HEADER HYDROLASE 17-SEP-13 2MDR TITLE SOLUTION STRUCTURE OF THE THIRD DOUBLE-STRANDED RNA-BINDING DOMAIN TITLE 2 (DSRBD3) OF HUMAN ADENOSINE-DEAMINASE ADAR1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 708-801; COMPND 5 SYNONYM: DRADA, 136 KDA DOUBLE-STRANDED RNA-BINDING PROTEIN, P136, COMPND 6 INTERFERON-INDUCIBLE PROTEIN 4, IFI-4, K88DSRBP; COMPND 7 EC: 3.5.4.37; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAR, ADAR1, DSRAD, G1P1, IFI4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS DEAMINASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.BARRAUD,S.BANERJEE,W.I.MOHAMED,M.F.JANTSCH,F.H.ALLAIN REVDAT 4 15-MAY-24 2MDR 1 REMARK REVDAT 3 14-JUN-23 2MDR 1 REMARK SEQADV REVDAT 2 04-JUN-14 2MDR 1 JRNL REVDAT 1 30-APR-14 2MDR 0 JRNL AUTH P.BARRAUD,S.BANERJEE,W.I.MOHAMED,M.F.JANTSCH,F.H.ALLAIN JRNL TITL A BIMODULAR NUCLEAR LOCALIZATION SIGNAL ASSEMBLED VIA AN JRNL TITL 2 EXTENDED DOUBLE-STRANDED RNA-BINDING DOMAIN ACTS AS AN JRNL TITL 3 RNA-SENSING SIGNAL FOR TRANSPORTIN 1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 E1852 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24753571 JRNL DOI 10.1073/PNAS.1323698111 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, CNS 1.21 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MDR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000103514. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7-0.9 MM [U-99% 13C; U-99% REMARK 210 15N] DSRBD3, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.7-0.9 MM [U-99% 13C; U-99% REMARK 210 15N] DSRBD3, 20 MM SODIUM REMARK 210 PHOSPHATE, 100 MM POTASSIUM REMARK 210 CHLORIDE, 1 MM DTT, 100% D2O; REMARK 210 0.7-0.9 MM [U-99% 15N] DSRBD3, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O; 0.7-0.9 MM DSRBD3, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 1 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCA; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HCCH-TOCSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-1H TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 15N{1H}-HETERONOE; REMARK 210 LONG-RANGE 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 700 MHZ; 750 REMARK 210 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, SPARKY, ATNOS, REMARK 210 CYANA, PROCHECKNMR, CING REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 689 REMARK 465 SER A 690 REMARK 465 SER A 691 REMARK 465 HIS A 692 REMARK 465 HIS A 693 REMARK 465 HIS A 694 REMARK 465 HIS A 695 REMARK 465 HIS A 696 REMARK 465 HIS A 697 REMARK 465 SER A 698 REMARK 465 SER A 699 REMARK 465 GLY A 700 REMARK 465 LEU A 701 REMARK 465 VAL A 702 REMARK 465 PRO A 703 REMARK 465 ARG A 704 REMARK 465 GLY A 705 REMARK 465 SER A 706 REMARK 465 HIS A 707 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 748 HG SER A 750 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 714 87.14 -68.24 REMARK 500 1 THR A 725 -81.61 -119.37 REMARK 500 2 THR A 725 -76.79 -111.04 REMARK 500 3 PRO A 710 -163.97 -74.85 REMARK 500 3 THR A 725 -79.69 -92.55 REMARK 500 3 PHE A 769 137.84 -172.86 REMARK 500 4 THR A 725 -67.81 -92.28 REMARK 500 5 PRO A 710 46.64 -75.46 REMARK 500 5 THR A 725 -77.47 -106.29 REMARK 500 5 PHE A 769 138.97 -171.56 REMARK 500 6 THR A 725 -83.44 -93.02 REMARK 500 6 GLU A 755 64.21 -150.39 REMARK 500 6 PRO A 756 92.15 -68.42 REMARK 500 6 PHE A 769 136.86 -170.22 REMARK 500 7 MET A 709 136.95 71.04 REMARK 500 7 PRO A 710 38.29 -83.98 REMARK 500 7 THR A 725 -76.17 -90.23 REMARK 500 7 PHE A 769 136.98 -176.78 REMARK 500 7 GLU A 800 95.58 -65.04 REMARK 500 8 THR A 725 -70.78 -93.12 REMARK 500 9 THR A 725 -83.30 -108.37 REMARK 500 10 THR A 725 -73.48 -118.69 REMARK 500 10 PHE A 769 138.32 -174.76 REMARK 500 11 THR A 725 -73.06 -75.44 REMARK 500 