data_2MF8 # _entry.id 2MF8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2MF8 pdb_00002mf8 10.2210/pdb2mf8/pdb RCSB RCSB103556 ? ? BMRB 19540 ? 10.13018/BMR19540 WWPDB D_1000103556 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-11-06 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' Other 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_spectrometer 4 3 'Structure model' pdbx_struct_conn_angle 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq_dif 7 3 'Structure model' struct_site 8 4 'Structure model' chem_comp_atom 9 4 'Structure model' chem_comp_bond 10 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_spectrometer.model' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 24 3 'Structure model' '_struct_ref_seq_dif.details' 25 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 26 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 27 3 'Structure model' '_struct_site.pdbx_auth_seq_id' 28 4 'Structure model' '_database_2.pdbx_DOI' # _database_PDB_caveat.id 1 _database_PDB_caveat.text ;SEVERAL C-N OR O3'-P BONDS LIE OUTSIDE OF THE ACCEPTED RANGE. MANY VALUES OF COVALENT BOND LENGTH AND ANGLE DEVIATE SIGNIFICANTLY FROM STANDARD VALUES. ; # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2MF8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-10-08 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19540 BMRB unspecified . 2JYD PDB unspecified 'HADDOCK STARTING STRUCTURE' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gamsjaeger, R.' 1 ;O'Connell, M.R. ; 2 'Cubeddu, L.' 3 'Shepherd, N.E.' 4 'Lowry, J.A.' 5 'Kwan, A.H.' 6 'Vandevenne, M.' 7 'Swanton, M.K.' 8 'Matthews, J.M.' 9 'Mackay, J.P.' 10 # _citation.id primary _citation.title 'A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 288 _citation.page_first 35180 _citation.page_last 35191 _citation.year 2013 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24097990 _citation.pdbx_database_id_DOI 10.1074/jbc.M113.482075 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gamsjaeger, R.' 1 ? primary ;O'Connell, M.R. ; 2 ? primary 'Cubeddu, L.' 3 ? primary 'Shepherd, N.E.' 4 ? primary 'Lowry, J.A.' 5 ? primary 'Kwan, A.H.' 6 ? primary 'Vandevenne, M.' 7 ? primary 'Swanton, M.K.' 8 ? primary 'Matthews, J.M.' 9 ? primary 'Mackay, J.P.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Myelin transcription factor 1' 9579.887 1 ? ? 'UNP residues 792-880' ? 2 polymer syn ;DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3') ; 3944.601 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3') ; 3997.607 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'MyT1, Neural zinc finger factor 2, NZF-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV ; ;GPLGSFDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSL SGCPRAKKSGLRV ; A ? 2 polydeoxyribonucleotide no no '(DA)(DC)(DC)(DG)(DA)(DA)(DA)(DG)(DT)(DT)(DC)(DA)(DC)' ACCGAAAGTTCAC B ? 3 polydeoxyribonucleotide no no '(DG)(DT)(DG)(DA)(DA)(DC)(DT)(DT)(DT)(DC)(DG)(DG)(DT)' GTGAACTTTCGGT C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 PHE n 1 7 ASP n 1 8 ILE n 1 9 LYS n 1 10 LYS n 1 11 GLU n 1 12 LEU n 1 13 LEU n 1 14 THR n 1 15 CYS n 1 16 PRO n 1 17 THR n 1 18 PRO n 1 19 GLY n 1 20 CYS n 1 21 ASP n 1 22 GLY n 1 23 SER n 1 24 GLY n 1 25 HIS n 1 26 ILE n 1 27 THR n 1 28 GLY n 1 29 ASN n 1 30 TYR n 1 31 ALA n 1 32 SER n 1 33 HIS n 1 34 ARG n 1 35 SER n 1 36 LEU n 1 37 SER n 1 38 GLY n 1 39 CYS n 1 40 PRO n 1 41 LEU n 1 42 ALA n 1 43 ASP n 1 44 LYS n 1 45 SER n 1 46 LEU n 1 47 ARG n 1 48 ASN n 1 49 LEU n 1 50 MET n 1 51 ALA n 1 52 ALA n 1 53 HIS n 1 54 SER n 1 55 ALA n 1 56 ASP n 1 57 LEU n 1 58 LYS n 1 59 CYS n 1 60 PRO n 1 61 THR n 1 62 PRO n 1 63 GLY n 1 64 CYS n 1 65 ASP n 1 66 GLY n 1 67 SER n 1 68 GLY n 1 69 HIS n 1 70 ILE n 1 71 THR n 1 72 GLY n 1 73 ASN n 1 74 TYR n 1 75 ALA n 1 76 SER n 1 77 HIS n 1 78 ARG n 1 79 SER n 1 80 LEU n 1 81 SER n 1 82 GLY n 1 83 CYS n 1 84 PRO n 1 85 ARG n 1 86 ALA n 1 87 LYS n 1 88 LYS n 1 89 SER n 1 90 GLY n 1 91 LEU n 1 92 ARG n 1 93 VAL n 2 1 DA n 2 2 DC n 2 3 DC n 2 4 DG n 2 5 DA n 2 6 DA n 2 7 DA n 2 8 DG n 2 9 DT n 2 10 DT n 2 11 DC n 2 12 DA n 2 13 DC n 3 1 DG n 3 2 DT n 3 3 DG n 3 4 DA n 3 5 DA n 3 6 DC n 3 7 DT n 3 8 DT n 3 9 DT n 3 10 DC n 3 11 DG n 3 12 DG n 3 13 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Myt1, Kiaa0835, Nzf2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 788 ? ? ? A . n A 1 2 PRO 2 789 ? ? ? A . n A 1 3 LEU 3 790 ? ? ? A . n A 1 4 GLY 4 791 ? ? ? A . n A 1 5 SER 5 792 ? ? ? A . n A 1 6 PHE 6 793 ? ? ? A . n