data_2MET # _entry.id 2MET # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MET pdb_00002met 10.2210/pdb2met/pdb RCSB RCSB103542 ? ? BMRB 19531 ? ? WWPDB D_1000103542 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19531 BMRB unspecified . 2MEU PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MET _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2013-10-02 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Mineev, K.S.' 1 ? 'Arseniev, A.A.' 2 ? 'Shulepko, M.' 3 ? 'Lyukmanova, E.N.' 4 ? 'Kirpichnikov, M.P.' 5 ? # _citation.id primary _citation.title 'Structural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation' _citation.journal_abbrev Structure _citation.journal_volume 22 _citation.page_first 1077 _citation.page_last 1089 _citation.year 2014 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 1878-4186 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24980797 _citation.pdbx_database_id_DOI 10.1016/j.str.2014.05.010 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Manni, S.' 1 ? primary 'Mineev, K.S.' 2 ? primary 'Usmanova, D.' 3 ? primary 'Lyukmanova, E.N.' 4 ? primary 'Shulepko, M.A.' 5 ? primary 'Kirpichnikov, M.P.' 6 ? primary 'Winter, J.' 7 ? primary 'Matkovic, M.' 8 ? primary 'Deupi, X.' 9 ? primary 'Arseniev, A.S.' 10 ? primary 'Ballmer-Hofer, K.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Vascular endothelial growth factor receptor 2' _entity.formula_weight 4161.049 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec 2.7.10.1 _entity.pdbx_mutation V11E _entity.pdbx_fragment 'UNP residues 759-795' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'VEGFR-2, Fetal liver kinase 1, FLK-1, Kinase insert domain receptor, KDR, Protein-tyrosine kinase receptor flk-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code EKTNLEIIILEGTAVIAMFFWLLLVIILRTVKRANGG _entity_poly.pdbx_seq_one_letter_code_can EKTNLEIIILEGTAVIAMFFWLLLVIILRTVKRANGG _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LYS n 1 3 THR n 1 4 ASN n 1 5 LEU n 1 6 GLU n 1 7 ILE n 1 8 ILE n 1 9 ILE n 1 10 LEU n 1 11 GLU n 1 12 GLY n 1 13 THR n 1 14 ALA n 1 15 VAL n 1 16 ILE n 1 17 ALA n 1 18 MET n 1 19 PHE n 1 20 PHE n 1 21 TRP n 1 22 LEU n 1 23 LEU n 1 24 LEU n 1 25 VAL n 1 26 ILE n 1 27 ILE n 1 28 LEU n 1 29 ARG n 1 30 THR n 1 31 VAL n 1 32 LYS n 1 33 ARG n 1 34 ALA n 1 35 ASN n 1 36 GLY n 1 37 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KDR, FLK1, VEGFR2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET20b(+)' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VGFR2_HUMAN _struct_ref.pdbx_db_accession P35968 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EKTNLEIIILVGTAVIAMFFWLLLVIILRTVKRANGG _struct_ref.pdbx_align_begin 759 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MET A 1 ? 37 ? P35968 759 ? 795 ? 1 37 2 1 2MET B 1 ? 37 ? P35968 759 ? 795 ? 101 137 3 1 2MET C 1 ? 37 ? P35968 759 ? 795 ? 201 237 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MET GLU A 11 ? UNP P35968 VAL 769 'engineered mutation' 11 1 2 2MET GLU B 11 ? UNP P35968 VAL 769 'engineered mutation' 111 2 3 2MET GLU C 11 ? UNP P35968 VAL 769 'engineered mutation' 211 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCA' 1 6 1 '3D HNCO' 1 7 1 '3D 1H-13C NOESY aliphatic' 1 8 1 '3D 1H-13C NOESY aromatic' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '13C,15N - filtered NOESY-HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 4.