -131.55 56.55 REMARK 500 9 SER A 56 23.53 -142.05 REMARK 500 9 ASP A 57 -1.46 78.54 REMARK 500 9 ASP A 80 -140.95 63.06 REMARK 500 10 ALA A 2 44.64 -83.16 REMARK 500 10 SER A 24 48.86 -96.97 REMARK 500 10 ASP A 57 -2.41 72.47 REMARK 500 10 SER A 72 -169.30 -127.87 REMARK 500 10 ASP A 80 -149.50 67.76 REMARK 500 10 ASP A 91 101.35 -59.33 REMARK 500 11 CYS A 19 34.35 -87.84 REMARK 500 11 LYS A 55 65.50 63.65 REMARK 500 11 ASP A 80 -146.18 56.62 REMARK 500 12 ASP A 57 -1.16 73.59 REMARK 500 12 ASP A 80 -113.34 64.73 REMARK 500 13 CYS A 19 62.64 -116.18 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 56 OG REMARK 620 2 PHE A 58 O 88.0 REMARK 620 3 GLU A 63 OE1 135.9 135.7 REMARK 620 4 GLU A 63 OE2 118.6 83.6 70.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18113 RELATED DB: BMRB DBREF 2MBX A 1 109 UNP Q90YK9 PRVB_GADMO 1 109 SEQRES 1 A 109 MET ALA PHE ALA GLY ILE LEU ASN ASP ALA ASP ILE THR SEQRES 2 A 109 ALA ALA LEU ALA ALA CYS LYS ALA GLU GLY SER PHE ASP SEQRES 3 A 109 HIS LYS ALA PHE PHE THR LYS VAL GLY LEU ALA ALA LYS SEQRES 4 A 109 SER PRO ALA ASP ILE LYS LYS VAL PHE GLU ILE ILE ASP SEQRES 5 A 109 GLN ASP LYS SER ASP PHE VAL GLU GLU ASP GLU LEU LYS SEQRES 6 A 109 LEU PHE LEU GLN ASN PHE SER ALA GLY ALA ARG ALA LEU SEQRES 7 A 109 SER ASP ALA GLU THR LYS VAL PHE LEU LYS ALA GLY ASP SEQRES 8 A 109 SER ASP GLY ASP GLY LYS ILE GLY VAL ASP GLU PHE GLY SEQRES 9 A 109 ALA MET ILE LYS ALA HET CA A 201 1 HET CA A 202 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 ASN A 8 CYS A 19 1 12 HELIX 2 2 ASP A 26 VAL A 34 1 9 HELIX 3 3 GLY A 35 LYS A 39 5 5 HELIX 4 4 SER A 40 ASP A 52 1 13 HELIX 5 5 GLU A 60 SER A 72 1 13 HELIX 6 6 SER A 79 ASP A 91 1 13 HELIX 7 7 GLY A 99 ALA A 109 1 11 LINK OG SER A 56 CA CA A 201 1555 1555 1.95 LINK O PHE A 58 CA CA A 201 1555 1555 1.96 LINK OE1 GLU A 63 CA CA A 201 1555 1555 1.82 LINK OE2 GLU A 63 CA CA A 201 1555 1555 1.88 LINK OE2 GLU A 102 CA CA A 202 1555 1555 2.98 SITE 1 AC1 4 ASP A 52 SER A 56 PHE A 58 GLU A 63 SITE 1 AC2 5 ASP A 91 ASP A 93 ASP A 95 LYS A 97 SITE 2 AC2 5 GLU A 102 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1