HEADER DNA 20-AUG-13 2MCJ TITLE NMR STRUCTURE OF SPERMINE MODIFIED DNA DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA_(5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA_(5'-D(*CP*AP*GP*(N4S)P*CP*GP*AP*C)-3'); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: SYNTHESIZED USING PHOSPHORAMIDITE CHEMISTRY KEYWDS DNA, NUCELIC ACID, POLIAMINE, SPERMINE, POLIAMINOOLIGONUCLEOTIDE, DNA KEYWDS 2 DUPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.BRZEZINSKA,Z.GDANIEC,L.POPENDA,W.T.MARKIEWICZ REVDAT 2 01-MAY-24 2MCJ 1 REMARK LINK REVDAT 1 22-JAN-14 2MCJ 0 JRNL AUTH J.BRZEZINSKA,Z.GDANIEC,L.POPENDA,W.T.MARKIEWICZ JRNL TITL POLYAMINOOLIGONUCLEOTIDE: NMR STRUCTURE OF DUPLEX DNA JRNL TITL 2 CONTAINING A NUCLEOSIDE WITH SPERMINE RESIDUE, JRNL TITL 3 N-[4,9,13-TRIAZATRIDECAN-1-YL]-2'-DEOXYCYTIDINE. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1840 1163 2014 JRNL REFN ISSN 0006-3002 JRNL PMID 24361616 JRNL DOI 10.1016/J.BBAGEN.2013.12.008 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH V2.22, X-PLOR NIH V2.22 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103475. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 283 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 60; 60 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM DNA (5' REMARK 210 -D(*GP*TP*CP*GP*GP*CP*TP*G)-3'), 0.5 MM DNA (5'-D(*CP*AP*GP*CP* REMARK 210 (N4S)P*GP*AP*C)-3'), 100 % [U-100% 2H] D2O, 50 MM SODIUM REMARK 210 CHLORIDE, 10 MM SODIUM PHOSPHATE, 0.1 MM EDTA, 100% D2O; 0.5 MM REMARK 210 DNA (5'-D(*GP*TP*CP*GP*GP*CP*TP*G)-3'), 0.5 MM DNA (5'-D(*CP*AP* REMARK 210 GP*CP*(N4S)P*GP*AP*C)-3'), 10 % [U-100% 2H] D2O, 90 % H2O, 50 MM REMARK 210 SODIUM CHLORIDE, 10 MM SODIUM PHOSPHATE, 0.1 MM EDTA, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-13C HSQC; REMARK 210 2D 1H-31P HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN V2.0, FELIX V2002 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19441 RELATED DB: BMRB DBREF 2MCJ A 1 8 PDB 2MCJ 2MCJ 1 8 DBREF 2MCJ B 1 8 PDB 2MCJ 2MCJ 1 8 SEQRES 1 A 8 DG DT DC DG DG DC DT DG SEQRES 1 B 8 DC DA DG N4S DC DG DA DC HET N4S B 4 66 HETNAM N4S N-[3-({4-[(3-AMINOPROPYL)AMINO]BUTYL}AMINO)PROPYL]-2'- HETNAM 2 N4S DEOXYCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) FORMUL 2 N4S C19 H37 N6 O7 P LINK O3' DG B 3 P N4S B 4 1555 1555 1.61 LINK O3' N4S B 4 P DC B 5 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1