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.6mM VEGFR-2tm769-1, 0.6mM [U-100% 13C; U-100% 15N] VEGFR-2tm769-2, 120mM [U-100% 2H] DPC-3, 20mM [U-99% 2H] sodium acetate-4, 3mM sodium azide-5, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2MET _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MET _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MET _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 1 3.0 'Keller and Wuthrich' 'chemical shift assignment' CARA 2 1.8.4 'Keller and Wuthrich' 'data analysis' CARA 3 1.8.4 'Bruker Biospin' collection TopSpin 4 3.0 'Orekhov, Mayzel' processing qMDD 5 2.1 ? refinement CYANA 6 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'The TM domain of VEGRF2 bears the V/E substitution at the position 769.' _exptl.entry_id 2MET _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MET _struct.title 'NMR spatial structure of the trimeric mutant TM domain of VEGFR2 receptor.' _struct.pdbx_model_details 'fewest violations, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MET _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text 'VEGFR, receptor tyrosine kinase, homodimer, SIGNALING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? LYS A 32 ? THR A 3 LYS A 32 1 ? 30 HELX_P HELX_P2 2 THR B 3 ? LYS B 32 ? THR B 103 LYS B 132 1 ? 30 HELX_P HELX_P3 3 THR C 3 ? LYS C 32 ? THR C 203 LYS C 232 1 ? 30 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2MET _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLU 11 11 11 GLU GLU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 MET 18 18 18 MET MET A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 TRP 21 21 21 TRP TRP A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 ARG 33 33 33 ARG ARG A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n B 1 1 GLU 1 101 101 GLU GLU B . n B 1 2 LYS 2 102 102 LYS LYS B . n B 1 3 THR 3 103 103 THR THR B . n B 1 4 ASN 4 104 104 ASN ASN B . n B 1 5 LEU 5 105 105 LEU LEU B . n B 1 6 GLU 6 106 106 GLU GLU B . n B 1 7 ILE 7 107 107 ILE ILE B . n B 1 8 ILE 8 108 108 ILE ILE B . n B 1 9 ILE 9 109 109 ILE ILE B . n B 1 10 LEU 10 110 110 LEU LEU B . n B 1 11 GLU 11 111 111 GLU GLU B . n B 1 12 GLY 12 112 112 GLY GLY B . n B 1 13 THR 13 113 113 THR THR B . n B 1 14 ALA 14 114 114 ALA ALA B . n B 1 15 VAL 15 115 115 VAL VAL B . n B 1 16 ILE 16 116 116 ILE ILE B . n B 1 17 ALA 17 117 117 ALA ALA B . n B 1 18 MET 18 118 118 MET MET B . n B 1 19 PHE 19 119 119 PHE PHE B . n B 1 20 PHE 20 120 120 PHE PHE B . n B 1 21 TRP 21 121 121 TRP TRP B . n B 1 22 LEU 22 122 122 LEU LEU B . n B 1 23 LEU 23 123 123 LEU LEU B . n B 1 24 LEU 24 124 124 LEU LEU B . n B 1 25 VAL 25 125 125 VAL VAL B . n B 1 26 ILE 26 126 126 ILE ILE B . n B 1 27 ILE 27 127 127 ILE ILE B . n B 1 28 LEU 28 128 128 LEU LEU B . n B 1 29 ARG 29 129 129 ARG ARG B . n B 1 30 THR 30 130 130 THR THR B . n B 1 31 VAL 31 131 131 VAL VAL B . n B 1 32 LYS 32 132 132 LYS LYS B . n B 1 33 ARG 33 133 133 ARG ARG B . n B 1 34 ALA 34 134 134 ALA ALA B . n B 1 35 ASN 35 135 135 ASN ASN B . n B 1 36 GLY 36 136 136 GLY GLY B . n B 1 37 GLY 37 137 137 GLY GLY B . n C 1 1 GLU 1 201 201 GLU GLU C . n C 1 2 LYS 2 