12 THR A 725 -79.82 -84.22 REMARK 500 12 GLU A 755 71.72 -158.89 REMARK 500 12 PHE A 769 141.57 -171.04 REMARK 500 13 ARG A 714 87.10 -65.34 REMARK 500 13 THR A 725 -79.90 -118.04 REMARK 500 14 THR A 725 -78.49 -96.26 REMARK 500 14 GLU A 800 85.19 62.10 REMARK 500 15 PRO A 710 91.97 -63.12 REMARK 500 15 THR A 725 -81.50 -82.16 REMARK 500 15 GLU A 755 73.69 -152.59 REMARK 500 16 MET A 709 83.77 63.58 REMARK 500 16 THR A 725 -72.47 -89.41 REMARK 500 16 GLU A 755 69.43 -153.10 REMARK 500 17 MET A 709 76.73 51.90 REMARK 500 17 THR A 725 -76.64 -89.57 REMARK 500 17 SER A 750 -169.81 -174.75 REMARK 500 17 PHE A 769 139.09 -171.47 REMARK 500 19 ASN A 711 88.63 65.01 REMARK 500 19 THR A 725 -80.87 -103.26 REMARK 500 19 GLU A 755 61.97 -152.93 REMARK 500 19 PHE A 769 136.84 -170.89 REMARK 500 20 PRO A 710 84.82 -60.01 REMARK 500 20 ASN A 711 -34.67 165.83 REMARK 500 20 ARG A 714 95.26 -68.33 REMARK 500 20 THR A 725 -74.64 -93.89 REMARK 500 20 PRO A 756 92.87 -58.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19502 RELATED DB: BMRB DBREF 2MDR A 708 801 UNP P55265 DSRAD_HUMAN 708 801 SEQADV 2MDR GLY A 689 UNP P55265 EXPRESSION TAG SEQADV 2MDR SER A 690 UNP P55265 EXPRESSION TAG SEQADV 2MDR SER A 691 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 692 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 693 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 694 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 695 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 696 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 697 UNP P55265 EXPRESSION TAG SEQADV 2MDR SER A 698 UNP P55265 EXPRESSION TAG SEQADV 2MDR SER A 699 UNP P55265 EXPRESSION TAG SEQADV 2MDR GLY A 700 UNP P55265 EXPRESSION TAG SEQADV 2MDR LEU A 701 UNP P55265 EXPRESSION TAG SEQADV 2MDR VAL A 702 UNP P55265 EXPRESSION TAG SEQADV 2MDR PRO A 703 UNP P55265 EXPRESSION TAG SEQADV 2MDR ARG A 704 UNP P55265 EXPRESSION TAG SEQADV 2MDR GLY A 705 UNP P55265 EXPRESSION TAG SEQADV 2MDR SER A 706 UNP P55265 EXPRESSION TAG SEQADV 2MDR HIS A 707 UNP P55265 EXPRESSION TAG SEQRES 1 A 113 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 113 VAL PRO ARG GLY SER HIS MET MET PRO ASN LYS VAL ARG SEQRES 3 A 113 LYS ILE GLY GLU LEU VAL ARG TYR LEU ASN THR ASN PRO SEQRES 4 A 113 VAL GLY GLY LEU LEU GLU TYR ALA ARG SER HIS GLY PHE SEQRES 5 A 113 ALA ALA GLU PHE LYS LEU VAL ASP GLN SER GLY PRO PRO SEQRES 6 A 113 HIS GLU PRO LYS PHE VAL TYR GLN ALA LYS VAL GLY GLY SEQRES 7 A 113 ARG TRP PHE PRO ALA VAL CYS ALA HIS SER LYS LYS GLN SEQRES 8 A 113 GLY LYS GLN GLU ALA ALA ASP ALA ALA LEU ARG VAL LEU SEQRES 9 A 113 ILE GLY GLU ASN GLU LYS ALA GLU ARG HELIX 1 1 LYS A 715 THR A 725 1 11 HELIX 2 2 ASN A 726 GLY A 739 1 14 HELIX 3 3 SER A 776 GLU A 797 1 22 SHEET 1 A 3 ALA A 742 GLN A 749 0 SHEET 2 A 3 PHE A 758 VAL A 764 -1 O LYS A 763 N GLU A 743 SHEET 3 A 3 ARG A 767 ALA A 774 -1 O PHE A 769 N ALA A 762 CISPEP 1 PHE A 769 PRO A 770 1 -4.07 CISPEP 2 PHE A 769 PRO A 770 2 -3.38 CISPEP 3 PHE A 769 PRO A 770 3 -3.81 CISPEP 4 PHE A 769 PRO A 770 4 -5.35 CISPEP 5 PHE A 769 PRO A 770 5 -4.41 CISPEP 6 PHE A 769 PRO A 770 6 -3.31 CISPEP 7 PHE A 769 PRO A 770 7 -3.28 CISPEP 8 PHE A 769 PRO A 770 8 -4.52 CISPEP 9 PHE A 769 PRO A 770 9 -3.70 CISPEP 10 PHE A 769 PRO A 770 10 -6.11 CISPEP 11 PHE A 769 PRO A 770 11 -4.04 CISPEP 12 PHE A 769 PRO A 770 12 -2.07 CISPEP 13 PHE A 769 PRO A 770 13 -2.81 CISPEP 14 PHE A 769 PRO A 770 14 -3.20 CISPEP 15 PHE A 769 PRO A 770 15 -2.49 CISPEP 16 PHE A 769 PRO A 770 16 -4.12 CISPEP 17 PHE A 769 PRO A 770 17 -4.13 CISPEP 18 PHE A 769 PRO A 770 18 -4.64 CISPEP 19 PHE A 769 PRO A 770 19 -4.48 CISPEP 20 PHE A 769 PRO A 770 20 -5.60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1