HEADER IMMUNE SYSTEM 27-AUG-13 2MCZ TITLE CR1 SUSHI DOMAINS 1 AND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUSHI DOMAINS 1 AND 2(UNP RESIDUES 41-163); COMPND 5 SYNONYM: C3B/C4B RECEPTOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CR1, C3BR; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZAB KEYWDS CR1, PFRH4, MALARIA, CCP, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.J.PARK,M.J.GUARIENTO,M.MACIEJEWSKI,R.HAUART,W.THAM,A.F.COWMAN, AUTHOR 2 C.Q.SCHMIDT,H.MARTENS,K.M.LISZEWSKI,D.HOURCADE,P.N.BARLOW, AUTHOR 3 J.P.ATKINSON REVDAT 4 14-JUN-23 2MCZ 1 REMARK SEQADV REVDAT 3 22-JAN-14 2MCZ 1 JRNL REVDAT 2 04-DEC-13 2MCZ 1 JRNL REVDAT 1 13-NOV-13 2MCZ 0 JRNL AUTH H.J.PARK,M.GUARIENTO,M.MACIEJEWSKI,R.HAUHART,W.H.THAM, JRNL AUTH 2 A.F.COWMAN,C.Q.SCHMIDT,H.D.MERTENS,M.K.LISZEWSKI, JRNL AUTH 3 D.E.HOURCADE,P.N.BARLOW,J.P.ATKINSON JRNL TITL USING MUTAGENESIS AND STRUCTURAL BIOLOGY TO MAP THE BINDING JRNL TITL 2 SITE FOR THE PLASMODIUM FALCIPARUM MEROZOITE PROTEIN PFRH4 JRNL TITL 3 ON THE HUMAN IMMUNE ADHERENCE RECEPTOR. JRNL REF J.BIOL.CHEM. V. 289 450 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24214979 JRNL DOI 10.1074/JBC.M113.520346 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000103489. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.56 MM [U-99% 13C; U-99% 15N] REMARK 210 CR1_1-2, 20 MM [U-100% 2H] REMARK 210 SODIUM ACETATE, 90% H2O/10% D2O; REMARK 210 0.56 MM [U-99% 13C; U-99% 15N] REMARK 210 CR1_1-2, 20 MM [U-100% 2H] REMARK 210 SODIUM ACETATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 2D 1H- REMARK 210 13C HSQC; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AZARA, X-PLOR NIH, CCPNMR REMARK 210 ANALYSIS, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A -5 REMARK 465 ALA A -4 REMARK 465 GLU A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 64 HE1 TRP A 113 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 CYS A 2 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 2 CYS A 45 CA - CB - SG ANGL. DEV. = 10.8 DEGREES REMARK 500 6 CYS A 2 CA - CB - SG ANGL. DEV. = 7.8 DEGREES REMARK 500 6 CYS A 45 CA - CB - SG ANGL. DEV. = 10.4 DEGREES REMARK 500 13 CYS A 2 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 13 CYS A 45 CA - CB - SG ANGL. DEV. = 11.7 DEGREES REMARK 500 14 CYS A 2 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 14 CYS A 45 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 15 CYS A 2 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 15 CYS A 45 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 17 CYS A 63 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 17 CYS A 104 CA - CB - SG ANGL. DEV. = 7.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 4 116.15 68.20 REMARK 500 1 GLU A 6 168.59 142.78 REMARK 500 1 PHE A 20 -35.92 65.41 REMARK 500 1 ASP A 68 147.43 39.78 REMARK 500 1 THR A 117 154.58 165.85 REMARK 500 2 ALA A 4 131.25 65.83 REMARK 500 2 GLU A 6 173.92 160.92 REMARK 500 2 ARG A 39 73.96 49.65 REMARK 500 2 PHE A 41 -71.93 -79.74 REMARK 500 2 CYS A 45 38.03 -67.53 REMARK 500 2 VAL A 50 -98.66 -104.45 REMARK 500 2 ASN A 65 48.42 -143.47 REMARK 500 2 ASP A 68 153.36 56.88 REMARK 500 2 ILE A 80 88.16 53.74 REMARK 500 2 CYS A 90 -51.81 -124.65 REMARK 500 2 THR A 117 158.03 164.08 REMARK 500 3 ALA A 4 129.74 66.24 REMARK 500 3 GLU A 6 178.42 134.78 REMARK 500 3 GLU A 19 -59.45 -120.24 REMARK 