A 1 7 ASP 7 794 ? ? ? A . n A 1 8 ILE 8 795 ? ? ? A . n A 1 9 LYS 9 796 ? ? ? A . n A 1 10 LYS 10 797 ? ? ? A . n A 1 11 GLU 11 798 ? ? ? A . n A 1 12 LEU 12 799 799 LEU LEU A . n A 1 13 LEU 13 800 800 LEU LEU A . n A 1 14 THR 14 801 801 THR THR A . n A 1 15 CYS 15 802 802 CYS CYS A . n A 1 16 PRO 16 803 803 PRO PRO A . n A 1 17 THR 17 804 804 THR THR A . n A 1 18 PRO 18 805 805 PRO PRO A . n A 1 19 GLY 19 806 806 GLY GLY A . n A 1 20 CYS 20 807 807 CYS CYS A . n A 1 21 ASP 21 808 808 ASP ASP A . n A 1 22 GLY 22 809 809 GLY GLY A . n A 1 23 SER 23 810 810 SER SER A . n A 1 24 GLY 24 811 811 GLY GLY A . n A 1 25 HIS 25 812 812 HIS HIS A . n A 1 26 ILE 26 813 813 ILE ILE A . n A 1 27 THR 27 814 814 THR THR A . n A 1 28 GLY 28 815 815 GLY GLY A . n A 1 29 ASN 29 816 816 ASN ASN A . n A 1 30 TYR 30 817 817 TYR TYR A . n A 1 31 ALA 31 818 818 ALA ALA A . n A 1 32 SER 32 819 819 SER SER A . n A 1 33 HIS 33 820 820 HIS HIS A . n A 1 34 ARG 34 821 821 ARG ARG A . n A 1 35 SER 35 822 822 SER SER A . n A 1 36 LEU 36 823 823 LEU LEU A . n A 1 37 SER 37 824 824 SER SER A . n A 1 38 GLY 38 825 825 GLY GLY A . n A 1 39 CYS 39 826 826 CYS CYS A . n A 1 40 PRO 40 827 827 PRO PRO A . n A 1 41 LEU 41 828 828 LEU LEU A . n A 1 42 ALA 42 829 829 ALA ALA A . n A 1 43 ASP 43 830 830 ASP ASP A . n A 1 44 LYS 44 831 831 LYS LYS A . n A 1 45 SER 45 832 832 SER SER A . n A 1 46 LEU 46 833 833 LEU LEU A . n A 1 47 ARG 47 834 834 ARG ARG A . n A 1 48 ASN 48 835 835 ASN ASN A . n A 1 49 LEU 49 836 836 LEU LEU A . n A 1 50 MET 50 837 837 MET MET A . n A 1 51 ALA 51 838 838 ALA ALA A . n A 1 52 ALA 52 839 839 ALA ALA A . n A 1 53 HIS 53 840 840 HIS HIS A . n A 1 54 SER 54 841 841 SER SER A . n A 1 55 ALA 55 842 842 ALA ALA A . n A 1 56 ASP 56 843 843 ASP ASP A . n A 1 57 LEU 57 844 844 LEU LEU A . n A 1 58 LYS 58 845 845 LYS LYS A . n A 1 59 CYS 59 846 846 CYS CYS A . n A 1 60 PRO 60 847 847 PRO PRO A . n A 1 61 THR 61 848 848 THR THR A . n A 1 62 PRO 62 849 849 PRO PRO A . n A 1 63 GLY 63 850 850 GLY GLY A . n A 1 64 CYS 64 851 851 CYS CYS A . n A 1 65 ASP 65 852 852 ASP ASP A . n A 1 66 GLY 66 853 853 GLY GLY A . n A 1 67 SER 67 854 854 SER SER A . n A 1 68 GLY 68 855 855 GLY GLY A . n A 1 69 HIS 69 856 856 HIS HIS A . n A 1 70 ILE 70 857 857 ILE ILE A . n A 1 71 THR 71 858 858 THR THR A . n A 1 72 GLY 72 859 859 GLY GLY A . n A 1 73 ASN 73 860 860 ASN ASN A . n A 1 74 TYR 74 861 861 TYR TYR A . n A 1 75 ALA 75 862 862 ALA ALA A . n A 1 76 SER 76 863 863 SER SER A . n A 1 77 HIS 77 864 864 HIS HIS A . n A 1 78 ARG 78 865 865 ARG ARG A . n A 1 79 SER 79 866 866 SER SER A . n A 1 80 LEU 80 867 867 LEU LEU A . n A 1 81 SER 81 868 868 SER SER A . n A 1 82 GLY 82 869 869 GLY GLY A . n A 1 83 CYS 83 870 870 CYS CYS A . n A 1 84 PRO 84 871 871 PRO PRO A . n A 1 85 ARG 85 872 872 ARG ARG A . n A 1 86 ALA 86 873 873 ALA ALA A . n A 1 87 LYS 87 874 ? ? ? A . n A 1 88 LYS 88 875 ? ? ? A . n A 1 89 SER 89 876 ? ? ? A . n A 1 90 GLY 90 877 ? ? ? A . n A 1 91 LEU 91 878 ? ? ? A . n A 1 92 ARG 92 879 ? ? ? A . n A 1 93 VAL 93 880 ? ? ? A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DA 5 5 5 DA DA B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DC 11 11 11 DC DC B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DC 13 13 13 DC DC B . n C 3 1 DG 1 14 14 DG DG C . n C 3 2 DT 2 15 15 DT DT C . n C 3 3 DG 3 16 16 DG DG C . n C 3 4 DA 4 17 17 DA DA C . n C 3 5 DA 5 18 18 DA DA C . n C 3 6 DC 6 19 19 DC DC C . n C 3 7 DT 7 20 20 DT DT C . n C 3 8 DT 8 21 21 DT DT C . n C 3 9 DT 9 22 22 DT DT C . n C 3 10 DC 10 23 23 DC DC C . n C 3 11 DG 11 24 24 DG DG C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DT 13 26 26 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 901 901 ZN ZN A . E 4 ZN 1 902 902 ZN ZN A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2MF8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2MF8 _struct.title 'HADDOCK model of MyT1 F4F5 - DNA complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2MF8 _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN/DNA' _struct_keywords.text 'MyT1, zinc finger, METAL BINDING PROTEIN-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MYT1_MOUSE Q8CFC2 1 ;SKDIKKELLTCPTPGCDGSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCP RAKKSGLKV ; 792 ? 2 PDB 2MF8 2MF8 2 ? ? ? 3 PDB 2MF8 2MF8 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2MF8 A 5 ? 93 ? Q8CFC2 792 ? 880 ? 792 880 2 2 2MF8 B 1 ? 13 ? 2MF8 1 ? 13 ? 1 13 3 3 2MF8 C 1 ? 13 ? 2MF8 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2MF8 GLY A 1 ? UNP Q8CFC2 ? ? 