HEADER PROTEIN TRANSPORT 01-OCT-13 2MEX TITLE STRUCTURE OF THE TETRAMERIC BUILDING BLOCK OF THE SALMONELLA TITLE 2 TYPHIMURIUM PRGI TYPE THREE SECRETION SYSTEM NEEDLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PRGI; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; SOURCE 6 GENE: PRGI, STM2873; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BL21 (DE3) KEYWDS SECRETION, NEEDLE, FILAMENT, PROTEIN TRANSPORT EXPDTA SOLID-STATE NMR NUMMDL 15 AUTHOR A.LOQUET,B.HABENSTEIN,V.CHEVELKOV,K.GILLER,S.BECKER,A.LANGE REVDAT 3 01-MAY-24 2MEX 1 REMARK REVDAT 2 15-JAN-14 2MEX 1 EXPDTA JRNL REVDAT 1 25-DEC-13 2MEX 0 JRNL AUTH A.LOQUET,B.HABENSTEIN,V.CHEVELKOV,S.K.VASA,K.GILLER, JRNL AUTH 2 S.BECKER,A.LANGE JRNL TITL ATOMIC STRUCTURE AND HANDEDNESS OF THE BUILDING BLOCK OF A JRNL TITL 2 BIOLOGICAL ASSEMBLY. JRNL REF J.AM.CHEM.SOC. V. 135 19135 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 24328247 JRNL DOI 10.1021/JA411362Q REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2MEX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-13. REMARK 100 THE DEPOSITION ID IS D_1000103545. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 278 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 10 MG [U-100% 13C; U-100% 15N] REMARK 210 PRGI, 10 MG [1;3-13C]GLYCEROL [U- REMARK 210 100% 15N] PRGI, 10 MG [2-13C] REMARK 210 GLYCEROL [U-100% 15N] PRGI, 10 REMARK 210 MG [1-13C]GLUCOSE [U-100% 15N] REMARK 210 PRGI, 10 MG [2-13C]GLUCOSE [U- REMARK 210 100% 15N] PRGI, WET REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 13C-13C (PDSD) REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 640 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 79 91.39 -68.60 REMARK 500 1 VAL D 20 32.28 -99.47 REMARK 500 1 PRO D 38 -76.92 -52.58 REMARK 500 2 PRO C 38 -74.29 -53.21 REMARK 500 2 PRO D 38 -74.26 -62.06 REMARK 500 3 PRO D 38 -72.77 -73.79 REMARK 500 4 PHE A 79 -83.75 -56.65 REMARK 500 4 PHE B 79 -85.49 -62.48 REMARK 500 4 ASP C 21 30.44 -84.12 REMARK 500 4 ASN C 22 -49.22 -145.57 REMARK 500 4 PHE C 79 -83.11 -53.26 REMARK 500 4 PRO D 38 -73.40 -67.97 REMARK 500 4 PHE D 79 -85.82 -59.90 REMARK 500 5 VAL A 20 31.19 -99.03 REMARK 500 5 PHE A 79 -82.50 -66.18 REMARK 500 5 PRO C 38 -72.96 -53.46 REMARK 500 5 PHE C 79 -85.39 -84.56 REMARK 500 5 PRO D 38 -75.01 -67.49 REMARK 500 6 PHE A 79 28.67 -66.95 REMARK 500 6 PRO C 38 -73.06 -59.63 REMARK 500 6 PHE C 79 28.91 -72.00 REMARK 500 6 PRO D 38 -74.83 -63.51 REMARK 500 6 PHE D 79 29.82 -77.80 REMARK 500 7 PRO C 38 -72.59 -46.73 REMARK 500 7 PRO D 38 -74.43 -48.11 REMARK 500 8 VAL B 20 31.34 -97.17 REMARK 500 8 PRO D 38 -73.99 -61.06 REMARK 500 9 PRO A 38 -72.63 -62.48 REMARK 500 9 PRO D 38 -74.54 -69.00 REMARK 500 10 PHE A 79 -84.52 -54.03 REMARK 500 10 PHE B 79 -85.56 -54.15 REMARK 500 10 PRO C 38 -73.83 -59.41 REMARK 500 10 PHE C 79 -85.63 -53.61 REMARK 500 10 PRO D 38 -73.63 -58.47 REMARK 500 10 PHE D 79 -86.45 -58.40 REMARK 500 11 PRO C 38 -72.66 -42.72 REMARK 500 11 