HEADER TRANSFERASE 10-SEP-13 2MDC TITLE SOLUTION STRUCTURE OF THE WW DOMAIN OF HYPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2385- 2430; COMPND 5 SYNONYM: HIF-1, HUNTINGTIN YEAST PARTNER B, HUNTINGTIN-INTERACTING COMPND 6 PROTEIN 1, HIP-1, HUNTINGTIN-INTERACTING PROTEIN B, LYSINE N- COMPND 7 METHYLTRANSFERASE 3A, SET DOMAIN-CONTAINING PROTEIN 2, HSET2, COMPND 8 P231HBP; COMPND 9 EC: 2.1.1.43; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HYPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32M KEYWDS WW DOMAIN, HYPB, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR Y.G.GAO REVDAT 3 15-MAY-24 2MDC 1 REMARK REVDAT 2 14-JUN-23 2MDC 1 REMARK SEQADV REVDAT 1 10-SEP-14 2MDC 0 JRNL AUTH Y.G.GAO,H.YANG,J.ZHAO,Y.J.JIANG,H.Y.HU JRNL TITL AUTOINHIBITORY STRUCTURE OF THE WW DOMAIN OF HYPB/SETD2 JRNL TITL 2 REGULATES ITS INTERACTION WITH THE PROLINE-RICH REGION OF JRNL TITL 3 HUNTINGTIN JRNL REF STRUCTURE V. 22 378 2014 JRNL REFN ISSN 0969-2126 JRNL PMID 24412394 JRNL DOI 10.1016/J.STR.2013.12.005 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MDC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103502. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.08 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 500 MM [U-99% 13C; U-99% 15N] REMARK 210 H2O-1, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNHA; 3D 1H REMARK 210 -15N NOESY; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HCCH-COSY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D HNCO; 3D REMARK 210 C(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, ARIA, TALOS, TOPSPIN, REMARK 210 MOLMOL, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 20 HA VAL A 36 1.12 REMARK 500 HB2 PRO A 12 H SER A 50 1.29 REMARK 500 HB2 PRO A 18 HD3 PRO A 19 1.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 52.98 -91.62 REMARK 500 1 PRO A 19 -67.61 -107.67 REMARK 500 1 ASN A 20 -159.40 -118.42 REMARK 500 1 TRP A 21 -6.54 75.50 REMARK 500 1 PRO A 45 119.97 -29.24 REMARK 500 1 SER A 50 111.17 -167.96 REMARK 500 1 ASP A 53 97.69 172.35 REMARK 500 1 ALA A 55 49.07 -88.22 REMARK 500 2 PRO A 18 161.17 -40.15 REMARK 500 2 PRO A 19 15.53 -61.62 REMARK 500 2 TRP A 21 -10.10 74.89 REMARK 500 2 PRO A 27 -15.35 -46.95 REMARK 500 2 PRO A 46 -79.45 -80.65 REMARK 500 2 GLU A 49 -64.53 -93.83 REMARK 500 2 SER A 50 112.33 55.07 REMARK 500 2 PRO A 51 22.28 -73.83 REMARK 500 2 ASP A 53 87.45 -171.59 REMARK 500 3 PRO A 18 109.97 -46.40 REMARK 500 3 PRO A 19 56.26 -9.21 REMARK 500 3 ASN A 20 -176.52 156.35 REMARK 500 3 PRO A 27 -15.28 -48.54 REMARK 500 3 PRO A 45 105.61 -54.09 REMARK 500 3 THR A 47 -150.63 -122.03 REMARK 500 3 TRP A 48 -15.87 -166.36 REMARK 500 3 SER A 50 114.25 -168.20 REMARK 500 3 ASP A 53 85.02 -175.61 REMARK 500 4 PRO A 18 -121.05 -5.85 REMARK 500 4 ASP A 44 161.98 -48.53 REMARK 500 4 THR A 47 21.96 -166.18 REMARK 500 4 TRP A 48 -45.30 67.19 REMARK 500 4 SER A 50 128.00 -173.43 REMARK 500 4 ASP A 53 105.12 175.36 REMARK 500 4 ASP A 54 -139.80 -155.29 REMARK 500 5 PRO A 18 109.72 -44.34 REMARK 500 5 PRO A 19 53.28 -8.45 REMARK 500 5 ASN A 20 -173.65 160.23 REMARK 500 5 PRO A 27 -15.57 -48.41 REMARK 500 5 PRO A 46 -82.45 -80.25 REMARK 500 5 ASP A 53 91.66 -176.74 REMARK 500 5 ASP A 54 -111.59 -144.33 REMARK 500 6 THR A 14 73.14 35.05 REMARK 500 6 VAL A 16 108.95 -59.24 REMARK 500 6 PRO A 18 -70.26 -18.75 REMARK 500 6 ASN A 20 -160.30 -161.07 REMARK 500 6 PRO A 27 -14.70 -46.49 REMARK 500 6 ASP A 44 131.95 -37.87 REMARK 500 6 TRP A 48 0.66 -67.97 REMARK 500 6 PRO A 51 24.89 -75.05 REMARK 500 6 ASP A 53 72.55 -167.20 REMARK 500 7 THR A 14 70.24 -100.57 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19483 RELATED DB: BMRB REMARK 900 RELATED ID: 2MDI RELATED DB: PDB DBREF 2MDC A 11 56 UNP Q9BYW2 SETD2_HUMAN 2385 2430 SEQADV 2MDC GLY A 9 UNP Q9BYW2 EXPRESSION TAG SEQADV 2MDC SER A 10 UNP Q9BYW2 EXPRESSION TAG SEQRES 1 A 48 GLY SER LYS PRO LYS THR ILE VAL LEU PRO PRO ASN TRP SEQRES 2 A 48 LYS THR ALA ARG ASP PRO GLU GLY LYS ILE TYR TYR TYR SEQRES 3 A 48 HIS VAL ILE THR ARG GLN THR GLN TRP ASP PRO PRO THR SEQRES 4 A 48 TRP GLU SER PRO GLY ASP ASP ALA SER SHEET 1 A 3 THR A 23 ARG A 25 0 SHEET 2 A 3 ILE A 31 HIS A 35 -1 O TYR A 32 N ALA A 24 SHEET 3 A 3 GLN A 40 THR A 41 -1 O GLN A 40 N HIS A 35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1