'expression tag' 788 1 1 2MF8 PRO A 2 ? UNP Q8CFC2 ? ? 'expression tag' 789 2 1 2MF8 LEU A 3 ? UNP Q8CFC2 ? ? 'expression tag' 790 3 1 2MF8 GLY A 4 ? UNP Q8CFC2 ? ? 'expression tag' 791 4 1 2MF8 PHE A 6 ? UNP Q8CFC2 LYS 793 conflict 793 5 1 2MF8 ARG A 92 ? UNP Q8CFC2 LYS 879 conflict 879 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 15 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 802 A ZN 901 1_555 ? ? ? ? ? ? ? 2.548 ? ? metalc2 metalc ? ? A CYS 20 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 807 A ZN 901 1_555 ? ? ? ? ? ? ? 1.944 ? ? metalc3 metalc ? ? A HIS 33 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 820 A ZN 901 1_555 ? ? ? ? ? ? ? 2.220 ? ? metalc4 metalc ? ? A CYS 39 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 826 A ZN 901 1_555 ? ? ? ? ? ? ? 1.907 ? ? metalc5 metalc ? ? A CYS 59 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 846 A ZN 902 1_555 ? ? ? ? ? ? ? 1.956 ? ? metalc6 metalc ? ? A CYS 64 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 851 A ZN 902 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc7 metalc ? ? A HIS 77 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 864 A ZN 902 1_555 ? ? ? ? ? ? ? 2.639 ? ? metalc8 metalc ? ? A CYS 83 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 870 A ZN 902 1_555 ? ? ? ? ? ? ? 1.976 ? ? hydrog1 hydrog ? ? B DA 1 N1 ? ? ? 1_555 C DT 13 N3 ? ? B DA 1 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DA 1 N6 ? ? ? 1_555 C DT 13 O4 ? ? B DA 1 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 4 C DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 5 C DT 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 6 C DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 7 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 7 C DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 6 N3 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 6 O2 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 6 N4 ? ? B DG 8 C DC 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 10 C DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 11 N3 ? ? ? 1_555 C DG 3 N1 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 11 N4 ? ? ? 1_555 C DG 3 O6 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 11 O2 ? ? ? 1_555 C DG 3 N2 ? ? B DC 11 C DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 12 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 12 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 13 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DC 13 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 13 C DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 20 ? A CYS 807 ? 1_555 103.2 ? 2 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 80.9 ? 3 SG ? A CYS 20 ? A CYS 807 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 88.6 ? 4 SG ? A CYS 15 ? A CYS 802 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 109.8 ? 5 SG ? A CYS 20 ? A CYS 807 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 146.2 ? 6 NE2 ? A HIS 33 ? A HIS 820 ? 1_555 ZN ? D ZN . ? A ZN 901 ? 1_555 SG ? A CYS 39 ? A CYS 826 ? 1_555 89.7 ? 7 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 64 ? A CYS 851 ? 1_555 88.9 ? 8 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 58.4 ? 9 SG ? A CYS 64 ? A CYS 851 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 66.8 ? 10 SG ? A CYS 59 ? A CYS 846 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 107.1 ? 11 SG ? A CYS 64 ? A CYS 851 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 93.5 ? 12 NE2 ? A HIS 77 ? A HIS 864 ? 1_555 ZN ? E ZN . ? A ZN 902 ? 1_555 SG ? A CYS 83 ? A CYS 870 ? 1_555 56.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 901 ? 5 'BINDING SITE FOR RESIDUE ZN A 901' AC2 Software A ZN 902 ? 5 'BINDING SITE FOR RESIDUE ZN A 902' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 15 ? CYS A 802 . ? 1_555 ? 2 AC1 5 THR A 17 ? THR A 804 . ? 1_555 ? 3 AC1 5 CYS A 20 ? CYS A 807 . ? 1_555 ? 4 AC1 5 HIS A 33 ? HIS A 820 . ? 1_555 ? 5 AC1 5 CYS A 39 ? CYS A 826 . ? 1_555 ? 6 AC2 5 CYS A 59 ? CYS A 846 . ? 1_555 ? 7 AC2 5 THR A 61 ? THR A 848 . ? 1_555 ? 8 AC2 5 CYS A 64 ? CYS A 851 . ? 1_555 ? 9 AC2 5 HIS A 77 ? HIS A 864 . ? 1_555 ? 10 AC2 5 CYS A 83 ? CYS A 870 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HE A ARG 821 ? ? H61 B DA 7 ? ? 1.16 2 1 "H1'" B DG 8 ? ? "H5'" B DT 9 ? ? 1.25 3 1 HE A ARG 865 ? ? H61 C DA 18 ? ? 1.29 4 1 "H2''" C DG 16 ? ? OP2 C DA 17 ? ? 1.55 5 1 "H2''" B DG 8 ? ? OP2 B DT 9 ? ? 