PRO D 38 -73.51 -55.09 REMARK 500 12 PHE A 79 -84.54 -55.24 REMARK 500 12 PHE B 79 -84.77 -62.32 REMARK 500 12 PRO C 38 -71.51 -48.67 REMARK 500 12 PHE C 79 -83.01 -52.80 REMARK 500 12 PRO D 38 -77.91 -65.35 REMARK 500 12 PHE D 79 -85.38 -61.54 REMARK 500 13 PRO C 38 -73.50 -40.77 REMARK 500 14 PHE A 79 87.76 -69.41 REMARK 500 14 PRO C 38 -70.99 -54.39 REMARK 500 14 PHE C 79 97.30 -67.78 REMARK 500 14 PRO D 38 -74.64 -57.32 REMARK 500 15 PRO C 38 -72.99 -47.83 REMARK 500 15 PRO D 38 -73.01 -65.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18276 RELATED DB: BMRB REMARK 900 RELATED ID: 2LPZ RELATED DB: PDB DBREF 2MEX A 1 80 UNP P41784 PRGI_SALTY 1 80 DBREF 2MEX B 1 80 UNP P41784 PRGI_SALTY 1 80 DBREF 2MEX C 1 80 UNP P41784 PRGI_SALTY 1 80 DBREF 2MEX D 1 80 UNP P41784 PRGI_SALTY 1 80 SEQRES 1 A 80 MET ALA THR PRO TRP SER GLY TYR LEU ASP ASP VAL SER SEQRES 2 A 80 ALA LYS PHE ASP THR GLY VAL ASP ASN LEU GLN THR GLN SEQRES 3 A 80 VAL THR GLU ALA LEU ASP LYS LEU ALA ALA LYS PRO SER SEQRES 4 A 80 ASP PRO ALA LEU LEU ALA ALA TYR GLN SER LYS LEU SER SEQRES 5 A 80 GLU TYR ASN LEU TYR ARG ASN ALA GLN SER ASN THR VAL SEQRES 6 A 80 LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE ILE GLN ASN SEQRES 7 A 80 PHE ARG SEQRES 1 B 80 MET ALA THR PRO TRP SER GLY TYR LEU ASP ASP VAL SER SEQRES 2 B 80 ALA LYS PHE ASP THR GLY VAL ASP ASN LEU GLN THR GLN SEQRES 3 B 80 VAL THR GLU ALA LEU ASP LYS LEU ALA ALA LYS PRO SER SEQRES 4 B 80 ASP PRO ALA LEU LEU ALA ALA TYR GLN SER LYS LEU SER SEQRES 5 B 80 GLU TYR ASN LEU TYR ARG ASN ALA GLN SER ASN THR VAL SEQRES 6 B 80 LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE ILE GLN ASN SEQRES 7 B 80 PHE ARG SEQRES 1 C 80 MET ALA THR PRO TRP SER GLY TYR LEU ASP ASP VAL SER SEQRES 2 C 80 ALA LYS PHE ASP THR GLY VAL ASP ASN LEU GLN THR GLN SEQRES 3 C 80 VAL THR GLU ALA LEU ASP LYS LEU ALA ALA LYS PRO SER SEQRES 4 C 80 ASP PRO ALA LEU LEU ALA ALA TYR GLN SER LYS LEU SER SEQRES 5 C 80 GLU TYR ASN LEU TYR ARG ASN ALA GLN SER ASN THR VAL SEQRES 6 C 80 LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE ILE GLN ASN SEQRES 7 C 80 PHE ARG SEQRES 1 D 80 MET ALA THR PRO TRP SER GLY TYR LEU ASP ASP VAL SER SEQRES 2 D 80 ALA LYS PHE ASP THR GLY VAL ASP ASN LEU GLN THR GLN SEQRES 3 D 80 VAL THR GLU ALA LEU ASP LYS LEU ALA ALA LYS PRO SER SEQRES 4 D 80 ASP PRO ALA LEU LEU ALA ALA TYR GLN SER LYS LEU SER SEQRES 5 D 80 GLU TYR ASN LEU TYR ARG ASN ALA GLN SER ASN THR VAL SEQRES 6 D 80 LYS VAL PHE LYS ASP ILE ASP ALA ALA ILE ILE GLN ASN SEQRES 7 D 80 PHE ARG HELIX 1 1 GLY A 7 VAL A 20 1 14 HELIX 2 2 ASN A 22 ALA A 36 1 15 HELIX 3 3 ASP A 40 PHE A 79 1 40 HELIX 4 4 GLY B 7 VAL B 20 1 14 HELIX 5 5 ASN B 22 ALA B 36 1 15 HELIX 6 6 ASP B 40 PHE B 79 1 40 HELIX 7 7 GLY C 7 VAL C 20 1 14 HELIX 8 8 ASN C 22 ALA C 36 1 15 HELIX 9 9 ASP C 40 PHE C 79 1 40 HELIX 10 10 GLY D 7 VAL D 20 1 14 HELIX 11 11 ASN D 22 ALA D 36 1 15 HELIX 12 12 ASP D 40 PHE D 79 1 40 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1