500 3 PHE A 20 -33.32 68.85 REMARK 500 3 PHE A 41 -81.14 -128.49 REMARK 500 3 CYS A 45 27.20 -52.66 REMARK 500 3 SER A 49 21.80 48.83 REMARK 500 3 VAL A 50 -84.65 -104.88 REMARK 500 3 ASP A 68 151.48 48.45 REMARK 500 3 ILE A 80 78.81 63.96 REMARK 500 3 THR A 117 143.16 167.29 REMARK 500 4 ALA A 4 135.35 71.47 REMARK 500 4 GLU A 6 -168.07 145.35 REMARK 500 4 CYS A 45 43.65 -60.85 REMARK 500 4 SER A 49 21.72 49.29 REMARK 500 4 VAL A 50 -92.40 -100.00 REMARK 500 4 ALA A 54 25.69 -66.84 REMARK 500 4 ASP A 56 22.65 49.66 REMARK 500 4 ASP A 68 154.19 50.09 REMARK 500 4 ILE A 77 -75.10 -94.17 REMARK 500 4 ILE A 80 79.31 83.62 REMARK 500 4 THR A 117 141.47 170.84 REMARK 500 5 ALA A 4 111.90 60.10 REMARK 500 5 GLU A 6 177.94 140.09 REMARK 500 5 ILE A 24 150.85 161.82 REMARK 500 5 ARG A 39 -167.38 -106.01 REMARK 500 5 CYS A 45 70.96 -65.98 REMARK 500 5 SER A 49 13.33 55.25 REMARK 500 5 VAL A 50 -93.76 -97.01 REMARK 500 5 ALA A 54 70.50 -104.36 REMARK 500 5 ASP A 56 18.65 54.05 REMARK 500 5 ASN A 65 77.30 -156.53 REMARK 500 5 ASP A 68 147.32 56.03 REMARK 500 5 ILE A 80 85.36 65.27 REMARK 500 REMARK 500 THIS ENTRY HAS 213 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 60 0.08 SIDE CHAIN REMARK 500 5 ARG A 60 0.10 SIDE CHAIN REMARK 500 6 ARG A 60 0.09 SIDE CHAIN REMARK 500 8 ARG A 60 0.08 SIDE CHAIN REMARK 500 9 ARG A 60 0.11 SIDE CHAIN REMARK 500 9 ARG A 122 0.10 SIDE CHAIN REMARK 500 11 ARG A 60 0.07 SIDE CHAIN REMARK 500 11 ARG A 122 0.08 SIDE CHAIN REMARK 500 13 ARG A 33 0.09 SIDE CHAIN REMARK 500 14 ARG A 64 0.08 SIDE CHAIN REMARK 500 15 ARG A 57 0.09 SIDE CHAIN REMARK 500 17 ARG A 60 0.08 SIDE CHAIN REMARK 500 17 ARG A 122 0.07 SIDE CHAIN REMARK 500 20 ARG A 122 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19459 RELATED DB: BMRB REMARK 900 RELATED ID: 2MCY RELATED DB: PDB DBREF 2MCZ A 0 122 UNP P17927 CR1_HUMAN 41 163 SEQADV 2MCZ GLU A -5 UNP P17927 EXPRESSION TAG SEQADV 2MCZ ALA A -4 UNP P17927 EXPRESSION TAG SEQADV 2MCZ GLU A -3 UNP P17927 EXPRESSION TAG SEQADV 2MCZ ALA A -2 UNP P17927 EXPRESSION TAG SEQADV 2MCZ ALA A -1 UNP P17927 EXPRESSION TAG SEQADV 2MCZ GLN A 15 UNP P17927 ASN 56 CONFLICT SEQADV 2MCZ GLN A 115 UNP P17927 ASN 156 CONFLICT SEQRES 1 A 128 GLU ALA GLU ALA ALA GLY GLN CYS ASN ALA PRO GLU TRP SEQRES 2 A 128 LEU PRO PHE ALA ARG PRO THR GLN LEU THR ASP GLU PHE SEQRES 3 A 128 GLU PHE PRO ILE GLY THR TYR LEU ASN TYR GLU CYS ARG SEQRES 4 A 128 PRO GLY TYR SER GLY ARG PRO PHE SER ILE ILE CYS LEU SEQRES 5 A 128 LYS ASN SER VAL TRP THR GLY ALA LYS ASP ARG CYS ARG SEQRES 6 A 128 ARG LYS SER CYS ARG ASN PRO PRO ASP PRO VAL ASN GLY SEQRES 7 A 128 MET VAL HIS VAL ILE LYS GLY ILE GLN PHE GLY SER GLN SEQRES 8 A 128 ILE LYS TYR SER CYS THR LYS GLY TYR ARG LEU ILE GLY SEQRES 9 A 128 SER SER SER ALA THR CYS ILE ILE SER GLY ASP THR VAL SEQRES 10 A 128 ILE TRP ASP GLN GLU THR PRO ILE CYS ASP ARG SHEET 1 A 2 ALA A 11 PRO A 13 0 SHEET 2 A 2 TYR A 30 CYS A 32 -1 SHEET 1 B 3 THR A 26 LEU A 28 0 SHEET 2 B 3 ILE A 43 LYS A 47 -1 SHEET 3 B 3 VAL A 50 TRP A 51 -1 SHEET 1 C 2 MET A 73 VAL A 76 0 SHEET 2 C 2 SER A 84 SER A 89 -1 SHEET 1 D 2 SER A 101 SER A 107 0 SHEET 2 D 2 THR A 110 TRP A 113 -1 SSBOND 1 CYS A 2 CYS A 45 1555 1555 2.03 SSBOND 2 CYS A 32 CYS A 58 1555 1555 2.01 SSBOND 3 CYS A 63 CYS A 104 1555 1555 2.03 SSBOND 4 CYS A 90 CYS A 120 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1