1.58 6 1 HB3 A CYS 851 ? ? ZN A ZN 902 ? ? 1.58 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A LEU 828 ? ? CD1 A LEU 828 ? ? 1.933 1.514 0.419 0.037 N 2 1 CG A LEU 828 ? ? CD2 A LEU 828 ? ? 1.852 1.514 0.338 0.037 N 3 1 CA A ALA 829 ? ? CB A ALA 829 ? ? 1.682 1.520 0.162 0.021 N 4 1 CA A LYS 831 ? ? CB A LYS 831 ? ? 1.674 1.535 0.139 0.022 N 5 1 CB A LYS 831 ? ? CG A LYS 831 ? ? 1.759 1.521 0.238 0.027 N 6 1 CD A LYS 831 ? ? CE A LYS 831 ? ? 1.861 1.508 0.353 0.025 N 7 1 CA A SER 832 ? ? CB A SER 832 ? ? 1.617 1.525 0.092 0.015 N 8 1 CG A LEU 833 ? ? CD1 A LEU 833 ? ? 1.832 1.514 0.318 0.037 N 9 1 C A LEU 833 ? ? O A LEU 833 ? ? 1.399 1.229 0.170 0.019 N 10 1 CB A ARG 834 ? ? CG A ARG 834 ? ? 1.860 1.521 0.339 0.027 N 11 1 NE A ARG 834 ? ? CZ A ARG 834 ? ? 1.246 1.326 -0.080 0.013 N 12 1 C A ASN 835 ? ? O A ASN 835 ? ? 1.080 1.229 -0.149 0.019 N 13 1 CG A LEU 836 ? ? CD2 A LEU 836 ? ? 1.827 1.514 0.313 0.037 N 14 1 C A LEU 836 ? ? O A LEU 836 ? ? 1.358 1.229 0.129 0.019 N 15 1 C A LEU 836 ? ? N A MET 837 ? ? 1.082 1.336 -0.254 0.023 Y 16 1 CA A ALA 838 ? ? CB A ALA 838 ? ? 1.684 1.520 0.164 0.021 N 17 1 CA A ALA 839 ? ? CB A ALA 839 ? ? 1.691 1.520 0.171 0.021 N 18 1 C A ALA 839 ? ? N A HIS 840 ? ? 1.163 1.336 -0.173 0.023 Y 19 1 CA A SER 841 ? ? CB A SER 841 ? ? 1.707 1.525 0.182 0.015 N 20 1 C A ALA 842 ? ? O A ALA 842 ? ? 1.425 1.229 0.196 0.019 N 21 1 C A ALA 842 ? ? N A ASP 843 ? ? 1.035 1.336 -0.301 0.023 Y 22 1 CA A LEU 844 ? ? CB A LEU 844 ? ? 1.708 1.533 0.175 0.023 N 23 1 C A LEU 844 ? ? N A LYS 845 ? ? 0.984 1.336 -0.352 0.023 Y 24 1 CB A ARG 872 ? ? CG A ARG 872 ? ? 1.814 1.521 0.293 0.027 N 25 1 CG A ARG 872 ? ? CD A ARG 872 ? ? 1.693 1.515 0.178 0.025 N 26 1 CD A ARG 872 ? ? NE A ARG 872 ? ? 1.299 1.460 -0.161 0.017 N 27 1 NE A ARG 872 ? ? CZ A ARG 872 ? ? 1.220 1.326 -0.106 0.013 N 28 1 C A ARG 872 ? ? O A ARG 872 ? ? 1.053 1.229 -0.176 0.019 N 29 1 CA A ALA 873 ? ? CB A ALA 873 ? ? 1.686 1.520 0.166 0.021 N 30 1 C A ALA 873 ? ? O A ALA 873 ? ? 1.091 1.229 -0.138 0.019 N 31 1 "O3'" B DA 1 ? ? P B DC 2 ? ? 1.273 1.607 -0.334 0.012 Y 32 1 "O3'" B DC 2 ? ? P B DC 3 ? ? 1.458 1.607 -0.149 0.012 Y 33 1 "O3'" B DC 3 ? ? P B DG 4 ? ? 1.453 1.607 -0.154 0.012 Y 34 1 "O3'" B DG 4 ? ? P B DA 5 ? ? 1.514 1.607 -0.093 0.012 Y 35 1 "O3'" B DC 11 ? ? P B DA 12 ? ? 1.504 1.607 -0.103 0.012 Y 36 1 "O3'" B DA 12 ? ? P B DC 13 ? ? 1.271 1.607 -0.336 0.012 Y 37 1 "O3'" C DG 14 ? ? P C DT 15 ? ? 1.468 1.607 -0.139 0.012 Y 38 1 "O3'" C DT 15 ? ? P C DG 16 ? ? 1.265 1.607 -0.342 0.012 Y 39 1 "O3'" C DT 21 ? ? "C3'" C DT 21 ? ? 1.360 1.419 -0.059 0.006 N 40 1 "O3'" C DT 22 ? ? P C DC 23 ? ? 1.273 1.607 -0.334 0.012 Y 41 1 "O3'" C DC 23 ? ? P C DG 24 ? ? 1.454 1.607 -0.153 0.012 Y 42 1 "O3'" C DG 24 ? ? P C DG 25 ? ? 1.466 1.607 -0.141 0.012 Y 43 1 "O3'" C DG 25 ? ? P C DT 26 ? ? 1.469 1.607 -0.138 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 836 ? ? C A LEU 836 ? ? O A LEU 836 ? ? 107.37 120.10 -12.73 2.10 N 2 1 CA A ALA 842 ? ? C A ALA 842 ? ? O A ALA 842 ? ? 101.98 120.10 -18.12 2.10 N 3 1 "C3'" B DA 1 ? ? "O3'" B DA 1 ? ? P B DC 2 ? ? 98.73 119.70 -20.97 1.20 Y 4 1 "O3'" B DA 1 ? ? P B DC 2 ? ? OP2 B DC 2 ? ? 140.04 110.50 29.54 1.10 Y 5 1 "O3'" B DA 1 ? ? P B DC 2 ? ? OP1 B DC 2 ? ? 65.50 105.20 -39.70 2.20 Y 6 1 "C3'" B DC 2 ? ? "O3'" B DC 2 ? ? P B DC 3 ? ? 100.74 119.70 -18.96 1.20 Y 7 1 "O3'" B DC 2 ? ? P B DC 3 ? ? OP2 B DC 3 ? ? 134.91 110.50 24.41 1.10 Y 8 1 "O3'" B DC 2 ? ? P B DC 3 ? ? OP1 B DC 3 ? ? 65.92 105.20 -39.28 2.20 Y 9 1 "C3'" B DC 3 ? ? "O3'" B DC 3 ? ? P B DG 4 ? ? 101.53 119.70 -18.17 1.20 Y 10 1 "O3'" B DC 3 ? ? P B DG 4 ? ? OP2 B DG 4 ? ? 134.42 110.50 23.92 1.10 Y 11 1 "O3'" B DC 3 ? ? P B DG 4 ? ? OP1 B DG 4 ? ? 66.46 105.20 -38.74 2.20 Y 12 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? ? P B DA 5 ? ? 109.39 119.70 -10.31 1.20 Y 13 1 "O3'" B DG 4 ? ? P B DA 5 ? ? OP2 B DA 5 ? ? 125.75 110.50 15.25 1.10 Y 14 1 "O3'" B DG 4 ? ? P B DA 5 ? ? OP1 B DA 5 ? ? 77.77 105.20 -27.43 2.20 Y 15 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.21 108.30 1.91 0.30 N 16 1 "O3'" B DT 10 ? ? P B DC 11 ? ? OP2 B DC 11 ? ? 124.19 110.50 13.69 1.10 Y 17 1 "O3'" B DT 10 ? ? P B DC 11 ? ? OP1 B DC 11 ? ? 84.39 105.20 -20.81 2.20 Y 18 1 "C3'" B DC 11 ? ? "O3'" B DC 11 ? ? P B DA 12 ? ? 110.31 119.70 -9.39 1.20 Y 19 1 "O3'" B DC 11 ? ? P B DA 12 ? ? OP2 B DA 12 ? ? 124.87 110.50 14.37 1.10 Y 20 1 "O3'" B DC 11 ? ? P B DA 12 ? ? OP1 B DA 12 ? ? 78.00 105.20 -27.20 2.20 Y 21 1 "C3'" B DA 12 ? ? "O3'" B DA 12 ? ? P B DC 13 ? ? 