202 202 LYS LYS C . n C 1 3 THR 3 203 203 THR THR C . n C 1 4 ASN 4 204 204 ASN ASN C . n C 1 5 LEU 5 205 205 LEU LEU C . n C 1 6 GLU 6 206 206 GLU GLU C . n C 1 7 ILE 7 207 207 ILE ILE C . n C 1 8 ILE 8 208 208 ILE ILE C . n C 1 9 ILE 9 209 209 ILE ILE C . n C 1 10 LEU 10 210 210 LEU LEU C . n C 1 11 GLU 11 211 211 GLU GLU C . n C 1 12 GLY 12 212 212 GLY GLY C . n C 1 13 THR 13 213 213 THR THR C . n C 1 14 ALA 14 214 214 ALA ALA C . n C 1 15 VAL 15 215 215 VAL VAL C . n C 1 16 ILE 16 216 216 ILE ILE C . n C 1 17 ALA 17 217 217 ALA ALA C . n C 1 18 MET 18 218 218 MET MET C . n C 1 19 PHE 19 219 219 PHE PHE C . n C 1 20 PHE 20 220 220 PHE PHE C . n C 1 21 TRP 21 221 221 TRP TRP C . n C 1 22 LEU 22 222 222 LEU LEU C . n C 1 23 LEU 23 223 223 LEU LEU C . n C 1 24 LEU 24 224 224 LEU LEU C . n C 1 25 VAL 25 225 225 VAL VAL C . n C 1 26 ILE 26 226 226 ILE ILE C . n C 1 27 ILE 27 227 227 ILE ILE C . n C 1 28 LEU 28 228 228 LEU LEU C . n C 1 29 ARG 29 229 229 ARG ARG C . n C 1 30 THR 30 230 230 THR THR C . n C 1 31 VAL 31 231 231 VAL VAL C . n C 1 32 LYS 32 232 232 LYS LYS C . n C 1 33 ARG 33 233 233 ARG ARG C . n C 1 34 ALA 34 234 234 ALA ALA C . n C 1 35 ASN 35 235 235 ASN ASN C . n C 1 36 GLY 36 236 236 GLY GLY C . n C 1 37 GLY 37 237 237 GLY GLY C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-07-30 2 'Structure model' 1 1 2017-09-06 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_nmr_software 6 3 'Structure model' pdbx_nmr_spectrometer 7 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' 13 3 'Structure model' '_database_2.pdbx_DOI' 14 3 'Structure model' '_database_2.pdbx_database_accession' 15 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 16 3 'Structure model' '_pdbx_nmr_software.name' 17 3 'Structure model' '_pdbx_nmr_spectrometer.model' 18 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id VEGFR-2tm769-1 0.6 ? mM ? 1 VEGFR-2tm769-2 0.6 ? mM '[U-100% 13C; U-100% 15N]' 1 DPC-3 120 ? mM '[U-100% 2H]' 1 'sodium acetate-4' 20 ? mM '[U-99% 2H]' 1 'sodium azide-5' 3 ? mM ? 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 33 ? ? -93.99 30.10 2 1 ARG B 133 ? ? -94.24 30.24 3 1 ARG C 233 ? ? -94.13 30.20 4 2 ARG A 33 ? ? -94.01 34.67 5 2 ALA A 34 ? ? -140.04 -5.25 6 2 ARG B 133 ? ? -93.77 34.40 7 2 ARG C 233 ? ? -93.65 34.36 8 3 ARG A 33 ? ? -95.49 35.58 9 3 ARG B 133 ? ? -95.39 35.04 10 3 ARG C 233 ? ? -95.46 35.44 11 3 ALA C 234 ? ? -140.05 -0.72 12 4 ARG A 33 ? ? -97.19 36.80 13 4 ALA A 34 ? ? -143.61 -3.87 14 4 ARG B 133 ? ? -97.11 36.60 15 4 ALA B 134 ? ? -143.53 -4.05 16 4 ARG C 233 ? ? -97.00 36.40 17 4 ALA C 234 ? ? -143.86 -3.68 18 5 ARG A 33 ? ? -98.50 36.29 19 5 ARG B 133 ? ? -97.49 36.04 20 5 ARG C 233 ? ? -96.96 35.53 21 6 ALA A 34 ? ? -140.87 -9.11 22 6 ALA B 134 ? ? -140.66 -9.48 23 6 ALA C 234 ? ? -141.28 -9.30 24 7 ARG A 33 ? ? -97.25 38.25 25 7 ALA A 34 ? ? -142.50 -11.10 26 7 ARG B 133 ? ? -96.66 38.46 27 7 ALA B 134 ? ? -143.14 -11.17 28 7 ARG C 233 ? ? -96.72 38.47 29 7 ALA C 234 ? ? -143.15 -11.12 30 8 ARG A 33 ? ? -97.69 31.18 31 8 ARG B 133 ? ? -97.09 30.80 32 8 ARG C 233 ? ? -97.06 30.72 33 9 ARG A 33 ? ? -95.81 34.19 34 9 ARG B 133 ? ? -95.94 34.49 35 9 ARG C 233 ? ? -96.10 34.70 36 10 ARG A 33 ? ? -97.56 36.05 37 10 ARG B 133 ? ? -98.23 36.17 38 10 ARG C 233 ? ? -97.73 35.82 #