98.86 119.70 -20.84 1.20 Y 22 1 "O3'" B DA 12 ? ? P B DC 13 ? ? OP2 B DC 13 ? ? 139.92 110.50 29.42 1.10 Y 23 1 "O3'" B DA 12 ? ? P B DC 13 ? ? OP1 B DC 13 ? ? 65.46 105.20 -39.74 2.20 Y 24 1 "C3'" C DG 14 ? ? "O3'" C DG 14 ? ? P C DT 15 ? ? 108.66 119.70 -11.04 1.20 Y 25 1 "O3'" C DG 14 ? ? P C DT 15 ? ? OP2 C DT 15 ? ? 125.80 110.50 15.30 1.10 Y 26 1 "O3'" C DG 14 ? ? P C DT 15 ? ? OP1 C DT 15 ? ? 76.30 105.20 -28.90 2.20 Y 27 1 "C3'" C DT 15 ? ? "O3'" C DT 15 ? ? P C DG 16 ? ? 101.09 119.70 -18.61 1.20 Y 28 1 "O3'" C DT 15 ? ? P C DG 16 ? ? OP2 C DG 16 ? ? 138.34 110.50 27.84 1.10 Y 29 1 "O3'" C DT 15 ? ? P C DG 16 ? ? OP1 C DG 16 ? ? 66.19 105.20 -39.01 2.20 Y 30 1 "O3'" C DT 21 ? ? P C DT 22 ? ? OP2 C DT 22 ? ? 121.59 110.50 11.09 1.10 Y 31 1 "O3'" C DT 21 ? ? P C DT 22 ? ? OP1 C DT 22 ? ? 86.54 105.20 -18.66 2.20 Y 32 1 "C3'" C DT 22 ? ? "O3'" C DT 22 ? ? P C DC 23 ? ? 100.02 119.70 -19.68 1.20 Y 33 1 "O3'" C DT 22 ? ? P C DC 23 ? ? OP2 C DC 23 ? ? 139.03 110.50 28.53 1.10 Y 34 1 "O3'" C DT 22 ? ? P C DC 23 ? ? OP1 C DC 23 ? ? 65.47 105.20 -39.73 2.20 Y 35 1 "C3'" C DC 23 ? ? "O3'" C DC 23 ? ? P C DG 24 ? ? 101.55 119.70 -18.15 1.20 Y 36 1 "O3'" C DC 23 ? ? P C DG 24 ? ? OP2 C DG 24 ? ? 134.45 110.50 23.95 1.10 Y 37 1 "O3'" C DC 23 ? ? P C DG 24 ? ? OP1 C DG 24 ? ? 66.59 105.20 -38.61 2.20 Y 38 1 "C3'" C DG 24 ? ? "O3'" C DG 24 ? ? P C DG 25 ? ? 100.95 119.70 -18.75 1.20 Y 39 1 "O3'" C DG 24 ? ? P C DG 25 ? ? OP2 C DG 25 ? ? 135.30 110.50 24.80 1.10 Y 40 1 "O3'" C DG 24 ? ? P C DG 25 ? ? OP1 C DG 25 ? ? 66.38 105.20 -38.82 2.20 Y 41 1 "C3'" C DG 25 ? ? "O3'" C DG 25 ? ? P C DT 26 ? ? 108.66 119.70 -11.04 1.20 Y 42 1 "O3'" C DG 25 ? ? P C DT 26 ? ? OP2 C DT 26 ? ? 125.79 110.50 15.29 1.10 Y 43 1 "O3'" C DG 25 ? ? P C DT 26 ? ? OP1 C DT 26 ? ? 76.20 105.20 -29.00 2.20 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 818 ? ? -141.77 -40.48 2 1 SER A 822 ? ? -142.22 -132.88 3 1 SER A 824 ? ? -104.55 -79.42 4 1 LEU A 828 ? ? -72.51 -76.80 5 1 ASP A 830 ? ? 63.62 -168.53 6 1 LYS A 831 ? ? -143.56 15.44 7 1 SER A 832 ? ? 71.76 99.68 8 1 LEU A 833 ? ? -168.50 90.95 9 1 ARG A 834 ? ? -142.40 -87.14 10 1 ASN A 835 ? ? 45.22 -124.90 11 1 LEU A 836 ? ? -107.71 40.48 12 1 LYS A 845 ? ? -106.83 -162.72 13 1 ALA A 862 ? ? -140.60 -37.03 14 1 SER A 866 ? ? -147.55 -128.06 15 1 LEU A 867 ? ? -90.06 55.30 16 1 SER A 868 ? ? -106.84 -77.05 17 1 PRO A 871 ? ? -82.92 43.02 18 1 ARG A 872 ? ? 176.09 -173.29 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 LEU A 799 ? ? 11.03 2 1 LEU A 828 ? ? 11.26 3 1 ALA A 842 ? ? -17.92 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A LEU 836 ? ? N A MET 837 ? ? 1.08 2 1 C A ALA 839 ? ? N A HIS 840 ? ? 1.16 3 1 C A ALA 842 ? ? N A ASP 843 ? ? 1.03 4 1 C A LEU 844 ? ? N A LYS 845 ? ? 0.98 5 1 "O3'" B DA 1 ? ? P B DC 2 ? ? 1.27 6 1 "O3'" B DA 12 ? ? P B DC 13 ? ? 1.27 7 1 "O3'" C DT 15 ? ? P C DG 16 ? ? 1.26 8 1 "O3'" C DT 22 ? ? P C DC 23 ? ? 1.27 # _pdbx_entry_details.entry_id 2MF8 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details 'FOR DOCKING, THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA.' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 10 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2MF8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2MF8 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '0.2-1.0 mM [U-13C; U-15N] protein, 0.2-1.0 mM DNA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id protein-1 ? 0.2-1.0 mM '[U-13C; U-15N]' 1 DNA-2 ? 0.2-1.0 mM ? 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 60 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-15N HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCO' 1 6 1 '3D HN(CA)CO' 1 7 1 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2MF8 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;THE STARTING STRUCTURE OF THE PROTEIN WAS AN IN SILICO FUSION OF TWO MYT1 F5 ZINC FINGERS FROM PDB ENTRY 2JYD. THE STARTING DNA STRUCTURE WAS CREATED BY PROGRAM 3DNA AS IDEAL B-FORM DNA. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.authors 'Bonvin, A. et al.' _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name HADDOCK _pdbx_nmr_software.version ? _pdbx_nmr_software.ordinal 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 788 ? A GLY 1 2 1 Y 1 A PRO 789 ? A PRO 2 3 1 Y 1 A LEU 790 ? A LEU 3 4 1 Y 1 A GLY 791 ? A GLY 4 5 1 Y 1 A SER 792 ? A SER 5 6 1 Y 1 A PHE 793 ? A PHE 6 7 1 Y 1 A ASP 794 ? A ASP 7 8 1 Y 1 A ILE 795 ? A ILE 8 9 1 Y 1 A LYS 796 ? A LYS 9 10 1 Y 1 A LYS 797 ? A LYS 10 11 1 Y 1 A GLU 798 ? A GLU 11 12 1 Y 1 A LYS 874 ? A LYS 87 13 1 Y 1 A LYS 875 ? A LYS 88 14 1 Y 1 A SER 876 ? A SER 89 15 1 Y 1 A GLY 877 ? A GLY 90 16 1 Y 1 A LEU 878 ? A LEU 91 17 1 Y 1 A ARG 879 ? A ARG 92 18 1 Y 1 A VAL 880 ? A VAL 93 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLU N N N N 231 GLU CA C N S 232 GLU C C N N 233 GLU O O N N 234 GLU CB C N N 235 GLU CG C N N 236 GLU CD C N N 237 GLU OE1 O N N 238 GLU OE2 O N N 239 GLU OXT O N N 240 GLU H H N N 241 GLU H2 H N N 242 GLU HA H N N 243 GLU HB2 H N N 244 GLU HB3 H N N 245 GLU HG2 H N N 246 GLU HG3 H N N 247 GLU HE2 H N N 248 GLU HXT H N N 249 GLY N N N N 250 GLY CA C N N 251 GLY C C N N 252 GLY O O N N 253 GLY OXT O N N 254 GLY H H N N 255 GLY H2 H N N 256 GLY HA2 H N N 257 GLY HA3 H N N 258 GLY HXT H N N 259 HIS N N N N 260 HIS CA C N S 261 HIS C C N N 262 HIS O O N N 263 HIS CB C N N 264 HIS CG C Y N 265 HIS ND1 N Y N 266 HIS CD2 C Y N 267 HIS CE1 C Y N 268 HIS NE2 N Y N 269 HIS OXT O N N 270 HIS H H N N 271 HIS H2 H N N 272 HIS HA H N N 273 HIS HB2 H N N 274 HIS HB3 H N N 275 HIS HD1 H N N 276 HIS HD2 H N N 277 HIS HE1 H N N 278 HIS HE2 H N N 279 HIS HXT H N N 280 ILE N N N N 281 ILE CA C N S 282 ILE C C N N 283 ILE O O N N 284 ILE CB C N S 285 ILE CG1 C N N 286 ILE CG2 C N N 287 ILE CD1 C N N 288 ILE OXT O N N 289 ILE H H N N 290 ILE H2 H N N 291 ILE HA H N N 292 ILE HB H N N 293 ILE HG12 H N N 294 ILE HG13 H N N 295 ILE HG21 H N N 296 ILE HG22 H N N 297 ILE HG23 H N N 298 ILE HD11 H N N 299 ILE HD12 H N N 300 ILE HD13 H N N 301 ILE HXT H N N 302 LEU N N N N 303 LEU CA C N S 304 LEU C C N N 305 LEU O O N N 306 LEU CB C N N 307 LEU CG C N N 308 LEU CD1 C N N 309 LEU CD2 C N N 310 LEU OXT O N N 311 LEU H H N N 312 LEU H2 H N N 313 LEU HA H N N 314 LEU HB2 H N N 315 LEU HB3 H N N 316 LEU HG H N N 317 LEU HD11 H N N 318 LEU HD12 H N N 319 LEU HD13 H N N 320 LEU HD21 H N N 321 LEU HD22 H N N 322 LEU HD23 H N N 323 LEU HXT H N N 324 LYS N N N N 325 LYS CA C N S 326 LYS C C N N 327 LYS O O N N 328 LYS CB C N N 329 LYS CG C N N 330 LYS CD C N N 331 LYS CE C N N 332 LYS NZ N N N 333 LYS OXT O N N 334 LYS H H N N 335 LYS H2 H N N 336 LYS HA H N N 337 LYS HB2 H N N 338 LYS HB3 H N N 339 LYS HG2 H N N 340 LYS HG3 H N N 341 LYS HD2 H N N 342 LYS HD3 H N N 343 LYS HE2 H N N 344 LYS HE3 H N N 345 LYS HZ1 H N N 346 LYS HZ2 H N N 347 LYS HZ3 H N N 348 LYS HXT H N N 349 MET N N N N 350 MET CA C N S 351 MET C C N N 352 MET O O N N 353 MET CB C N N 354 MET CG C N N 355 MET SD S N N 356 MET CE C N N 357 MET OXT O N N 358 MET H H N N 359 MET H2 H N N 360 MET HA H N N 361 MET HB2 H N N 362 MET HB3 H N N 363 MET HG2 H N N 364 MET HG3 H N N 365 MET HE1 H N N 366 MET HE2 H N N 367 MET HE3 H N N 368 MET HXT H N N 369 PHE N N N N 370 PHE CA C N S 371 PHE C C N N 372 PHE O O N N 373 PHE CB C N N 374 PHE CG C Y N 375 PHE CD1 C Y N 376 PHE CD2 C Y N 377 PHE CE1 C Y N 378 PHE CE2 C Y N 379 PHE CZ C Y N 380 PHE OXT O N N 381 PHE H H N N 382 PHE H2 H N N 383 PHE HA H N N 384 PHE HB2 H N N 385 PHE HB3 H N N 386 PHE HD1 H N N 387 PHE HD2 H N N 388 PHE HE1 H N N 389 PHE HE2 H N N 390 PHE HZ H N N 391 PHE HXT H N N 392 PRO N N N N 393 PRO CA C N S 394 PRO C C N N 395 PRO O O N N 396 PRO CB C N N 397 PRO CG C N N 398 PRO CD C N N 399 PRO OXT O N N 400 PRO H H N N 401 PRO HA H N N 402 PRO HB2 H N N 403 PRO HB3 H N N 404 PRO HG2 H N N 405 PRO HG3 H N N 406 PRO HD2 H N N 407 PRO HD3 H N N 408 PRO HXT H N N 409 SER N N N N 410 SER CA C N S 411 SER C C N N 412 SER O O N N 413 SER CB C N N 414 SER OG O N N 415 SER OXT O N N 416 SER H H N N 417 SER H2 H N N 418 SER HA H N N 419 SER HB2 H N N 420 SER HB3 H N N 421 SER HG H N N 422 SER HXT H N N 423 THR N N N N 424 THR CA C N S 425 THR C C N N 426 THR O O N N 427 THR CB C N R 428 THR OG1 O N N 429 THR CG2 C N N 430 THR OXT O N N 431 THR H H N N 432 THR H2 H N N 433 THR HA H N N 434 THR HB H N N 435 THR HG1 H N N 436 THR HG21 H N N 437 THR HG22 H N N 438 THR HG23 H N N 439 THR HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 VAL N N N N 465 VAL CA C N S 466 VAL C C N N 467 VAL O O N N 468 VAL CB C N N 469 VAL CG1 C N N 470 VAL CG2 C N N 471 VAL OXT O N N 472 VAL H H N N 473 VAL H2 H N N 474 VAL HA H N N 475 VAL HB H N N 476 VAL HG11 H N N 477 VAL HG12 H N N 478 VAL HG13 H N N 479 VAL HG21 H N N 480 VAL HG22 H N N 481 VAL HG23 H N N 482 VAL HXT H N N 483 ZN ZN ZN N N 484 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLU N CA sing N N 232 GLU N H sing N N 233 GLU N H2 sing N N 234 GLU CA C sing N N 235 GLU CA CB sing N N 236 GLU CA HA sing N N 237 GLU C O doub N N 238 GLU C OXT sing N N 239 GLU CB CG sing N N 240 GLU CB HB2 sing N N 241 GLU CB HB3 sing N N 242 GLU CG CD sing N N 243 GLU CG HG2 sing N N 244 GLU CG HG3 sing N N 245 GLU CD OE1 doub N N 246 GLU CD OE2 sing N N 247 GLU OE2 HE2 sing N N 248 GLU OXT HXT sing N N 249 GLY N CA sing N N 250 GLY N H sing N N 251 GLY N H2 sing N N 252 GLY CA C sing N N 253 GLY CA HA2 sing N N 254 GLY CA HA3 sing N N 255 GLY C O doub N N 256 GLY C OXT sing N N 257 GLY OXT HXT sing N N 258 HIS N CA sing N N 259 HIS N H sing N N 260 HIS N H2 sing N N 261 HIS CA C sing N N 262 HIS CA CB sing N N 263 HIS CA HA sing N N 264 HIS C O doub N N 265 HIS C OXT sing N N 266 HIS CB CG sing N N 267 HIS CB HB2 sing N N 268 HIS CB HB3 sing N N 269 HIS CG ND1 sing Y N 270 HIS CG CD2 doub Y N 271 HIS ND1 CE1 doub Y N 272 HIS ND1 HD1 sing N N 273 HIS CD2 NE2 sing Y N 274 HIS CD2 HD2 sing N N 275 HIS CE1 NE2 sing Y N 276 HIS CE1 HE1 sing N N 277 HIS NE2 HE2 sing N N 278 HIS OXT HXT sing N N 279 ILE N CA sing N N 280 ILE N H sing N N 281 ILE N H2 sing N N 282 ILE CA C sing N N 283 ILE CA CB sing N N 284 ILE CA HA sing N N 285 ILE C O doub N N 286 ILE C OXT sing N N 287 ILE CB CG1 sing N N 288 ILE CB CG2 sing N N 289 ILE CB HB sing N N 290 ILE CG1 CD1 sing N N 291 ILE CG1 HG12 sing N N 292 ILE CG1 HG13 sing N N 293 ILE CG2 HG21 sing N N 294 ILE CG2 HG22 sing N N 295 ILE CG2 HG23 sing N N 296 ILE CD1 HD11 sing N N 297 ILE CD1 HD12 sing N N 298 ILE CD1 HD13 sing N N 299 ILE OXT HXT sing N N 300 LEU N CA sing N N 301 LEU N H sing N N 302 LEU N H2 sing N N 303 LEU CA C sing N N 304 LEU CA CB sing N N 305 LEU CA HA sing N N 306 LEU C O doub N N 307 LEU C OXT sing N N 308 LEU CB CG sing N N 309 LEU CB HB2 sing N N 310 LEU CB HB3 sing N N 311 LEU CG CD1 sing N N 312 LEU CG CD2 sing N N 313 LEU CG HG sing N N 314 LEU CD1 HD11 sing N N 315 LEU CD1 HD12 sing N N 316 LEU CD1 HD13 sing N N 317 LEU CD2 HD21 sing N N 318 LEU CD2 HD22 sing N N 319 LEU CD2 HD23 sing N N 320 LEU OXT HXT sing N N 321 LYS N CA sing N N 322 LYS N H sing N N 323 LYS N H2 sing N N 324 LYS CA C sing N N 325 LYS CA CB sing N N 326 LYS CA HA sing N N 327 LYS C O doub N N 328 LYS C OXT sing N N 329 LYS CB CG sing N N 330 LYS CB HB2 sing N N 331 LYS CB HB3 sing N N 332 LYS CG CD sing N N 333 LYS CG HG2 sing N N 334 LYS CG HG3 sing N N 335 LYS CD CE sing N N 336 LYS CD HD2 sing N N 337 LYS CD HD3 sing N N 338 LYS CE NZ sing N N 339 LYS CE HE2 sing N N 340 LYS CE HE3 sing N N 341 LYS NZ HZ1 sing N N 342 LYS NZ HZ2 sing N N 343 LYS NZ HZ3 sing N N 344 LYS OXT HXT sing N N 345 MET N CA sing N N 346 MET N H sing N N 347 MET N H2 sing N N 348 MET CA C sing N N 349 MET CA CB sing N N 350 MET CA HA sing N N 351 MET C O doub N N 352 MET C OXT sing N N 353 MET CB CG sing N N 354 MET CB HB2 sing N N 355 MET CB HB3 sing N N 356 MET CG SD sing N N 357 MET CG HG2 sing N N 358 MET CG HG3 sing N N 359 MET SD CE sing N N 360 MET CE HE1 sing N N 361 MET CE HE2 sing N N 362 MET CE HE3 sing N N 363 MET OXT HXT sing N N 364 PHE N CA sing N N 365 PHE N H sing N N 366 PHE N H2 sing N N 367 PHE CA C sing N N 368 PHE CA CB sing N N 369 PHE CA HA sing N N 370 PHE C O doub N N 371 PHE C OXT sing N N 372 PHE CB CG sing N N 373 PHE CB HB2 sing N N 374 PHE CB HB3 sing N N 375 PHE CG CD1 doub Y N 376 PHE CG CD2 sing Y N 377 PHE CD1 CE1 sing Y N 378 PHE CD1 HD1 sing N N 379 PHE CD2 CE2 doub Y N 380 PHE CD2 HD2 sing N N 381 PHE CE1 CZ doub Y N 382 PHE CE1 HE1 sing N N 383 PHE CE2 CZ sing Y N 384 PHE CE2 HE2 sing N N 385 PHE CZ HZ sing N N 386 PHE OXT HXT sing N N 387 PRO N CA sing N N 388 PRO N CD sing N N 389 PRO N H sing N N 390 PRO CA C sing N N 391 PRO CA CB sing N N 392 PRO CA HA sing N N 393 PRO C O doub N N 394 PRO C OXT sing N N 395 PRO CB CG sing N N 396 PRO CB HB2 sing N N 397 PRO CB HB3 sing N N 398 PRO CG CD sing N N 399 PRO CG HG2 sing N N 400 PRO CG HG3 sing N N 401 PRO CD HD2 sing N N 402 PRO CD HD3 sing N N 403 PRO OXT HXT sing N N 404 SER N CA sing N N 405 SER N H sing N N 406 SER N H2 sing N N 407 SER CA C sing N N 408 SER CA CB sing N N 409 SER CA HA sing N N 410 SER C O doub N N 411 SER C OXT sing N N 412 SER CB OG sing N N 413 SER CB HB2 sing N N 414 SER CB HB3 sing N N 415 SER OG HG sing N N 416 SER OXT HXT sing N N 417 THR N CA sing N N 418 THR N H sing N N 419 THR N H2 sing N N 420 THR CA C sing N N 421 THR CA CB sing N N 422 THR CA HA sing N N 423 THR C O doub N N 424 THR C OXT sing N N 425 THR CB OG1 sing N N 426 THR CB CG2 sing N N 427 THR CB HB sing N N 428 THR OG1 HG1 sing N N 429 THR CG2 HG21 sing N N 430 THR CG2 HG22 sing N N 431 THR CG2 HG23 sing N N 432 THR OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 VAL N CA sing N N 458 VAL N H sing N N 459 VAL N H2 sing N N 460 VAL CA C sing N N 461 VAL CA CB sing N N 462 VAL CA HA sing N N 463 VAL C O doub N N 464 VAL C OXT sing N N 465 VAL CB CG1 sing N N 466 VAL CB CG2 sing N N 467 VAL CB HB sing N N 468 VAL CG1 HG11 sing N N 469 VAL CG1 HG12 sing N N 470 VAL CG1 HG13 sing N N 471 VAL CG2 HG21 sing N N 472 VAL CG2 HG22 sing N N 473 VAL CG2 HG23 sing N N 474 VAL OXT HXT sing N N 475 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2MF8 'double helix' 2MF8 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 C DT 13 1_555 0.219 -0.063 0.017 -0.308 -1.830 -5.581 1 B_DA1:DT26_C B 1 ? C 26 ? 20 1 1 B DC 2 1_555 C DG 12 1_555 0.207 -0.174 0.016 -1.209 -1.300 -3.135 2 B_DC2:DG25_C B 2 ? C 25 ? 19 1 1 B DC 3 1_555 C DG 11 1_555 0.166 -0.126 0.018 -1.673 -0.354 -3.035 3 B_DC3:DG24_C B 3 ? C 24 ? 19 1 1 B DG 4 1_555 C DC 10 1_555 0.000 -0.074 0.024 -1.559 0.617 -2.943 4 B_DG4:DC23_C B 4 ? C 23 ? 19 1 1 B DA 5 1_555 C DT 9 1_555 0.250 -0.047 0.015 -0.715 1.420 -5.287 5 B_DA5:DT22_C B 5 ? C 22 ? 20 1 1 B DA 6 1_555 C DT 8 1_555 0.316 0.064 -0.011 0.315 -0.930 2.751 6 B_DA6:DT21_C B 6 ? C 21 ? 20 1 1 B DA 7 1_555 C DT 7 1_555 -0.388 -0.129 -0.113 0.133 1.751 -4.230 7 B_DA7:DT20_C B 7 ? C 20 ? 20 1 1 B DG 8 1_555 C DC 6 1_555 0.380 -0.001 -0.112 -0.956 2.462 -6.697 8 B_DG8:DC19_C B 8 ? C 19 ? 19 1 1 B DT 9 1_555 C DA 5 1_555 -0.333 -0.167 -0.071 0.568 2.438 2.091 9 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 B DT 10 1_555 C DA 4 1_555 -0.501 0.055 0.039 -0.261 -0.242 8.773 10 B_DT10:DA17_C B 10 ? C 17 ? 20 1 1 B DC 11 1_555 C DG 3 1_555 -0.188 -0.247 0.025 -1.130 1.439 0.071 11 B_DC11:DG16_C B 11 ? C 16 ? 19 1 1 B DA 12 1_555 C DT 2 1_555 -0.141 -0.005 0.043 0.096 1.780 -2.233 12 B_DA12:DT15_C B 12 ? C 15 ? 20 1 1 B DC 13 1_555 C DG 1 1_555 0.129 -0.067 0.042 1.527 1.247 0.098 13 B_DC13:DG14_C B 13 ? C 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 C DT 13 1_555 B DC 2 1_555 C DG 12 1_555 0.034 -0.278 3.358 0.619 -3.096 36.624 -0.006 0.033 3.370 -4.916 -0.982 36.755 1 BB_DA1DC2:DG25DT26_CC B 1 ? C 26 ? B 2 ? C 25 ? 1 B DC 2 1_555 C DG 12 1_555 B DC 3 1_555 C DG 11 1_555 -0.019 -0.249 3.371 -0.069 -3.060 35.884 0.047 0.020 3.380 -4.955 0.112 36.010 2 BB_DC2DC3:DG24DG25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 B DC 3 1_555 C DG 11 1_555 B DG 4 1_555 C DC 10 1_555 -0.001 -0.288 3.384 -0.028 -3.109 34.200 0.017 -0.003 3.396 -5.272 0.048 34.336 3 BB_DC3DG4:DC23DG24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 B DG 4 1_555 C DC 10 1_555 B DA 5 1_555 C DT 9 1_555 -0.040 -0.253 3.365 -0.550 -3.307 36.771 0.061 -0.014 3.374 -5.228 0.870 36.918 4 BB_DG4DA5:DT22DC23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 B DA 5 1_555 C DT 9 1_555 B DA 6 1_555 C DT 8 1_555 0.337 -0.120 3.419 1.084 -1.279 35.839 -0.003 -0.385 3.429 -2.077 -1.761 35.877 5 BB_DA5DA6:DT21DT22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 B DA 6 1_555 C DT 8 1_555 B DA 7 1_555 C DT 7 1_555 -0.912 -0.186 3.872 0.338 -8.321 35.103 1.105 1.531 3.808 -13.562 -0.552 36.047 6 BB_DA6DA7:DT20DT21_CC B 6 ? C 21 ? B 7 ? C 20 ? 1 B DA 7 1_555 C DT 7 1_555 B DG 8 1_555 C DC 6 1_555 0.553 0.252 3.305 -1.958 3.870 32.489 -0.225 -1.320 3.274 6.879 3.481 32.770 7 BB_DA7DG8:DC19DT20_CC B 7 ? C 20 ? B 8 ? C 19 ? 1 B DG 8 1_555 C DC 6 1_555 B DT 9 1_555 C DA 5 1_555 1.126 -1.014 4.114 -2.508 -13.299 31.043 1.077 -2.468 4.096 -23.498 4.431 33.798 8 BB_DG8DT9:DA18DC19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 B DT 9 1_555 C DA 5 1_555 B DT 10 1_555 C DA 4 1_555 0.550 -0.402 3.672 2.294 -5.389 35.741 0.215 -0.519 3.718 -8.708 -3.708 36.202 9 BB_DT9DT10:DA17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 B DT 10 1_555 C DA 4 1_555 B DC 11 1_555 C DG 3 1_555 -0.880 0.135 3.473 1.021 -4.460 38.165 0.792 1.471 3.413 -6.791 -1.555 38.428 10 BB_DT10DC11:DG16DA17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 B DC 11 1_555 C DG 3 1_555 B DA 12 1_555 C DT 2 1_555 -0.057 -0.290 3.380 -0.648 -3.418 35.089 0.047 -0.006 3.393 -5.651 1.071 35.255 11 BB_DC11DA12:DT15DG16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 B DA 12 1_555 C DT 2 1_555 B DC 13 1_555 C DG 1 1_555 0.036 -0.275 3.353 0.636 -3.091 36.649 -0.003 0.033 3.365 -4.904 -1.010 36.780 12 BB_DA12DC13:DG14DT15_CC B 12 ? C 15 ? B 13 ? C 14 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2MF8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S ZN # loop_